Carg27152 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27152
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Coiled-coil protein
Location	Cucurbita_argyrosperma_scaffold_474 : 35022 .. 35679 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCTAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTCACAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGGTAACCCTCCAAATGAAACAACTCTGTTTCTCTATCCCTCATCCTAATCAGTAGAGCTTTGGTTTCCCATGTAGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGTAAACATGGATTCAACCTCTTATCTCTTCATAATCTTTGTATATGCACATATATTTCCGTTAAACTCGGGTCGTGGAAACGTCGTTTTCGCAGGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGTATGTCATTATCATTTGTGATCCACACAGCATTCTCCCCTGTTGCGTGTTCGTTATCTAACCAGGGTTGTTTTTCGAGTTTTAGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGTTCTAAGACTCCCAAC

mRNA sequence

TGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCTAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTCACAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGTTCTAAGACTCCCAAC

Coding sequence (CDS)

TGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCTAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTCACAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGTTCTAAGACTCCCAAC

Protein sequence

WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIFGFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKPLIKELSKILGSKTPN

Homology

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_022930732.1 (uncharacterized protein LOC111437124 [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 2.8e-68
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDKHTSINP KLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP
Sbjct: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 241 LIKELSKILGSKTPN 255

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_023531801.1 (uncharacterized protein LOC111793948 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 1.9e-64
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDKHTSINP KLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNADEIQQKGRSM EPKI MVREQLAPLKVWADDMSKKW V+RN D+KEKP
Sbjct: 181 GFTMSKLDLNNADEIQQKGRSMIEPKIGMVREQLAPLKVWADDMSKKWHVDRNEDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 241 LIKELSKILGSKTPN 255

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_022988910.1 (uncharacterized protein LOC111486122 [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 2.7e-63
Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDK TSINP KLKAAAEGLTNVGKAFGV+TA VFGGST IF
Sbjct: 117 WELPQYENSVVASTANDLRTDKLTSINPEKLKAAAEGLTNVGKAFGVATAFVFGGSTLIF 176

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNA+EIQQKGRSM EPKIEMVREQLAPLKVWADDMSKKW VERNGD+KEKP
Sbjct: 177 GFTMSKLDLNNANEIQQKGRSMIEPKIEMVREQLAPLKVWADDMSKKWHVERNGDIKEKP 236

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 237 LIKELSKILGSKTPN 251

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_004144510.1 (PREDICTED: uncharacterized protein LOC101204303 [Cucumis sativus] >KGN43498.1 hypothetical protein Csa_7G041920 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQ ENS++ASTANDLRTDKHT INP KLKAAAEGL +VGKAF  +TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFT+SKLD+NNA EIQ KG+ M EPK+EM+R+QL P KVWADDMSKKW VER+ D+KEKP
Sbjct: 181 GFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILG+KTPN
Sbjct: 241 LIKELSKILGAKTPN 255

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_008455465.1 (PREDICTED: uncharacterized protein LOC103495622 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 106/135 (78.52%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQ ENS++ASTANDLRTDKHT +NP KLKAAAEGL +VGKAF V+TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVFGGATLIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLD+NNA EIQ KG+SM EPK+EM+R+Q  P KVWADD+SKKW VER+ D+KEKP
Sbjct: 181 GFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERDNDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILG+KTPN
Sbjct: 241 LIKELSKILGAKTPN 255

[Close]

BLAST of Carg27152 vs. TAIR10
Match: AT1G05060.1 (unknown protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-41
Identity = 76/136 (55.88%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKH-TSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFI 60
           W+LP+ ENSV+ASTAN+LR D++ T +NP KLKAA EGL ++GKAF  +T ++FG +T +
Sbjct: 118 WDLPESENSVLASTANELRRDRYGTPVNPEKLKAAGEGLQHIGKAFAAATIIIFGSATLV 177

Query: 61  FGFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNG--DMK 120
           FG   SKLD+ NAD+I+ KG+ +F+PK+E ++EQ+ PL+ WA++MSKKW +E  G   +K
Sbjct: 178 FGTAASKLDMRNADDIRTKGKDLFQPKLESMKEQVEPLRTWAENMSKKWHIENEGGNTIK 237

Query: 121 EKPLIKELSKILGSKT 134
           EKP++KELSKILG K+
Sbjct: 238 EKPILKELSKILGPKS 253

[Close]

BLAST of Carg27152 vs. TrEMBL
Match: tr|A0A1S3C0Z0|A0A1S3C0Z0_CUCME (uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.9e-55
Identity = 106/135 (78.52%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQ ENS++ASTANDLRTDKHT +NP KLKAAAEGL +VGKAF V+TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVFGGATLIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLD+NNA EIQ KG+SM EPK+EM+R+Q  P KVWADD+SKKW VER+ D+KEKP
Sbjct: 181 GFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERDNDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILG+KTPN
Sbjct: 241 LIKELSKILGAKTPN 255

[Close]

BLAST of Carg27152 vs. TrEMBL
Match: tr|A0A0A0K240|A0A0A0K240_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.9e-55
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQ ENS++ASTANDLRTDKHT INP KLKAAAEGL +VGKAF  +TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFT+SKLD+NNA EIQ KG+ M EPK+EM+R+QL P KVWADDMSKKW VER+ D+KEKP
Sbjct: 181 GFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILG+KTPN
Sbjct: 241 LIKELSKILGAKTPN 255

[Close]

BLAST of Carg27152 vs. TrEMBL
Match: tr|A0A2N9GKR2|A0A2N9GKR2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27706 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 89/136 (65.44%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKH-TSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFI 60
           W++PQ E+SV ASTAN+LR D+H TSINP KLKAAAEGL +VGKAF V+TA++FGG+T I
Sbjct: 114 WDVPQLEHSVSASTANELRQDRHATSINPEKLKAAAEGLAHVGKAFAVATAVIFGGATLI 173

Query: 61  FGFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEK 120
           FG  +SKL+L N D+I+ KGR + EPK EM++EQL PLK WAD+MSKKW  ER  + KEK
Sbjct: 174 FGLVVSKLELQNPDDIRTKGRDLVEPKFEMIKEQLVPLKSWADNMSKKWHFEREENAKEK 233

Query: 121 PLIKELSKILGSKTPN 136
           P++KELSKI G+KT N
Sbjct: 234 PIVKELSKIWGAKTSN 249

[Close]

BLAST of Carg27152 vs. TrEMBL
Match: tr|A0A1R3J1Z5|A0A1R3J1Z5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_08164 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 84/133 (63.16%), Postives = 110/133 (82.71%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELP  E+ V+ASTAN+LR DK+T INP KLKAAAEGL  VGKAF V+T ++FGG+T IF
Sbjct: 115 WELPSTEHPVMASTANELRKDKYTPINPEKLKAAAEGLQQVGKAFAVATVIIFGGATLIF 174

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           G  +SKLDL+N+D+I+ KG+ + +PK EM+REQL PL+ WA++MSKKW +E+   +KEKP
Sbjct: 175 GMAVSKLDLHNSDDIKTKGKDLVQPKFEMIREQLFPLRTWAENMSKKWHMEKQEAVKEKP 234

Query: 121 LIKELSKILGSKT 134
           ++KELSKILG+KT
Sbjct: 235 IVKELSKILGAKT 247

[Close]

BLAST of Carg27152 vs. TrEMBL
Match: tr|A0A2R6QWL1|A0A2R6QWL1_ACTCH (Ribosomal RNA small subunit methyltransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc13634 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42
Identity = 85/135 (62.96%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           W+LP  +NS  ASTANDLR DK+  +NP KLKAAA GL+ + KAF V+TA+VFGGST +F
Sbjct: 117 WQLPNTDNSFSASTANDLRHDKYIPVNPEKLKAAAVGLSQIAKAFAVATAVVFGGSTLMF 176

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           G  +SKL+L+++D+ + KG+ + +PK+EMV+EQ  PLK WA DMSKKW +ER  D+KEKP
Sbjct: 177 GLAVSKLELHSSDDFKTKGKDLVQPKLEMVKEQFTPLKNWAGDMSKKWHLEREDDIKEKP 236

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILG+KTPN
Sbjct: 237 LIKELSKILGAKTPN 251

The following BLAST results are available for this feature:

BLAST of Carg27152 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930732.1	2.8e-68	99.26	uncharacterized protein LOC111437124 [Cucurbita moschata]	[more]
XP_023531801.1	1.9e-64	94.81	uncharacterized protein LOC111793948 [Cucurbita pepo subsp. pepo]	[more]
XP_022988910.1	2.7e-63	93.33	uncharacterized protein LOC111486122 [Cucurbita maxima]	[more]
XP_004144510.1	1.4e-54	78.52	PREDICTED: uncharacterized protein LOC101204303 [Cucumis sativus] >KGN43498.1 hy...	[more]
XP_008455465.1	1.4e-54	78.52	PREDICTED: uncharacterized protein LOC103495622 [Cucumis melo]	[more]

BLAST of Carg27152 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05060.1	2.7e-41	55.88	unknown protein	[more]

BLAST of Carg27152 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27152 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0Z0\|A0A1S3C0Z0_CUCME	8.9e-55	78.52	uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=...	[more]
tr\|A0A0A0K240\|A0A0A0K240_CUCSA	8.9e-55	78.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1	[more]
tr\|A0A2N9GKR2\|A0A2N9GKR2_FAGSY	2.1e-43	65.44	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27706 PE=4 SV=1	[more]
tr\|A0A1R3J1Z5\|A0A1R3J1Z5_COCAP	1.3e-42	63.16	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_08164 PE=4 ...	[more]
tr\|A0A2R6QWL1\|A0A2R6QWL1_ACTCH	1.7e-42	62.96	Ribosomal RNA small subunit methyltransferase OS=Actinidia chinensis var. chinen...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27152-RA	Carg27152-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36704	FAMILY NOT NAMED	coord: 1..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27152	Cla015620	Watermelon (97103) v1	carwmB0296
Carg27152	Csa7G041920	Cucumber (Chinese Long) v2	carcuB0329
Carg27152	MELO3C018838	Melon (DHL92) v3.5.1	carmeB0304
Carg27152	ClCG02G002140	Watermelon (Charleston Gray)	carwcgB0296
Carg27152	CSPI07G03480	Wild cucumber (PI 183967)	carcpiB0335
Carg27152	Cucsa.148770	Cucumber (Gy14) v1	carcgyB0354
Carg27152	CmaCh11G018080	Cucurbita maxima (Rimu)	carcmaB0420
Carg27152	CmoCh11G018840	Cucurbita moschata (Rifu)	carcmoB0415
Carg27152	Lsi11G014280	Bottle gourd (USVL1VR-Ls)	carlsiB278
Carg27152	Cp4.1LG04g03700	Cucurbita pepo (Zucchini)	carcpeB0421
Carg27152	MELO3C018838.2	Melon (DHL92) v3.6.1	carmedB0315
Carg27152	CsaV3_7G003360	Cucumber (Chinese Long) v3	carcucB0335
Carg27152	Cla97C02G028540	Watermelon (97103) v2	carwmbB0312
Carg27152	Bhi05G001204	Wax gourd	carwgoB0390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27152	Cucumber (Gy14) v2	carcgybB0315