Carg27125 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27125
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Oligouridylate-binding protein like
Location	Cucurbita_argyrosperma_scaffold_410 : 54809 .. 64859 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACTTCCTCAAGCTCTCTCTCTCTTCCCCGTCTTGGAGGTCGTTGACACGATCTTCGTTCCAGACCAGTGCCCTAATCTTTCGCTTTGTCGGAAAATTAGACTTACTGCAATTTAAGAGCATAAATCCGAGCGGGCAGAAACCAAAAAAATGCAGCATCAGAGGCTGAAGCAGCAGCAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAGCAGTCTCTCTATCACCCTGGCCTCCTAGCTCCTCCGCAGGTCCCAGCTCCTTCCCATTTGTAGTTTCTTCCTTTTCATCACTGATTTATATTCTTTACGTTTGATTGTTCCCTTTTTCTCCATTGATTTTGAGCTTGATTGCTTCTTCTTAGAATAACGGGATGAGGGTTAGTTTATGTGTTTTCTTGCTACGAGCCTTAGTGTGGAGTTATACTGGACACTTGAATTATTTACAAATTTGAAGGGGAGCCTGCATTCGTATGATATGTCGCTTTATTTTTAAGTTTTCACTTCACATTACCCGGTACGGTATCATGTCAATCAGGGGCGGACCTAAGAATTTTCCTAGGGGGAATTTTTACGTTCTAACTTTTTATATATAATCTTGGGCAAAGCTGTTTTAGTCTTATATTCTTTCCCTAAGTTTATGTTCTAATAAAATCTTTTCTCCTGGTTGATTGTAAGTTCGTGATAACATCTGAGTTATGATAGGATTCATTTCTGATAATGTTATTGCGCGTTGTCATCATACGAGTTTCCTTTACACCCAAATGAATGATGTAGGATTAGGCAAATTGTCCTTGAGATTAGTCGAGGTGCGTGCAAGTTATCCCGGACACCCACAAATTTTAAAAAAATGTTATTAGCAGCTGTTGTAGTAAAGAGGATTAGCTGCTTCCCTATGTACTGTTCCAAACAATATGTATTTTCTTTTCACTTGTACGTGATTGTGGTTGGTTTATTTTGTTTTCCTCCTTCCCATTAGAGTTCGTTCGGGTACTTTTTCTAGTTGGATTAGTTGGAAAACATATTTTAAATTCAGATTCTGACCTTCTTTCTATCACGGAGATGAGGATTCAGTATAATAACATTCTGATCTGGGAAGTGTCTTGAAAGGAATCCTGGAAACTTGGGACGATCAAAATGATAGAACCCTGGGTTTAGTTAGCCATACAATCTTTCAAGTTGGTTAGCTGGCAGTAGTTTCAGTTTGTGATTGTATTTTGGTTGCATGGTTAAACATTCACAGTTTTCTTCGCTACAAATAGAAAGCTTGTATATAAAGTAGGTAACTAAGCAAATACATTTTTCGAGAAGTTATGGAGGTACTAAACAAAGAAGGATGGAATAAATGCATTTTATTCTTAGTTTGTTAAATAAATGGCATGAATACCTACATCCTGTTCAGTGAATAGGATAAATGTCTGTCTCTTCTTCATATTATTTTAGTGATTCATTTATCCAAGCTTATGATTTCAACTATTTGAACGGTTTTGAAAATTGTATGTGCGTTTACTTGGACTAGTTTGGATTGTTTGTAATAATCTCACATAAGCTAGAGAGAGTTCTTCTCATTAAAATAATCTTCGGAATACAAGGCTATTTAAAGAGGAAAAGTAACAATTTGCTTAACAATAAAATCAGAACTAATAACAAAACATAACTAATACAGTGATCTAATAGCAAAACATATCAAATACAGAGATTAGTTATTGTTGTTTGTTCTCAAAAAATTTCTGAAAAATATAGAGATATTCATAATTCGATTTGCTTCACATCAGGTTCTTTTTCTTGCATACAGGCATTAGCATACCTCTTTTAACTTCTCAGTATTAGGTTGGAAAACCTCATGGAACAATTTTGAATCCTACAGCTCCTGGTCGTTTTCCGTTATACATTTTTCTCATTTTTAGTTTGCCCTTTCTTTTTGCAGATTGAGCCAATTCCTAGTGGAAATCTACCTCCTGGTTTTGATGCAAGCACTTGCCGCAGTGTGTGAGTGTTTGGATGTTACGATACGTTTTTTCTTTTTTTAATTGTACATTTTCATTCTTGTTAAATTTAATTTAATTCTTTTTGCTTTATTTTGATTTCTTGCTGCATCTCATAAAGCTTGTTATCAGTCTCTTTGCACTACCACTGAAAAGATTTCTTTTGCTATAGTCGTTTCATCTGTTTCCATATTGCGATTAAATCCTGTTCTTGTTATCCTGTGTCATTTAAATGATGATGATAGGTATAGTTTGTGCACTTACTAAATTTATGAGTTATATATAGTTGAAATACTAATTAACTTCTCTCATCTCATCTCTGATCCTTCTTTGTCACCGCCATGTGATTTATTGCATAATTGCTGTTGGATAATTCAGATATGTTGGAAACATCCACGTACAAGTTACAGAACCACTTCTTCAAGAGGTTTTTGGTAGTATTGGTCTCGTTGAAGGTTGTAAGCTTGTAAGGAAGGAGAAGGTTTGTCTTTTGCCGTGCATATTATCCTTCTTCAAATTCTAGAGTACTGGACATGTTGGAAATTGCTTATTTGTTCTATGTAGTAAGCTCATTTGTGTATTCAGTTGTATTCATACTGACATACATCAATGTTGCCTCTGCCTTTTGAAGTCATCCTATGGCTTTGTCCACTACTTCGATCGTAGGTCAGCTGCCCTGGCTATTTTGTCACTCAATGGGAGGCATTTGTGAGTAACGATAAGATTATGCATATATTTTTTTTTTCTTAAGTCTTCATATTTTGTAGTATCATCTCGAACATATTATGTGCGTTGCAGATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTAGCCAGAGGGAGGACACATCAGGTTGGACTTTCAAACTATTATTATCTCATTTACTGATTTTACGATGTTTTTTTAATAACAAAACAAAAATTCCTTAATCATTTAAATATTTTGTTTCTCTGTGCAGGTCATTTCAACATTTTTGTTGGCGATCTTAGCGCTGAAGTCACTGATGCTATGTTGTTTGCATGCTTTTCTGCTTACTCCAGTTGCTCGTAAGCATCTTCTCTTTGAATATTAAACATCATTTCTCATCTGCCCTCTTGAACTATTCATTTCATAACTCCCTAACTGTGAGTAATATGATTAATTGTGTTTTTCTTATTATAGATTTGTTGAAATTATTAAATTTATTAAAAAAATATATGCATACTTGTAAGCTACCATATAAGCTACCATGTGAGCTACAAACAGGGTTACATATAAGCTACCAATGCAGCTTCCTCTTGGAGTATGTAGAAAAACAGTTTCCCGAACAAAAACCGGTAACAGAACACCTAAACTCAACAAAATCGAAAGAACTCAATCATGACTTGGGTAGCTGACAAACAAGAAGCCGTTATTCTTTCCTCTTAGGAGTTCAACAGCTTTTTCAACAAGATGGTTTCTGTCTGGCCAACCCTTTCAATGAAGCTTTAAGTGAGATGAACCTAAATTTCTTCCAATCCTCAGGGTGCTCCTTTTTGTGGACTTGTTCTTTTTTTTTTCGTATGTCCTTATATTCTTTCATTTCTTCTCAATGAATGTTGGTTCATAAAATAGAAATATAAGGAGACTCAAGAGTGACCTCAACTCAAAGCTGGAAGGAAATTCTAAAAAGACAAAAGGATAGCAGAGTCCTTTCCACCAATTCTTGAAATAACCTGTCTGATCAAAGGCCTAAATGAAAATATTATCTACACCAGACTAATTCCTCTCACTTTTCCTCGCCAACATTCTATCTTAGCAATCAGCGAAAGTGTCATCCTTTCTTAAGATTCATTGATAGACTTAAAAAAAAAAGGAGTCTTCAAACAATTCTTATGGACCAATGCAACTTACCCACACTGTTTGCTAATTTCAGAGATGCAAGAGTTATGTGGGATCAAAAGACTGGGCGCTCAAGAGGGTTTGGATTTGTTTCCTTCCGAAACCAGCAGGTTTTGAATTTCTTCTCAATGCCCCGCTAACTGTTCGTTTCTTTAATTTTGTTCTGAAGAATGAACATTTTGATGTACCTCTTTCAGGAAGCTCAAAGTGCAATAAATGACTTATCTGGTATGTTCTGTTTGTTATTTTTTTCACTTAATGGTTGTCTGCCAATCCTTGTTATGTCTTTTGGGATTTAGTTACTGTGATGGATTTATGCTTGCAAACTCATCAATCTGACAACTTATTGGTCTTATTTATTTTATTTACTCAGGTAAGTGGCTTGGGAGTAAACAGATACGTTGTAACTGGGCAGCCAAAGGTGCTGGAGTGAATGAAGATAAACAGAGCTCAGATACCAAAAGTGTGGTAGAACTATCAAATGGCTCATCTGGTGAGTTTTGTACAGAACCTGGACCACATATCATGCATATGACTTTCTTTTATTTCATCAGTTACTGCAGAGATTCTTACTTTTGCTATTATTTTAACAACCTAAAATTGGATTGTGATTCATGTATTTGACTTACAAAAACTGTTTCTGTGCTAGTGTGAAATTTGGTTCTCTGTGACCTTGTTATTAGAGTAAGATTTTAAAAGCTTACTTCATTGCCTTGATCGTGCAGAAGATGGTAAAGAGTCTGTAAATAATGAGGCTCCGGAGAACAACCTTCAATATACTACTGTATATGTGGGTAATCTCGCCCCAGAGGTGAGAAACTATTTTCATTATTGTATGATCTAACGATTTAGCTCTTTAACATGCATGTTGAATGTACATTAGCACAGAGAGCCCTTTATAGGACTCCATGTATAGTGGAAAAGATGTTTGGGGTGCTATCATATTTCTTGTGGAAGATGTTTGATAAAATTCTCCTAAATATCATCGTTCAAGTAGATATTTCATTTGGAATCAATGATTTTCTTGTCTGCAGGTCACTCAACTTGACCTACATCGCCATTTTCATTCTCTTGGTGCTGGGGTCATTGAGGAAGTTCGAACTCAGCGGGATAAAGGATTTGGTTTTGTGAGGTATAATACTCATGCTGAGGCAGCTCTGGCTATTCAAATGGGAAATACTCGGTCTTTTCTCTGTGGAAGGCAAATAAAGGTATTGTTCTGCTTTATATGGTGAAGCTACTCTCTTACTGCTAAATGTTATATTGTCCATATTCCATAGATTTGGGTCTGAACTGATGTATTTATGCCACCTGGAAATAAAATTGAAGGTGCATAAGTCTTGAAATTGGACAGATGGCTCCCTTTTGGGTGCATAGTCACTGCCTTTTCTGTTTACAAATTTTCATATACGTAAATGCATCCTCATCCACTGATGGAGAAAAGTTAACAAGTTTACTCATCAATGGTCAATTAAGCGTCAATTGCTCTCGTTTATTTTCACTTACAACTGTCGAATTTCCAAGTCTATCTACAATCTTCTAGGATCCCCTGGAAATTTTGTCAGAAATTAACTGGTGCATAATTGTACTAATGATGACCATCCTTCCCCCATTGGCCCGCTAGATGGACCTCACTGCCCCTCCTCCTTCTGATCGTCTCTGCGACCTTCATCTTCCCCTCTCCCCCCAAGATTCCTTACAGTGTTCTTCATTTCATCTTCTCTGCGTTCCTATGCTTTTTATGCATTGAGTGAAAAACCTCTCTTTATGTATTGAAGTTGATAAAGCCTATTGAGCTGACAATGCCGAGCTACTGAGTAAAGATAACACACACTCAATGTCCATTCATTGGACTGCACTCCCCAACTCGTATTAGTAACTTTTCTCCCACAACCAGGTTGTTTTGAGAGTTTCATCATGATTCCTATACTTTTGTGGGTTTTTAAATCATCTAACTAAAAAGCTCTCTCACTGACTCTAAGGAATGATTCGTCTGGCTCACCCATTGGTTGATCATTCCGGCTGGAGGGTCAAATCATGGTTGGGCCTCCTGCCTAAAGCTCCTTCTCAGCTGCCTTGGCCCCCAGTCTTTTTTCATCCCTAAACTCTTCCGCTCCATGTCTTTGTTAGAACGAATCACTTCAGCCCATTACACATTCTCTTTAGTGCAGGCAGTATAAATTGGGCCCCATCATTTTTAAGTTTGAGATTTATGATGAGGCTGAAACTTCTCGTGGACCATCTTAGAAAATACCGCTTCACCTTTGGCAATGTTCAGAAGAGAACATGATCTCAGCAAAATCAGTGCCATAGCCTCTCAAGAACTCTTCCTTTCGTTCCTTTCTCAAAAAAATCAGAATATCCCTGTGTTGAAGAGACAACTTGCAGTGACGAAATCCTCAGGAGGTAAAGTAGCATCACGAGTCTCAAGGAGGGAGACGAGAATACCATATATTTCCGGTTTGTTTTCTCTCTGATGCCAAAAGTGATTTTTGAGAGAGTTGATGAGCAGGTATTATGCTGGTAAATGCGAGAGATACTGAGGAAGCCTTCATCGATAGCTTTGCTAAGCCATCATCCAAAACCCCACTCAAAAGATACACCCCGAACCCAATAAACCTCAATCAGAGCTTTTTTTTTCTTCTTGAGCTTCTCTTCATTGAAGATGAAATTCTGGCGGCTAAGTCCCCTAGCTGGTAAGGATTTTCCATTGTTATTCTTCGTTGCATGTTGGAATACTCTCAAATCAGATATAATGAAGGCGTTCTAGGACTTCTTTTTCCTTTATAGAATGGTATTATTATGCTTAGTGTCAGCAAAACCTATATATATATATGCTTACCCTCCCAAAAGTTGGAAGCCAAGAGTGTGAAAGGCTACGCAGAGCCATCTGCATCACCACTAGTCTTACCTCATGACATCACCTAGCATCAGTTTACTTGATTATTGATGTCTGACAAATCCTAAATTCAAGCCTTTCAGCGTTGAATTATTTGAAGGTTTAGAACCCAACCCTGACAGTAAGTCTTGATGAAAAAGATTTCCTATTTTGGGACTTTATCCAATCTTTGAAAGGTTTTTTGGTAATAGACGGAAATCTTGGTCTTTGGTTGCCTCTCAAATGGCAACGGTTCCATTCTTTTATCATCAATGGTCGTCCAAGGGGAAAATTTCAGGCCTCAACAGGTAGTATACAAAGTCGACCTCTCTTCCCCTTCATCTTTAGTTTCATGATGTTTATTATTTGTTATTTATTTGCTTATTATAATAATTTTTAGCCGGATCCTTCACAAAAGTCAATCCCTCTGGTTTCCCAGATGGCTTCTCTGTTGGCAGCTGCTCCATAAACCACCCACGTTATGTTGATAGCGCCATTATTTTTTCCTACGGATTTAATTGGGGACTTAATTGGACCGAGCCCTGGTATAAAAAACCTAGGTGATAATCTTCAAATTCAGAATTAAAAATGGGTAATCCTCTTCCCATCAAAATGTGACTTATCTTCTCAAGGCCATAAAATACTCTGATGCCTCCTCTGACTGAAAACATAAACCTTTCTAGATTGAATCTCCTTGGTCTCATTCTGCCAATGTCCTCCGAAATAGTGCCAACATCCTCAATGTTCCTCAATCACTTGGCCCTCGGACTATCTCGGTCTCAATTTAAATGGCTCCCCCAAATACGTTTCCTTTTGGGAACTAACCATTGATGTGGTAGGTACACCCTTATTCTCGCTTCCTTCTTAAATCTCCCATTTTACTACATAGTCCTTTTCAAGTCGCCAAGAAACGTCATCTCCACTGTTGTCAAATTTCTTCAGAGCTTTTGCGATGCCGACAATCCCTTCATAAGTTCCCATATAGTCAACTGGCAAAATGGCTTTTGCTCCATCATAGGTTTTGGAGACCTATTCCAACATAGCCAGGTATAGCCAAGACGGCATTTTGCTGTAGAAAAGGAAGCTCTTTAGAGAAGATATATTTGGCCAAGTATTCCCTTACCCCGCAGATTGGTGGCCTAATTTTCACTTGAATATCAGGCTAAAGTTTATTCAGTTTGTGCTTCCCAAAGACTACGGGTGCTACGAGGGCTCCATTTCAGTGGTCAAGCTAGAATTATTTGAACTGAAGTGGTGTACGCTATTATTTGGAGATGGTTTGAGAGTATCGAGAACTTTTTTTAAAAAAATTATATATATAAGCTGAATTTTAAACTTTTTTATTTTTTATTTTTTTTGGAAAAATTAGACATAACTTTTGGAGCCTTATTGAACTCTTCTCTTCTTCTTGGCGTCTTCTTTCTAAAATCATTTTAAATTATATGAGCTTTTGCATAACTTTTGCTAAGTGGAAGCATTAATGGTAACCCATTGGTATTGTCTAGTGGGGATATTTTTTTTACTTTTTATTTTTTTTTCATGTCAAAGAAACAGATAAATTTTCATTGATTGAATGAAGTCTTGGGGGTATATCTCATCTACCCTTTCTGTTATCTTCTTTTTATTTTACTTTTCTATGTTTCCTCTAAAAGAAAAGAAATCTCAGCACATCCACAATTTGTTTTTGGGTTGTCAACGGTCTTCAATCCTCAAAAATTTTGACGGATGCCTGGAGATGTCCCTCTTCCCTCTTTCCAAATCTTTACAGCTTAAACTTCTGATGTCAATCTCTACGCTCATCTTTTGGAACAGGGAGCTTTCTGTGTGGAACATAAATATCAGAAGGCAACTTAAAGACAATGGTGTTCCAAGATTGGCTGTCAGTTTCTTTCATGGGTTTCATCGATGGTTGTTGCCTAACATCGGTTCCAGATTCTTGGCACTAGCCTTTCAAACCTGTTGGGTTCTTTAGTACCAAATATCCTCCAAGACTTAAATACTCCATGCAAAGGCATTATTCCAAGTTCATATAAATTTACAAGGAAAGGGGAACTTCCTTAGAAAATTTGGGATCTATAAAAGTATGAGAAACCCAAGAGAAGCTCCAAAGAAGGAATACGCAGCTGATCATATCTCCCTTACTAGATGTGTTGTGCAAGAACAGACTCAGAATCCCAGGATTACTTAATATTCCACTGCGGGGGTGTGTCCTCCTTTTGGCATTTCCTCTTAACTCTTAACCTCTTTCGATGCAGCCCTGGTCCTTATTCCAGAAGGTAAACTTAAACCTTCTATCCCTCGTGCTCTCTGACCCCTTCAAGATTTTTTTGGATCGTATATCAATCAACAGTTTAATTCTTTGAGATTATGGTGGCTGGAGACAAACCAATGAATTTTTGTAAGTCAAGAAATGAATATCATGAATCTTCTAAATCTTGATTATCCTAAATGCCGCTGATTGTGTAGAAGATAATACAAAAAAAGCCCAAGACTTCATTCAATTCCTATGCTATCTCATCAACAACTCTGCTCTCTGAATGTTATGTTCCTAGCTTGGATGGGGCTTTTGTTTTGTCTCTTTAGTCTATTTCACACATATAATGAAATTTTGTTTCTTTTCAGCCTTACTACTTACTACTGGGATTTGTCCTTTTTAATTTAGTACCACTATTTATTGTGAAAGCGTGTACCACACTCAATTTCAGCAATATGGAAAACATTTTTGAAGTTTGTAGTTGAGATTCAAAATAGAAAAGAAACATGAGAATTGGTTTTTGATCTTTATTGCTAGTGCTCTTGGGGTAGCAAACCCACACCACCCGGAACAGCATCCAATCCACTTCCACTACCGGCAATGGCTTCCACTCCTGGCCTTTCAGCAACTGACCTATTGGCTTATGAGCGGCAACTAGCACTAAGCAAGATGGGTGGTGTCCATGCAGCACTTATGCACCCTCAGGGTCATCCTCTGAAGCAAGCACCAATGGGAATTGGAGCAGCTGCAGCTAGCCAAGCATTATATGATGGTGGCTTCCAGAACATTTCATCCCAGCAACTTATGTACTACCAGTAGTAAATATGGCTTAGCTTTTGCTTTTGCTTTTGCTTTTGTTTGATGAAGTCTATTTATTATATCCACTGGCTTTTCCTGAGATAATGAGCCTTCAGTGCGCCCTCTATATCCGACTTTTTCCTTCTTTTGGTGATCAGATTCTTTTACACCTACAGATGGAAAGTATGTTTGTTACACCTTTTTTTAATGTTAGTAGTGCCAGTGTCAGCGGCTATGGGCATTAGAGGAAGCCTGTTTACCAATCATAAAG

mRNA sequence

TAACTTCCTCAAGCTCTCTCTCTCTTCCCCGTCTTGGAGGTCGTTGACACGATCTTCGTTCCAGACCAGTGCCCTAATCTTTCGCTTTGTCGGAAAATTAGACTTACTGCAATTTAAGAGCATAAATCCGAGCGGGCAGAAACCAAAAAAATGCAGCATCAGAGGCTGAAGCAGCAGCAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAGCAGTCTCTCTATCACCCTGGCCTCCTAGCTCCTCCGCAGATTGAGCCAATTCCTAGTGGAAATCTACCTCCTGGTTTTGATGCAAGCACTTGCCGCAGTGTATATGTTGGAAACATCCACGTACAAGTTACAGAACCACTTCTTCAAGAGGTTTTTGGTAGTATTGGTCTCGTTGAAGGTTGTAAGCTTGTAAGGAAGGAGAAGTCATCCTATGGCTTTGTCCACTACTTCGATCGTAGGTCAGCTGCCCTGGCTATTTTGTCACTCAATGGGAGGCATTTATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTAGCCAGAGGGAGGACACATCAGGTCATTTCAACATTTTTGTTGGCGATCTTAGCGCTGAAGTCACTGATGCTATGTTGTTTGCATGCTTTTCTGCTTACTCCAGTTGCTCAGATGCAAGAGTTATGTGGGATCAAAAGACTGGGCGCTCAAGAGGGTTTGGATTTGTTTCCTTCCGAAACCAGCAGAATGAACATTTTGATGTACCTCTTTCAGGAAGCTCAAAGTGCAATAAATGACTTATCTGGTAAGTGGCTTGGGAGTAAACAGATACGTTGTAACTGGGCAGCCAAAGGTGCTGGAGTGAATGAAGATAAACAGAGCTCAGATACCAAAAGTGTGGTAGAACTATCAAATGGCTCATCTGAAGATGGTAAAGAGTCTGTAAATAATGAGGCTCCGGAGAACAACCTTCAATATACTACTGTATATGTGGGTAATCTCGCCCCAGAGGTCACTCAACTTGACCTACATCGCCATTTTCATTCTCTTGGTGCTGGGGTCATTGAGGAAGTTCGAACTCAGCGGGATAAAGGATTTGGTTTTGTGAGGTATAATACTCATGCTGAGGCAGCTCTGGCTATTCAAATGGGAAATACTCGGTCTTTTCTCTGTGGAAGGCAAATAAAGTGCTCTTGGGGTAGCAAACCCACACCACCCGGAACAGCATCCAATCCACTTCCACTACCGGCAATGGCTTCCACTCCTGGCCTTTCAGCAACTGACCTATTGGCTTATGAGCGGCAACTAGCACTAAGCAAGATGGGTGGTGTCCATGCAGCACTTATGCACCCTCAGGGTCATCCTCTGAAGCAAGCACCAATGGGAATTGGAGCAGCTGCAGCTAGCCAAGCATTATATGATGGTGGCTTCCAGAACATTTCATCCCAGCAACTTATGTACTACCAGTAGTAAATATGGCTTAGCTTTTGCTTTTGCTTTTGCTTTTGTTTGATGAAGTCTATTTATTATATCCACTGGCTTTTCCTGAGATAATGAGCCTTCAGTGCGCCCTCTATATCCGACTTTTTCCTTCTTTTGGTGATCAGATTCTTTTACACCTACAGATGGAAAGTATGTTTGTTACACCTTTTTTTAATGTTAGTAGTGCCAGTGTCAGCGGCTATGGGCATTAGAGGAAGCCTGTTTACCAATCATAAAG

Coding sequence (CDS)

ATGGCTTTGTCCACTACTTCGATCGTAGGTCAGCTGCCCTGGCTATTTTGTCACTCAATGGGAGGCATTTATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTAGCCAGAGGGAGGACACATCAGGTCATTTCAACATTTTTGTTGGCGATCTTAGCGCTGAAGTCACTGATGCTATGTTGTTTGCATGCTTTTCTGCTTACTCCAGTTGCTCAGATGCAAGAGTTATGTGGGATCAAAAGACTGGGCGCTCAAGAGGGTTTGGATTTGTTTCCTTCCGAAACCAGCAGAATGAACATTTTGATGTACCTCTTTCAGGAAGCTCAAAGTGCAATAAATGACTTATCTGGTAAGTGGCTTGGGAGTAAACAGATACGTTGTAACTGGGCAGCCAAAGGTGCTGGAGTGAATGAAGATAAACAGAGCTCAGATACCAAAAGTGTGGTAGAACTATCAAATGGCTCATCTGAAGATGGTAAAGAGTCTGTAAATAATGAGGCTCCGGAGAACAACCTTCAATATACTACTGTATATGTGGGTAATCTCGCCCCAGAGGTCACTCAACTTGACCTACATCGCCATTTTCATTCTCTTGGTGCTGGGGTCATTGAGGAAGTTCGAACTCAGCGGGATAAAGGATTTGGTTTTGTGAGGTATAATACTCATGCTGAGGCAGCTCTGGCTATTCAAATGGGAAATACTCGGTCTTTTCTCTGTGGAAGGCAAATAAAGTGCTCTTGGGGTAGCAAACCCACACCACCCGGAACAGCATCCAATCCACTTCCACTACCGGCAATGGCTTCCACTCCTGGCCTTTCAGCAACTGACCTATTGGCTTATGAGCGGCAACTAGCACTAAGCAAGATGGGTGGTGTCCATGCAGCACTTATGCACCCTCAGGGTCATCCTCTGAAGCAAGCACCAATGGGAATTGGAGCAGCTGCAGCTAGCCAAGCATTATATGATGGTGGCTTCCAGAACATTTCATCCCAGCAACTTATGTACTACCAGTAG

Protein sequence

MALSTTSIVGQLPWLFCHSMGGIYLGSLSKLTGHMLVARGRTHQVISTFLLAILALKSLMLCCLHAFLLTPVAQMQELCGIKRLGAQEGLDLFPSETSRMNILMYLFQEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNNEAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEAALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

Homology

[Close]

BLAST of Carg27125 vs. NCBI nr
Match: XP_022955787.1 (oligouridylate-binding protein 1B-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN
Sbjct: 189 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 248

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA
Sbjct: 249 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 308

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA
Sbjct: 309 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 368

Query: 288 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Sbjct: 369 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 420

[Close]

BLAST of Carg27125 vs. NCBI nr
Match: XP_023527002.1 (oligouridylate-binding protein 1B-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.5 bits (1186), Expect = 2.5e-126
Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVE+SNGSSEDGKESVNN
Sbjct: 189 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVEISNGSSEDGKESVNN 248

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA
Sbjct: 249 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 308

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA
Sbjct: 309 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 368

Query: 288 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Sbjct: 369 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 420

[Close]

BLAST of Carg27125 vs. NCBI nr
Match: XP_022980633.1 (oligouridylate-binding protein 1B-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 459.1 bits (1180), Expect = 1.3e-125
Identity = 230/232 (99.14%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN
Sbjct: 189 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 248

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRY+THAEA
Sbjct: 249 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYSTHAEA 308

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQL+
Sbjct: 309 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLS 368

Query: 288 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Sbjct: 369 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 420

[Close]

BLAST of Carg27125 vs. NCBI nr
Match: XP_022955788.1 (oligouridylate-binding protein 1B-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 456.1 bits (1172), Expect = 1.1e-124
Identity = 231/232 (99.57%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSS DGKESVNN
Sbjct: 189 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSS-DGKESVNN 248

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA
Sbjct: 249 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 308

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA
Sbjct: 309 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 368

Query: 288 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Sbjct: 369 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 419

[Close]

BLAST of Carg27125 vs. NCBI nr
Match: XP_023527003.1 (oligouridylate-binding protein 1B-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455.3 bits (1170), Expect = 1.8e-124
Identity = 230/232 (99.14%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVE+SNGSS DGKESVNN
Sbjct: 189 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVEISNGSS-DGKESVNN 248

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA
Sbjct: 249 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 308

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA
Sbjct: 309 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 368

Query: 288 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Sbjct: 369 LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 419

[Close]

BLAST of Carg27125 vs. TAIR10
Match: AT1G17370.1 (oligouridylate binding protein 1B)

HSP 1 Score: 333.2 bits (853), Expect = 1.9e-91
Identity = 169/233 (72.53%), Postives = 196/233 (84.12%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQ+AI++++GKWLGS+QIRCNWA KGA   EDKQSSD+KSVVEL++G SEDGK++ N 
Sbjct: 191 QDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNG 250

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENN QYTTVYVGNLAPEV+Q+DLHRHFHSLGAGVIEEVR QRDKGFGFVRY+TH EA
Sbjct: 251 EAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEA 310

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNT S+L GRQ+KCSWGSKPTP GTASNPL         G SA+DLLAYERQLA
Sbjct: 311 ALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNPLXXXXXXXXXGFSASDLLAYERQLA 370

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           +SKM G++  + HPQG H  KQA M  GA  ++QA+YDGG+QN  +QQLMYYQ
Sbjct: 371 MSKMAGMNPMMHHPQGQHAFKQAAM--GATGSNQAIYDGGYQN--AQQLMYYQ 419

[Close]

BLAST of Carg27125 vs. TAIR10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 330.9 bits (847), Expect = 9.4e-91
Identity = 173/234 (73.93%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQ+AIN+++GKWL S+QIRCNWA KGA   +DK SSD KSVVEL+ GSSEDGKE++N 
Sbjct: 196 QDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNE 255

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           E PENN Q+TTVYVGNLAPEVTQLDLHR+FH+LGAGVIEEVR QRDKGFGFVRYNTH EA
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEA 315

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNT+ +L  RQIKCSWG+KPTPPGTASNPL         GLSA DLL YERQLA
Sbjct: 316 ALAIQMGNTQPYLFNRQIKCSWGNKPTPPGTASNPLXXXXXXXXXGLSAADLLNYERQLA 375

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ 340
           LSKM  V+ ALMH QG HPL+QA  GI AA A+ A+YDGGFQN+ ++QQLMYYQ
Sbjct: 376 LSKMASVN-ALMHQQGQHPLRQA-HGINAAGATAAMYDGGFQNVAAAQQLMYYQ 427

[Close]

BLAST of Carg27125 vs. TAIR10
Match: AT1G54080.2 (oligouridylate-binding protein 1A)

HSP 1 Score: 321.2 bits (822), Expect = 7.5e-88
Identity = 165/235 (70.21%), Postives = 192/235 (81.70%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQ+AIN+++GKW+ S+QIRCNWA KGA   EDK SSD KSVVEL+NGSSEDG+E  N 
Sbjct: 204 QDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNE 263

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           +APENN Q+TTVYVGNL+PEVTQLDLHR F++LGAGVIEEVR QRDKGFGFVRYNTH EA
Sbjct: 264 DAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEA 323

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGN + FL  RQI+CSWG+KPTP GTASNPLP PA AS P LSA DLLAYERQLA
Sbjct: 324 ALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLA 383

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ 340
           L+K        MHPQ  H L+QA +G+  A  + A+YDGG+QN+++  QQLMYYQ
Sbjct: 384 LAK--------MHPQAQHSLRQAGLGVNVAGGTAAMYDGGYQNVAAAHQQLMYYQ 430

[Close]

BLAST of Carg27125 vs. TAIR10
Match: AT4G13860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06
Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 177 TTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRTQRDKGFGFVRYNTHAEAALAIQ 236
           T VYVGNL+P  T   L   F   G    A V+ +  T R +GFGFV Y++H+EA  A+ 
Sbjct: 3   TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62

Query: 237 MGNTRSFLCGRQI 246
            G     L GR++
Sbjct: 63  -GMDGKELNGRRV 74

[Close]

BLAST of Carg27125 vs. TAIR10
Match: AT5G19350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05
Identity = 42/159 (26.42%), Postives = 76/159 (47.80%), Query Frame = 0


Query: 109 EAQSAINDLSGKWLGSKQIRCNWAA--KGAGVNEDKQSSDTKSVVELSNGSSEDGKESVN 168
           E   A+ +++G +  ++ +R + A   K  GV   +Q   TK+V  ++  S+        
Sbjct: 170 ERNRAMAEMNGLYCSTRPMRISAATPKKNVGV---QQQYVTKAVYPVTVPSAVAAPVQAY 229

Query: 169 NEAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAE 228
              PE+++  TT+ V NL   VT+ +L + F  LG  +   V+    KG+G+V++ T   
Sbjct: 230 VAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIY--VKIPATKGYGYVQFKTRPS 289

Query: 229 AALAIQMGNTRSFLCGRQ-IKCSWGSKPTPPGTASNPLP 265
           A  A+Q    +  + G+Q ++ SW   P   G  +   P
Sbjct: 290 AEEAVQ--RMQGQVIGQQAVRISWSKNPGQDGWVTQADP 321

[Close]

BLAST of Carg27125 vs. Swiss-Prot
Match: sp|Q9LQI9|UBP1B_ARATH (Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 3.4e-90
Identity = 169/233 (72.53%), Postives = 196/233 (84.12%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQ+AI++++GKWLGS+QIRCNWA KGA   EDKQSSD+KSVVEL++G SEDGK++ N 
Sbjct: 191 QDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNG 250

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENN QYTTVYVGNLAPEV+Q+DLHRHFHSLGAGVIEEVR QRDKGFGFVRY+TH EA
Sbjct: 251 EAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEA 310

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNT S+L GRQ+KCSWGSKPTP GTASNPL         G SA+DLLAYERQLA
Sbjct: 311 ALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNPLXXXXXXXXXGFSASDLLAYERQLA 370

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           +SKM G++  + HPQG H  KQA M  GA  ++QA+YDGG+QN  +QQLMYYQ
Sbjct: 371 MSKMAGMNPMMHHPQGQHAFKQAAM--GATGSNQAIYDGGYQN--AQQLMYYQ 419

[Close]

BLAST of Carg27125 vs. Swiss-Prot
Match: sp|Q9LJH8|UBP1C_ARATH (Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-89
Identity = 173/234 (73.93%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQ+AIN+++GKWL S+QIRCNWA KGA   +DK SSD KSVVEL+ GSSEDGKE++N 
Sbjct: 196 QDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNE 255

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           E PENN Q+TTVYVGNLAPEVTQLDLHR+FH+LGAGVIEEVR QRDKGFGFVRYNTH EA
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEA 315

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNT+ +L  RQIKCSWG+KPTPPGTASNPL         GLSA DLL YERQLA
Sbjct: 316 ALAIQMGNTQPYLFNRQIKCSWGNKPTPPGTASNPLXXXXXXXXXGLSAADLLNYERQLA 375

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ 340
           LSKM  V+ ALMH QG HPL+QA  GI AA A+ A+YDGGFQN+ ++QQLMYYQ
Sbjct: 376 LSKMASVN-ALMHQQGQHPLRQA-HGINAAGATAAMYDGGFQNVAAAQQLMYYQ 427

[Close]

BLAST of Carg27125 vs. Swiss-Prot
Match: sp|Q9SYG4|UBP1A_ARATH (Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-86
Identity = 165/235 (70.21%), Postives = 192/235 (81.70%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQ+AIN+++GKW+ S+QIRCNWA KGA   EDK SSD KSVVEL+NGSSEDG+E  N 
Sbjct: 200 QDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNE 259

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           +APENN Q+TTVYVGNL+PEVTQLDLHR F++LGAGVIEEVR QRDKGFGFVRYNTH EA
Sbjct: 260 DAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEA 319

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGN + FL  RQI+CSWG+KPTP GTASNPLP PA AS P LSA DLLAYERQLA
Sbjct: 320 ALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLA 379

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ 340
           L+K        MHPQ  H L+QA +G+  A  + A+YDGG+QN+++  QQLMYYQ
Sbjct: 380 LAK--------MHPQAQHSLRQAGLGVNVAGGTAAMYDGGYQNVAAAHQQLMYYQ 426

[Close]

BLAST of Carg27125 vs. Swiss-Prot
Match: sp|Q9M427|UBP1_NICPL (Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.0e-78
Identity = 155/232 (66.81%), Postives = 182/232 (78.45%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKES-VN 167
           QEAQSAINDL+GKWLGS+QIRCNWAAKGAG    +Q+SD KSVVEL++G+S+DG+E  VN
Sbjct: 186 QEAQSAINDLNGKWLGSRQIRCNWAAKGAGA-VGEQNSDAKSVVELTSGTSDDGQEKVVN 245

Query: 168 NEAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAE 227
            +APENN QYTTVYVGNLAPEVT +DLHRHFH+LGAGVIE+VR QRDKGFGFVRY++HAE
Sbjct: 246 EDAPENNPQYTTVYVGNLAPEVTSVDLHRHFHALGAGVIEDVRIQRDKGFGFVRYSSHAE 305

Query: 228 AALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQL 287
           AA AIQ+GN R  L G+ +KCSWGSKPTPPG++SNPLP PA+   PGLSA DL AY+RQL
Sbjct: 306 AARAIQLGNAR-LLFGKPVKCSWGSKPTPPGSSSNPLPPPAIGQIPGLSAMDLAAYQRQL 365

Query: 288 ALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYY 339
           AL+KM G   A M PQG  +          A  Q +YDGG+  I+S Q   Y
Sbjct: 366 ALAKMAGAQ-AFMQPQGQRI---------GAPGQGIYDGGYGGIASTQPPMY 405

[Close]

BLAST of Carg27125 vs. Swiss-Prot
Match: sp|P31483|TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens OX=9606 GN=TIA1 PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-13
Identity = 51/144 (35.42%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 109 EAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNNE 168
           +A++AI  + G+WLG +QIR NWA +     +    S+TK +       S D  E VN  
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL-------SYD--EVVNQS 218

Query: 169 APENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEAA 228
           +P N     TVY G +   +T+  + + F   G   I E+R   DKG+ FVR+N+H  AA
Sbjct: 219 SPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAA 278

Query: 229 LAIQMGNTRSFLCGRQIKCSWGSK 253
            AI   N  + + G  +KC WG +
Sbjct: 279 HAIVSVNGTT-IEGHVVKCYWGKE 286

[Close]

BLAST of Carg27125 vs. TrEMBL
Match: tr|A0A1S3CDG5|A0A1S3CDG5_CUCME (oligouridylate-binding protein 1B-like OS=Cucumis melo OX=3656 GN=LOC103499180 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.5e-119
Identity = 217/233 (93.13%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQ+AINDL+GKWLGS+QIRCNWAAKGAGVNEDKQ SDTKSVVELSNGSSEDGKESVNN
Sbjct: 190 QEAQNAINDLTGKWLGSRQIRCNWAAKGAGVNEDKQGSDTKSVVELSNGSSEDGKESVNN 249

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           +APENNLQYTTVYVGNLAPEV+QLDLHRHFHSLGAGVIEEVR QRDKGFGFVRYNTHAEA
Sbjct: 250 DAPENNLQYTTVYVGNLAPEVSQLDLHRHFHSLGAGVIEEVRIQRDKGFGFVRYNTHAEA 309

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGT SNPLPLPA+ASTPGLSATDLLAYERQLA
Sbjct: 310 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTTSNPLPLPAVASTPGLSATDLLAYERQLA 369

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           ++KMGGVHAALMHPQG HP+KQAPMG+GAAAASQALYDGGFQNI++QQLMYYQ
Sbjct: 370 ITKMGGVHAALMHPQGPHPMKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ 422

[Close]

BLAST of Carg27125 vs. TrEMBL
Match: tr|A0A0A0LCP1|A0A0A0LCP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645950 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 5.8e-119
Identity = 216/233 (92.70%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQ+AINDL+GKWLGS+QIRCNWAAKGAGVNEDKQ SDTKSVVELSNGSSEDGKESVNN
Sbjct: 190 QEAQNAINDLTGKWLGSRQIRCNWAAKGAGVNEDKQGSDTKSVVELSNGSSEDGKESVNN 249

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           +APENNLQYTTVYVGNLAPEV+QLDLHRHFHSLGAGVIEEVR QRDKGFGFVRYNTHAEA
Sbjct: 250 DAPENNLQYTTVYVGNLAPEVSQLDLHRHFHSLGAGVIEEVRIQRDKGFGFVRYNTHAEA 309

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGT SNPLPLPA+ASTPGLSA DLLAYERQLA
Sbjct: 310 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTTSNPLPLPAVASTPGLSAADLLAYERQLA 369

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ 340
           ++KMGGVHAALMHPQG HP+KQAPMG+GAAAASQALYDGGFQNI++QQLMYYQ
Sbjct: 370 ITKMGGVHAALMHPQGPHPMKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ 422

[Close]

BLAST of Carg27125 vs. TrEMBL
Match: tr|A0A2C9UX41|A0A2C9UX41_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G016600 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.5e-106
Identity = 198/234 (84.62%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           QEAQSAINDL+GKWLGS+QIRCNWA KGAG N+DKQS D KSVVEL+NG+SEDGKE+ NN
Sbjct: 190 QEAQSAINDLTGKWLGSRQIRCNWATKGAGTNDDKQSLDAKSVVELTNGTSEDGKETTNN 249

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENN QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR QRDKGFGFVRY+THAEA
Sbjct: 250 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEA 309

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQ+GN +S LCG+QIKCSWGSKPTPPGT+SNPLP PA A  PGLSATDLL YERQLA
Sbjct: 310 ALAIQVGNNQSILCGKQIKCSWGSKPTPPGTSSNPLPPPAAAPLPGLSATDLLTYERQLA 369

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ 340
           +SKMGGVH ALMHPQG HPLKQA MG+GAA ASQA+YDGGFQN+ ++QQLMYYQ
Sbjct: 370 MSKMGGVH-ALMHPQGQHPLKQAAMGMGAAGASQAIYDGGFQNVAAAQQLMYYQ 422

[Close]

BLAST of Carg27125 vs. TrEMBL
Match: tr|A0A1U8PEJ8|A0A1U8PEJ8_GOSHI (oligouridylate-binding protein 1B-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107958370 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.3e-106
Identity = 198/234 (84.62%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQSAINDLSGKWLGS+QIRCNWA KGAG N+DKQSSD KSVVEL+NGSSEDGKE+ NN
Sbjct: 190 QDAQSAINDLSGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSSEDGKETTNN 249

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENN QYTTVYVGNLAPEVTQL+LHRHFH+LGAGVIEEVR QRDK FGFVRY+THA A
Sbjct: 250 EAPENNPQYTTVYVGNLAPEVTQLELHRHFHALGAGVIEEVRVQRDKSFGFVRYSTHAGA 309

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNT+SFLCG+QIKCSWGSKPTPPGT+SNPLP PA A  PGLSA DLLAYERQLA
Sbjct: 310 ALAIQMGNTQSFLCGKQIKCSWGSKPTPPGTSSNPLPPPAAAPLPGLSAIDLLAYERQLA 369

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ 340
           +SKMGGVH ALMHPQG HPLKQA MG+GAA ASQA+YDGGFQN+ ++QQL+YYQ
Sbjct: 370 MSKMGGVH-ALMHPQGQHPLKQAAMGVGAAGASQAIYDGGFQNVAAAQQLLYYQ 422

[Close]

BLAST of Carg27125 vs. TrEMBL
Match: tr|A0A0D2UM58|A0A0D2UM58_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G145300 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.3e-106
Identity = 198/234 (84.62%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 108 QEAQSAINDLSGKWLGSKQIRCNWAAKGAGVNEDKQSSDTKSVVELSNGSSEDGKESVNN 167
           Q+AQSAINDLSGKWLGS+QIRCNWA KGAG N+DKQSSD KSVVEL+NGSSEDGKE+ NN
Sbjct: 190 QDAQSAINDLSGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSSEDGKETTNN 249

Query: 168 EAPENNLQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRTQRDKGFGFVRYNTHAEA 227
           EAPENN QYTTVYVGNLAPEVTQL+LHRHFH+LGAGVIEEVR QRDK FGFVRY+THA A
Sbjct: 250 EAPENNPQYTTVYVGNLAPEVTQLELHRHFHALGAGVIEEVRVQRDKSFGFVRYSTHAGA 309

Query: 228 ALAIQMGNTRSFLCGRQIKCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLA 287
           ALAIQMGNT+SFLCG+QIKCSWGSKPTPPGT+SNPLP PA A  PGLSA DLLAYERQLA
Sbjct: 310 ALAIQMGNTQSFLCGKQIKCSWGSKPTPPGTSSNPLPPPAAAPLPGLSAIDLLAYERQLA 369

Query: 288 LSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ 340
           +SKMGGVH ALMHPQG HPLKQA MG+GAA ASQA+YDGGFQN+ ++QQL+YYQ
Sbjct: 370 MSKMGGVH-ALMHPQGQHPLKQAAMGVGAAGASQAIYDGGFQNVAAAQQLLYYQ 422

The following BLAST results are available for this feature:

BLAST of Carg27125 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955787.1	1.5e-126	100.00	oligouridylate-binding protein 1B-like isoform X1 [Cucurbita moschata]	[more]
XP_023527002.1	2.5e-126	99.57	oligouridylate-binding protein 1B-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022980633.1	1.3e-125	99.14	oligouridylate-binding protein 1B-like isoform X1 [Cucurbita maxima]	[more]
XP_022955788.1	1.1e-124	99.57	oligouridylate-binding protein 1B-like isoform X2 [Cucurbita moschata]	[more]
XP_023527003.1	1.8e-124	99.14	oligouridylate-binding protein 1B-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27125 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17370.1	1.9e-91	72.53	oligouridylate binding protein 1B	[more]
AT3G14100.1	9.4e-91	73.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G54080.2	7.5e-88	70.21	oligouridylate-binding protein 1A	[more]
AT4G13860.1	3.2e-06	41.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G19350.1	1.2e-05	26.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg27125 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQI9\|UBP1B_ARATH	3.4e-90	72.53	Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 ...	[more]
sp\|Q9LJH8\|UBP1C_ARATH	1.7e-89	73.93	Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 ...	[more]
sp\|Q9SYG4\|UBP1A_ARATH	1.3e-86	70.21	Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 ...	[more]
sp\|Q9M427\|UBP1_NICPL	3.0e-78	66.81	Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE...	[more]
sp\|P31483\|TIA1_HUMAN	2.6e-13	35.42	Nucleolysin TIA-1 isoform p40 OS=Homo sapiens OX=9606 GN=TIA1 PE=1 SV=3	[more]

BLAST of Carg27125 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDG5\|A0A1S3CDG5_CUCME	1.5e-119	93.13	oligouridylate-binding protein 1B-like OS=Cucumis melo OX=3656 GN=LOC103499180 P...	[more]
tr\|A0A0A0LCP1\|A0A0A0LCP1_CUCSA	5.8e-119	92.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645950 PE=4 SV=1	[more]
tr\|A0A2C9UX41\|A0A2C9UX41_MANES	2.5e-106	84.62	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G016600 PE=4 SV=...	[more]
tr\|A0A1U8PEJ8\|A0A1U8PEJ8_GOSHI	3.3e-106	84.62	oligouridylate-binding protein 1B-like isoform X1 OS=Gossypium hirsutum OX=3635 ...	[more]
tr\|A0A0D2UM58\|A0A0D2UM58_GOSRA	3.3e-106	84.62	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G145300 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27125-RA	Carg27125-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 178..248 e-value: 6.0E-15 score: 65.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 179..245 e-value: 2.6E-11 score: 43.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 177..252 score: 14.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 154..255 e-value: 3.1E-20 score: 74.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..170
None	No IPR available	PANTHER	PTHR44160	FAMILY NOT NAMED	coord: 107..339
None	No IPR available	PANTHER	PTHR44160:SF2	OLIGOURIDYLATE-BINDING PROTEIN 1A-RELATED	coord: 107..339
None	No IPR available	CDD	cd12354	RRM3_TIA1_like	coord: 177..252 e-value: 2.25687E-34 score: 121.188
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 164..256

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27125	Cla012537	Watermelon (97103) v1	carwmB0462
Carg27125	Csa3G645950	Cucumber (Chinese Long) v2	carcuB0497
Carg27125	MELO3C022679	Melon (DHL92) v3.5.1	carmeB0470
Carg27125	ClCG07G014480	Watermelon (Charleston Gray)	carwcgB0452
Carg27125	CSPI03G28440	Wild cucumber (PI 183967)	carcpiB0503
Carg27125	Cucsa.149440	Cucumber (Gy14) v1	carcgyB0536
Carg27125	CmaCh14G012010	Cucurbita maxima (Rimu)	carcmaB0647
Carg27125	CmoCh14G012250	Cucurbita moschata (Rifu)	carcmoB0629
Carg27125	Cp4.1LG03g14950	Cucurbita pepo (Zucchini)	carcpeB0653
Carg27125	CsGy3G026420	Cucumber (Gy14) v2	carcgybB0474
Carg27125	MELO3C022679.2	Melon (DHL92) v3.6.1	carmedB0473
Carg27125	CsaV3_3G030840	Cucumber (Chinese Long) v3	carcucB0500
Carg27125	Cla97C07G141330	Watermelon (97103) v2	carwmbB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27125	Cucurbita maxima (Rimu)	carcmaB0648
Carg27125	Cucurbita moschata (Rifu)	carcmoB0630
Carg27125	Cucurbita pepo (Zucchini)	carcpeB0652
Carg27125	Bottle gourd (USVL1VR-Ls)	carlsiB421