Carg27126 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27126
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein TIFY 10c-like
Location	Cucurbita_argyrosperma_scaffold_410 : 67648 .. 68181 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTAAAGGAATCGTGCCTCTTCCAGATCTGCCGCTACCGTCGTCTCCGACAAGGTTAGCAGATCAGTACCACCAGAGAACAACCTCCGACCAAAGTCTCGATGATTTACCATAGAAGAGAGCTTTCTCCTCCATCGATTCTTCGGAGAAAAGAAAGACAGGTATTAAACATTCATTTGAATTTTTCACAAATTTTTCTCTATTTCTTGAATTTCATCTTAATTTCAAATTTTCCCTGTTTTTTGTGGGTTTTTTTCAGAGTTACAGCCAGAGCACCATATCAAGTGAATTCCCGGCAATATTCTGGTTCTTCTACACCGACCGGAGAAAGCTACAGATTCAAGAACGGCGATGAGAAGAAAACCCAGCAATCTTCCAACCAATTTGATCTAAATTTGTAGGCAAAATTATAATCTAAGCGTCTGCTTAATTTCACCTTAAAATCCTGACATCCTCCTACCCTTCTCCAAGGAATATGAACAAGAACATTGCTCTGTAATTAATTCTCAGATTATAGATCATCATTTGT

mRNA sequence

ATGGCCGGTAAAGGAATCGTGCCTCTTCCAGATCTGCCGCTACCGTCGTCTCCGACAAGGTTAGCAGATCAGTACCACCAGAGAACAACCTCCGACCAAAAGAGCTTTCTCCTCCATCGATTCTTCGGAGAAAAGAAAGACAGAGTTACAGCCAGAGCACCATATCAAGTGAATTCCCGGCAATATTCTGGTTCTTCTACACCGACCGGAGAAAGCTACAGATTCAAGAACGGCGATGAGAAGAAAACCCAGCAATCTTCCAACCAATTTGATCTAAATTTGTAGGCAAAATTATAATCTAAGCGTCTGCTTAATTTCACCTTAAAATCCTGACATCCTCCTACCCTTCTCCAAGGAATATGAACAAGAACATTGCTCTGTAATTAATTCTCAGATTATAGATCATCATTTGT

Coding sequence (CDS)

ATGGCCGGTAAAGGAATCGTGCCTCTTCCAGATCTGCCGCTACCGTCGTCTCCGACAAGGTTAGCAGATCAGTACCACCAGAGAACAACCTCCGACCAAAAGAGCTTTCTCCTCCATCGATTCTTCGGAGAAAAGAAAGACAGAGTTACAGCCAGAGCACCATATCAAGTGAATTCCCGGCAATATTCTGGTTCTTCTACACCGACCGGAGAAAGCTACAGATTCAAGAACGGCGATGAGAAGAAAACCCAGCAATCTTCCAACCAATTTGATCTAAATTTGTAG

Protein sequence

MAGKGIVPLPDLPLPSSPTRLADQYHQRTTSDQKSFLLHRFFGEKKDRVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL

Homology

[Close]

BLAST of Carg27126 vs. NCBI nr
Match: XP_022955789.1 (protein TIFY 10b-like [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-22
Identity = 66/107 (61.68%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MAGKGIVPLPDLPLPSSPTRLADQYHQRTTSDQ-------------KSFLLHRFFGEKKD 60
           MAGKGIVP       S+ T ++D+  +  T+ +             +   LHRFF ++KD
Sbjct: 113 MAGKGIVP----SSRSAATVVSDKVTEPVTTREQPPTKVSDDLPIARRASLHRFFEKRKD 172

Query: 61  RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 95
           RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL
Sbjct: 173 RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 215

[Close]

BLAST of Carg27126 vs. NCBI nr
Match: XP_023527028.1 (protein TIFY 10b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-22
Identity = 66/107 (61.68%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MAGKGIVPLPDLPLPSSPTRLADQYHQRTTSDQ-------------KSFLLHRFFGEKKD 60
           MAGKGIVP       S+ T ++D+  +  T+ +             +   LHRFF ++KD
Sbjct: 113 MAGKGIVP----SSRSAATVVSDKVTEPVTTREQPPTKVSGDLPIARRASLHRFFEKRKD 172

Query: 61  RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 95
           RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL
Sbjct: 173 RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 215

[Close]

BLAST of Carg27126 vs. NCBI nr
Match: XP_022980722.1 (protein TIFY 10b-like [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 67/107 (62.62%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 1   MAGKGIVPLPDLPLPSSPTRLADQYHQR-TTSDQ------------KSFLLHRFFGEKKD 60
           MAGKGIVP       S+ T ++D+  +  TT +Q            +   LHRFF ++KD
Sbjct: 115 MAGKGIVP----SSRSAATVVSDKVTEPFTTREQPPTKVSGDLPIARRASLHRFFEKRKD 174

Query: 61  RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 95
           RVTARAPYQVNSRQYSGSSTPTGESYRFKNGD+KKTQQSSNQFDLNL
Sbjct: 175 RVTARAPYQVNSRQYSGSSTPTGESYRFKNGDDKKTQQSSNQFDLNL 217

[Close]

BLAST of Carg27126 vs. NCBI nr
Match: XP_022998211.1 (protein TIFY 10b-like [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 38  LHRFFGEKKDRVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 95
           LHRFF ++KDRV+ARAPYQ++S+QYS SS P GESYR   G EK  Q SSN FDLN+
Sbjct: 224 LHRFFEKRKDRVSARAPYQLDSQQYSSSSKPAGESYRVNIG-EKGNQLSSNHFDLNI 279

[Close]

BLAST of Carg27126 vs. NCBI nr
Match: XP_023525435.1 (protein TIFY 10b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 38  LHRFFGEKKDRVTARAPYQVNSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 95
           LHRFF ++KDRV+ARAPYQ++S+QYS SS P GE YR   G EK  Q SSN FDLN+
Sbjct: 174 LHRFFEKRKDRVSARAPYQLDSQQYSASSKPAGEGYRVNTG-EKGNQLSSNHFDLNI 229

[Close]

BLAST of Carg27126 vs. TAIR10
Match: AT1G72450.1 (jasmonate-zim-domain protein 6)

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 30/69 (43.48%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 4   KGIVPLPDLPLPSSPTRLAD----QYHQRTTSDQKSFLLHRFFGEKKDRVTARAPYQVNS 63
           K  V +PDL  P+S     D    Q HQ      +   LHRFF ++KDR  ARAPYQVN 
Sbjct: 154 KSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPYQVNQ 213

Query: 64  RQYSGSSTP 69
               GS  P
Sbjct: 214 H---GSHLP 219

[Close]

BLAST of Carg27126 vs. Swiss-Prot
Match: sp|Q9C9E3|TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana OX=3702 GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-04
Identity = 30/69 (43.48%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 4   KGIVPLPDLPLPSSPTRLAD----QYHQRTTSDQKSFLLHRFFGEKKDRVTARAPYQVNS 63
           K  V +PDL  P+S     D    Q HQ      +   LHRFF ++KDR  ARAPYQVN 
Sbjct: 154 KSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPYQVNQ 213

Query: 64  RQYSGSSTP 69
               GS  P
Sbjct: 214 H---GSHLP 219

[Close]

BLAST of Carg27126 vs. TrEMBL
Match: tr|A0A0A0LEE6|A0A0A0LEE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645940 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.8e-09
Identity = 46/97 (47.42%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 1   MAGKGIVPLPDLPLPSSPTRLADQYHQRTTSD---QKSFLLHRFFGEKKDRVTARAPYQV 60
           MAGKGI P       +      +Q   + +SD    +   LHRFF ++KDRV AR PYQV
Sbjct: 120 MAGKGIAPSSRSITTAVSDNGGEQPLTKVSSDLPIARRASLHRFFEKRKDRVAARGPYQV 179

Query: 61  NSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 95
           N      SS P+GESYRFK    K+ +QSS QFDLNL
Sbjct: 180 N---LQASSKPSGESYRFK----KENEQSSKQFDLNL 209

[Close]

BLAST of Carg27126 vs. TrEMBL
Match: tr|A0A1S3CCP0|A0A1S3CCP0_CUCME (protein TIFY 10c-like OS=Cucumis melo OX=3656 GN=LOC103499178 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1   MAGKGIVPLPDLPLPSSPTRLADQYHQRTTSD---QKSFLLHRFFGEKKDRVTARAPYQV 60
           MAGKGI P       +      +Q   + +SD    +   LHRFF ++KDRV AR PYQV
Sbjct: 120 MAGKGIAPSSRSIATAVSDNGGEQPLTKVSSDLPIARRASLHRFFEKRKDRVAARGPYQV 179

Query: 61  NSRQYSGSSTPTGESYRFKNGDEKKTQQSSNQFDLNL 95
           N      SS P+GESYR K G+E    QSS QFDLNL
Sbjct: 180 N---LQASSKPSGESYRLKKGNE----QSSKQFDLNL 209

The following BLAST results are available for this feature:

BLAST of Carg27126 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955789.1	3.6e-22	61.68	protein TIFY 10b-like [Cucurbita moschata]	[more]
XP_023527028.1	3.6e-22	61.68	protein TIFY 10b-like [Cucurbita pepo subsp. pepo]	[more]
XP_022980722.1	1.0e-21	62.62	protein TIFY 10b-like [Cucurbita maxima]	[more]
XP_022998211.1	1.6e-09	66.67	protein TIFY 10b-like [Cucurbita maxima]	[more]
XP_023525435.1	2.1e-09	64.91	protein TIFY 10b-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27126 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72450.1	2.2e-05	43.48	jasmonate-zim-domain protein 6	[more]

BLAST of Carg27126 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C9E3\|TI11B_ARATH	3.9e-04	43.48	Protein TIFY 11B OS=Arabidopsis thaliana OX=3702 GN=TIFY11B PE=1 SV=1	[more]

BLAST of Carg27126 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEE6\|A0A0A0LEE6_CUCSA	8.8e-09	47.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645940 PE=4 SV=1	[more]
tr\|A0A1S3CCP0\|A0A1S3CCP0_CUCME	2.0e-08	47.42	protein TIFY 10c-like OS=Cucumis melo OX=3656 GN=LOC103499178 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27126-RA	Carg27126-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27126	CmaCh14G012000	Cucurbita maxima (Rimu)	carcmaB0647
Carg27126	CmoCh14G012240	Cucurbita moschata (Rifu)	carcmoB0629
Carg27126	Cp4.1LG03g14930	Cucurbita pepo (Zucchini)	carcpeB0653
Carg27126	Cla97C07G141340	Watermelon (97103) v2	carwmbB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27126	Cucumber (Gy14) v2	carcgybB0474
Carg27126	Cucumber (Gy14) v1	carcgyB0536
Carg27126	Cucurbita maxima (Rimu)	carcmaB0648
Carg27126	Cucurbita moschata (Rifu)	carcmoB0630
Carg27126	Cucurbita pepo (Zucchini)	carcpeB0652
Carg27126	Wild cucumber (PI 183967)	carcpiB0503
Carg27126	Cucumber (Chinese Long) v2	carcuB0497
Carg27126	Cucumber (Chinese Long) v3	carcucB0500
Carg27126	Bottle gourd (USVL1VR-Ls)	carlsiB421
Carg27126	Melon (DHL92) v3.5.1	carmeB0470
Carg27126	Melon (DHL92) v3.6.1	carmedB0473
Carg27126	Watermelon (Charleston Gray)	carwcgB0452
Carg27126	Watermelon (97103) v1	carwmB0462