Carg27269 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27269
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin efflux carrier component
Location	Cucurbita_argyrosperma_scaffold_190 : 46039 .. 48227 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTCGCTGATCATCCACAAAACGGTGAAAACAAAGGTAATGAATACTAATATAATTTATCCTTCAATCTCAATAACTCCACAAATTCCAGTTTATTAATAATTTCCCATTTTCGTTCTGATTTGAAGCTGTTCCAGAAACCGAGAGCTATGTAGCTGAAACCTTTAGTTTCACCGGCAAAGAAGGGGAAGAGGAAAGAGATGATCAGAAAGAGAATCCCATAGGCTCCGCCAGTGATCTCCACGGAAAATTCACCGGCGGAGGTCCAGACGGCGGGAACTCGAAACTAATGCCGCCGGCAAGTGTGATGACCCGTCTGATTCTAATCATGGTGTGGCGGAAGCTGATAAGAAACCCCAACACATATTCAAGCCTTATCGGTTTAATCTGGTCGCTGATTTCATTCCGGTAAGGCAAAAATTAATCAATTCCCATTGATCTAATTACAGTAGATTGAAACTTCCATTTGAACTAATTGTGTTCCCTCTTGTTTGTGGATTGTCTATGAAATTTGTTCTGTATTTATTGTTTGTTCATGGAGTTGTCTGTGTTGTTGGGCTGTGATGAAAAAACTTGCAGGTGGCATGTGGCCATGCCGAAAATAATAGAGAAATCAATCTCCATACTCTCTGACACAGGACTTGGAATGGCTATGTTTAGCTTAGGTGAGTAGTCGTTTTCTTTATTTATTGTATTCGTTTCATTAAGCATCATTCTAAAGAAGAAGAAAATACTAAGAATTAATGATAGAAACTAAAGAAATCACTAGTTCTTTTGGTCTGTGTGATCATGCTGTCACGTAATTATCCCAATAATTGAAGACAAACTTGATTGAATCATTACAAGGAGGAAGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACTCTGTGAATTGATTTGTTTTATAATCTGTGTTGATAGTTCACGCATAAGTTATAACCAGTTGAGTTAGGTTCGGTTTAGATGAGCCGCTCCGAGATGGATGATATTATGAGTCTTTGTCTGGAAATTAGGCTGGGAAAGAATGGGGATTCTCTTGCATTATTTGTTTTGCTCACATTGTGTGTCTGAAAAGGGATGGGAAAGTTTTTAATCTTGGGGCTTGGCCAGCCGACAAGAGGACCCAGTGGGTCCAGTGGGCAACGTCAACTGGGTGGTCCGGAGTTAATGCCCTCTCCATTGCACTCCAAATTAGTGAAACTAGTTGACATGTAGTGTTTTTTTTCTTTTTCTTTGAAATTCTTGTTTATAGGTATTTTTATGGGACTACAACCAAAGATGATAGCATGTGGGAACTCTGTTGCTGTTTTTTCCATGGCCATCAGATTCCTAACTGGGCCTGCTGTCATGGCCATCGCTTCCTTTGCCATCGGCTTACGTGGAACTCTCCTCCGTGTCGCCATTGTTCAGGTAACTCCCGAATTATGATGGTCACCTACTTCAAATTTAATATCTTACAAGTTTCGTCGACAACTGGTTCTAGAAAATAATTGAGATGGGGGAAAAGTGGAGTACTACTCATATTATTAAGTGAAAGACTTTAATGAGAGATAATAACTTTAGGCACATGAAATGAATATTGAAAAGCTGGTGATTGTGTATAATATCCCATGTGCTATGTAGGCGGCATTGCCTCAAGGAATTGTACCGTTTGTGTTTGCTAAAGAGTACAATGTCCATCCAGCAATTCTGAGCACAGGGTAAGCAAACCCCATCTCTCACAGATTCCTGTTTTTTTTGGTTCAAATGATTGAGATTTTGGTACATTTTTTGTGACATTGCAGAGTGATATTTGGGATGCTGATAGCGCTACCCATTACTTTGCTCTACTATGTTCTGCTGGGTCTGTAAACTGGTTTCAACTTGGAATGAATTTCTTTCATATTTCTTAATGGGTTTGAGATGAAGAAGAAGATGATAGAATATATAGAGAAAAAGTTTGACAAAAGTTGAGAGAGAAGCCCCGAAAAATGTCAAAGTTTCATCAGCTTTACAGAAGATTTTTAGAACAAAGAGAAGAAAAAGGCATCGCTCAAGGGAGAGAGACATAAAAGGAAAACCCAACCCAGCCAGGAAAGGCAAATCTTCGATCGTTGCCGTTTTGGGTGTAAATTTCTGACTCAAATGGGAGACCAATAGGTTTCTTAATTAGTTTTTTTTTTTTTTTTT

mRNA sequence

ATGCTCGTCGCTGATCATCCACAAAACGGTGAAAACAAAGGTATTTTTATGGGACTACAACCAAAGATGATAGCATGTGGGAACTCTGTTGCTGTTTTTTCCATGGCCATCAGATTCCTAACTGGGCCTGCTGTCATGGCCATCGCTTCCTTTGCCATCGGCTTACGTGGAACTCTCCTCCGTGTCGCCATTGTTCAGGCGGCATTGCCTCAAGGAATTGTACCGTTTGTGTTTGCTAAAGAGTACAATGTCCATCCAGCAATTCTGAGCACAGGAGTGATATTTGGGATGCTGATAGCGCTACCCATTACTTTGCTCTACTATGTTCTGCTGGGTCTGTAAACTGGTTTCAACTTGGAATGAATTTCTTTCATATTTCTTAATGGGTTTGAGATGAAGAAGAAGATGATAGAATATATAGAGAAAAAGTTTGACAAAAGTTGAGAGAGAAGCCCCGAAAAATGTCAAAGTTTCATCAGCTTTACAGAAGATTTTTAGAACAAAGAGAAGAAAAAGGCATCGCTCAAGGGAGAGAGACATAAAAGGAAAACCCAACCCAGCCAGGAAAGGCAAATCTTCGATCGTTGCCGTTTTGGGTGTAAATTTCTGACTCAAATGGGAGACCAATAGGTTTCTTAATTAGTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGCTCGTCGCTGATCATCCACAAAACGGTGAAAACAAAGGTATTTTTATGGGACTACAACCAAAGATGATAGCATGTGGGAACTCTGTTGCTGTTTTTTCCATGGCCATCAGATTCCTAACTGGGCCTGCTGTCATGGCCATCGCTTCCTTTGCCATCGGCTTACGTGGAACTCTCCTCCGTGTCGCCATTGTTCAGGCGGCATTGCCTCAAGGAATTGTACCGTTTGTGTTTGCTAAAGAGTACAATGTCCATCCAGCAATTCTGAGCACAGGAGTGATATTTGGGATGCTGATAGCGCTACCCATTACTTTGCTCTACTATGTTCTGCTGGGTCTGTAA

Protein sequence

MLVADHPQNGENKGIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL

Homology

[Close]

BLAST of Carg27269 vs. NCBI nr
Match: XP_022952518.1 (auxin efflux carrier component 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI
Sbjct: 544 GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 603

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 604 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 643

[Close]

BLAST of Carg27269 vs. NCBI nr
Match: XP_022952509.1 (auxin efflux carrier component 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI
Sbjct: 547 GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 606

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 607 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 646

[Close]

BLAST of Carg27269 vs. NCBI nr
Match: XP_022989974.1 (auxin efflux carrier component 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI
Sbjct: 545 GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 604

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 605 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 644

[Close]

BLAST of Carg27269 vs. NCBI nr
Match: XP_022989975.1 (auxin efflux carrier component 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI
Sbjct: 542 GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 601

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 602 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 641

[Close]

BLAST of Carg27269 vs. NCBI nr
Match: XP_023520930.1 (auxin efflux carrier component 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI
Sbjct: 544 GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 603

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 604 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 643

[Close]

BLAST of Carg27269 vs. TAIR10
Match: AT1G70940.1 (Auxin efflux carrier family protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-42
Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACGNSVA F+MA+RFLTGPAVMA+A+ AIGLRG LLRVAIVQAALPQGI
Sbjct: 541 GLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQAALPQGI 600

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITL+YY+LLGL
Sbjct: 601 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 640

[Close]

BLAST of Carg27269 vs. TAIR10
Match: AT1G23080.1 (Auxin efflux carrier family protein)

HSP 1 Score: 166.4 bits (420), Expect = 1.0e-41
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACGNS A F+MA+RF TGPAVMA+A+ AIGLRG LLRVAIVQAALPQGI
Sbjct: 520 GLFMALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQAALPQGI 579

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITL+YY+LLGL
Sbjct: 580 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 619

[Close]

BLAST of Carg27269 vs. TAIR10
Match: AT2G01420.2 (Auxin efflux carrier family protein)

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-41
Identity = 83/100 (83.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACGNSVA F+MA+RF+TGPA+MA+A  AIGL G LLR+AIVQAALPQGI
Sbjct: 517 GLFMALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQAALPQGI 576

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHP ILSTGVIFGMLIALPITL+YY+LLGL
Sbjct: 577 VPFVFAKEYNVHPTILSTGVIFGMLIALPITLVYYILLGL 616

[Close]

BLAST of Carg27269 vs. TAIR10
Match: AT5G57090.1 (Auxin efflux carrier family protein)

HSP 1 Score: 154.1 bits (388), Expect = 5.3e-38
Identity = 80/100 (80.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACG SVA F+MA+RFLTGPAV+A  S AIG+RG LL +AIVQAALPQGI
Sbjct: 548 GLFMALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIRGDLLHIAIVQAALPQGI 607

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHP ILST VIFGML+ALP+T+LYYVLLGL
Sbjct: 608 VPFVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLLGL 647

[Close]

BLAST of Carg27269 vs. TAIR10
Match: AT1G73590.1 (Auxin efflux carrier family protein)

HSP 1 Score: 149.8 bits (377), Expect = 9.9e-37
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM L P++IACGN  A F+ A+RF+ GPAVM +AS+A+GLRG LL VAI+QAALPQGI
Sbjct: 523 GLFMALNPRIIACGNRRAAFAAAMRFVVGPAVMLVASYAVGLRGVLLHVAIIQAALPQGI 582

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHP ILST VIFGMLIALPITLLYY+LLGL
Sbjct: 583 VPFVFAKEYNVHPDILSTAVIFGMLIALPITLLYYILLGL 622

[Close]

BLAST of Carg27269 vs. Swiss-Prot
Match: sp|Q9S7Z8|PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-41
Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACGNSVA F+MA+RFLTGPAVMA+A+ AIGLRG LLRVAIVQAALPQGI
Sbjct: 541 GLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQAALPQGI 600

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITL+YY+LLGL
Sbjct: 601 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 640

[Close]

BLAST of Carg27269 vs. Swiss-Prot
Match: sp|Q940Y5|PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana OX=3702 GN=PIN7 PE=1 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-40
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACGNS A F+MA+RF TGPAVMA+A+ AIGLRG LLRVAIVQAALPQGI
Sbjct: 520 GLFMALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQAALPQGI 579

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITL+YY+LLGL
Sbjct: 580 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 619

[Close]

BLAST of Carg27269 vs. Swiss-Prot
Match: sp|Q8RWZ6|PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39
Identity = 83/100 (83.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACGNSVA F+MA+RF+TGPA+MA+A  AIGL G LLR+AIVQAALPQGI
Sbjct: 517 GLFMALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQAALPQGI 576

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHP ILSTGVIFGMLIALPITL+YY+LLGL
Sbjct: 577 VPFVFAKEYNVHPTILSTGVIFGMLIALPITLVYYILLGL 616

[Close]

BLAST of Carg27269 vs. Swiss-Prot
Match: sp|Q5VP70|PIN3A_ORYSJ (Auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN3A PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-38
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQP +IACG S AV SMA+RFL GPAVMA AS AIGLRGTLL VAIVQAALPQGI
Sbjct: 519 GLFMALQPSIIACGKSAAVVSMAVRFLAGPAVMAAASIAIGLRGTLLHVAIVQAALPQGI 578

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILST VIFGMLIALPITLLYY+LLGL
Sbjct: 579 VPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL 618

[Close]

BLAST of Carg27269 vs. Swiss-Prot
Match: sp|Q67UL3|PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1C PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-38
Identity = 83/100 (83.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQP++IACGN VA F+MA+RFLTGPAVMA AS A+GLRGTLL VAIVQAALPQGI
Sbjct: 493 GLFMALQPRIIACGNKVATFAMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGI 552

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEY+VHP ILST VIFGMLIALPITL+YY+LLGL
Sbjct: 553 VPFVFAKEYSVHPDILSTAVIFGMLIALPITLVYYILLGL 592

[Close]

BLAST of Carg27269 vs. TrEMBL
Match: tr|A0A1S3CSV9|A0A1S3CSV9_CUCME (Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103504578 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.3e-42
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVA F+MAIRFLTGPAVMAIAS AIGLRGTLLRVAIVQAALPQGI
Sbjct: 537 GIFMGLQPKMIACGNSVATFAMAIRFLTGPAVMAIASIAIGLRGTLLRVAIVQAALPQGI 596

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 597 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 636

[Close]

BLAST of Carg27269 vs. TrEMBL
Match: tr|A0A1S4E6N1|A0A1S4E6N1_CUCME (Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103504578 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.3e-42
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVA F+MAIRFLTGPAVMAIAS AIGLRGTLLRVAIVQAALPQGI
Sbjct: 531 GIFMGLQPKMIACGNSVATFAMAIRFLTGPAVMAIASIAIGLRGTLLRVAIVQAALPQGI 590

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 591 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 630

[Close]

BLAST of Carg27269 vs. TrEMBL
Match: tr|A0A0A0KT02|A0A0A0KT02_CUCSA (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_5G576590 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.3e-42
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVA F+MAIRFLTGPAVMAIAS AIGLRGTLLRVAIVQAALPQGI
Sbjct: 537 GIFMGLQPKMIACGNSVATFAMAIRFLTGPAVMAIASIAIGLRGTLLRVAIVQAALPQGI 596

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL
Sbjct: 597 VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 636

[Close]

BLAST of Carg27269 vs. TrEMBL
Match: tr|D7URM6|D7URM6_CUCSA (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN6 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-40
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           GIFMGLQPKMIACGNSVA F+MAIR LTGPAVMAIAS AIGLRGTLLRVAIVQAALPQGI
Sbjct: 537 GIFMGLQPKMIACGNSVATFAMAIRLLTGPAVMAIASIAIGLRGTLLRVAIVQAALPQGI 596

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHPAILST VIFGMLIALPITLLYYVLLGL
Sbjct: 597 VPFVFAKEYNVHPAILSTWVIFGMLIALPITLLYYVLLGL 636

[Close]

BLAST of Carg27269 vs. TrEMBL
Match: tr|A0A251VLQ3|A0A251VLQ3_HELAN (Auxin efflux carrier component OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0002071 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.0e-39
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 14  GIFMGLQPKMIACGNSVAVFSMAIRFLTGPAVMAIASFAIGLRGTLLRVAIVQAALPQGI 73
           G+FM LQPK+IACGNSVA+FSMA+RFLTGPAVMA AS  +GLRGTLLRVAIVQAALPQGI
Sbjct: 520 GLFMALQPKIIACGNSVAIFSMAVRFLTGPAVMAAASIIVGLRGTLLRVAIVQAALPQGI 579

Query: 74  VPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 114
           VPFVFAKEYNVHP ILSTGVIFGMLIALPITLLYY+LLGL
Sbjct: 580 VPFVFAKEYNVHPTILSTGVIFGMLIALPITLLYYILLGL 619

The following BLAST results are available for this feature:

BLAST of Carg27269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952518.1	2.0e-43	100.00	auxin efflux carrier component 4-like isoform X2 [Cucurbita moschata]	[more]
XP_022952509.1	2.0e-43	100.00	auxin efflux carrier component 4-like isoform X1 [Cucurbita moschata]	[more]
XP_022989974.1	2.0e-43	100.00	auxin efflux carrier component 4-like isoform X1 [Cucurbita maxima]	[more]
XP_022989975.1	2.0e-43	100.00	auxin efflux carrier component 4-like isoform X2 [Cucurbita maxima]	[more]
XP_023520930.1	2.0e-43	100.00	auxin efflux carrier component 4-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27269 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70940.1	1.2e-42	88.00	Auxin efflux carrier family protein	[more]
AT1G23080.1	1.0e-41	86.00	Auxin efflux carrier family protein	[more]
AT2G01420.2	6.6e-41	83.00	Auxin efflux carrier family protein	[more]
AT5G57090.1	5.3e-38	80.00	Auxin efflux carrier family protein	[more]
AT1G73590.1	9.9e-37	77.00	Auxin efflux carrier family protein	[more]

BLAST of Carg27269 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S7Z8\|PIN3_ARATH	2.2e-41	88.00	Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV...	[more]
sp\|Q940Y5\|PIN7_ARATH	1.8e-40	86.00	Auxin efflux carrier component 7 OS=Arabidopsis thaliana OX=3702 GN=PIN7 PE=1 SV...	[more]
sp\|Q8RWZ6\|PIN4_ARATH	1.2e-39	83.00	Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV...	[more]
sp\|Q5VP70\|PIN3A_ORYSJ	1.3e-38	86.00	Auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica OX=39947 GN=PI...	[more]
sp\|Q67UL3\|PIN1C_ORYSJ	2.3e-38	83.00	Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Carg27269 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSV9\|A0A1S3CSV9_CUCME	4.3e-42	97.00	Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103504578 PE=3 SV=1	[more]
tr\|A0A1S4E6N1\|A0A1S4E6N1_CUCME	4.3e-42	97.00	Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103504578 PE=3 SV=1	[more]
tr\|A0A0A0KT02\|A0A0A0KT02_CUCSA	4.3e-42	97.00	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_5G576590 PE=3 S...	[more]
tr\|D7URM6\|D7URM6_CUCSA	1.8e-40	95.00	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN6 PE=2 SV=1	[more]
tr\|A0A251VLQ3\|A0A251VLQ3_HELAN	2.0e-39	89.00	Auxin efflux carrier component OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g000...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR004776	Mem_trans

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27269-RA	Carg27269-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004776	Membrane transport protein	PFAM	PF03547	Mem_trans	coord: 14..108 e-value: 3.4E-39 score: 134.3
None	No IPR available	PANTHER	PTHR31752:SF36	AUXIN EFFLUX CARRIER COMPONENT 3-RELATED	coord: 14..113
None	No IPR available	PANTHER	PTHR31752	FAMILY NOT NAMED	coord: 14..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27269	Cla003909	Watermelon (97103) v1	carwmB0318
Carg27269	Csa5G576590	Cucumber (Chinese Long) v2	carcuB0357
Carg27269	MELO3C005326	Melon (DHL92) v3.5.1	carmeB0334
Carg27269	ClCG01G006060	Watermelon (Charleston Gray)	carwcgB0320
Carg27269	CSPI05G19790	Wild cucumber (PI 183967)	carcpiB0361
Carg27269	CmaCh15G009420	Cucurbita maxima (Rimu)	carcmaB0460
Carg27269	CmaCh04G020900	Cucurbita maxima (Rimu)	carcmaB0461
Carg27269	CmoCh04G021920	Cucurbita moschata (Rifu)	carcmoB0452
Carg27269	CmoCh15G009810	Cucurbita moschata (Rifu)	carcmoB0451
Carg27269	Lsi09G006410	Bottle gourd (USVL1VR-Ls)	carlsiB301
Carg27269	Cp4.1LG13g03780	Cucurbita pepo (Zucchini)	carcpeB0458
Carg27269	CsGy5G019280	Cucumber (Gy14) v2	carcgybB0340
Carg27269	MELO3C005326.2	Melon (DHL92) v3.6.1	carmedB0342
Carg27269	CsaV3_5G028620	Cucumber (Chinese Long) v3	carcucB0361
Carg27269	Cla97C01G006350	Watermelon (97103) v2	carwmbB0337
Carg27269	Bhi12G000757	Wax gourd	carwgoB0413

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27269	Cucumber (Gy14) v1	carcgyB0386