Carg26993 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26993
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_331 : 88808 .. 89689 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTCCTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCGAAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATGTAAGTTTTAAAAAATTATAATTTTTAGTTGAACGCAATTCTCCACAATGGTATAATATTGTCCATTTTGAGTAATAAGCTCTCATGCTTTGGACTTCTCCTCGTACAAATAGAGAAAGTATTATTTGATTATAAACTTATGATTATTTTCTAAATTAGTCGACGTGGGACTTTCATTTGAATATTTATGAAAGGGTGATTGACAATTGCAGAGCGGAGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGAGGAGTGGACATTGTTGATATGTGTTTTGGTTGTGCAGAGCTCCCATTTTTGGTGTCTGTGTTCCCTTGGGCTTCTCTATATTTCATTTCATTTTTACTATTATTTGCCCCCTTCTCTTGTTTGGGACATTTTTTTCTTTTAATTTACTAGCCCTTTG

mRNA sequence

ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTCCTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCGAAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATAGCGGAGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGAGGAGTGGACATTGTTGATATGTGTTTTGGTTGTGCAGAGCTCCCATTTTTGGTGTCTGTGTTCCCTTGGGCTTCTCTATATTTCATTTCATTTTTACTATTATTTGCCCCCTTCTCTTGTTTGGGACATTTTTTTCTTTTAATTTACTAGCCCTTTG

Coding sequence (CDS)

ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTCCTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCGAAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATAGCGGAGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGA

Protein sequence

MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

Homology

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022927818.1 (classical arabinogalactan protein 9 isoform X3 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 9.1e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 31
          MMDPQALLCFTFICIAFAGAGAQSPSTPPT
Sbjct: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 30

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022927816.1 (classical arabinogalactan protein 9 isoform X1 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 9.1e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 31
          MMDPQALLCFTFICIAFAGAGAQSPSTPPT
Sbjct: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 30

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022927817.1 (classical arabinogalactan protein 9 isoform X2 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 9.1e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 31
          MMDPQALLCFTFICIAFAGAGAQSPSTPPT
Sbjct: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 30

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022988984.1 (classical arabinogalactan protein 9 isoform X1 [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 31
          MMDPQALLCFTFI I FAGAGAQSPSTPPT
Sbjct: 1  MMDPQALLCFTFIYIVFAGAGAQSPSTPPT 30

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022988985.1 (classical arabinogalactan protein 9 isoform X2 [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MMDPQALLCFTFICIAFAGAGAQSPSTPPT 31
          MMDPQALLCFTFI I FAGAGAQSPSTPPT
Sbjct: 1  MMDPQALLCFTFIYIVFAGAGAQSPSTPPT 30

The following BLAST results are available for this feature:

BLAST of Carg26993 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927818.1	9.1e-08	100.00	classical arabinogalactan protein 9 isoform X3 [Cucurbita moschata]	[more]
XP_022927816.1	9.1e-08	100.00	classical arabinogalactan protein 9 isoform X1 [Cucurbita moschata]	[more]
XP_022927817.1	9.1e-08	100.00	classical arabinogalactan protein 9 isoform X2 [Cucurbita moschata]	[more]
XP_022988984.1	5.0e-06	93.33	classical arabinogalactan protein 9 isoform X1 [Cucurbita maxima]	[more]
XP_022988985.1	5.0e-06	93.33	classical arabinogalactan protein 9 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg26993 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26993 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26993 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26993-RA	Carg26993-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 62..78 score: 44.71 coord: 41..62 score: 38.18 coord: 26..38 score: 55.38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..103
None	No IPR available	PANTHER	PTHR37209:SF1	SUBFAMILY NOT NAMED	coord: 2..37
None	No IPR available	PANTHER	PTHR37209	FAMILY NOT NAMED	coord: 2..37
None	No IPR available	PANTHER	PTHR37209:SF1	SUBFAMILY NOT NAMED	coord: 33..160
None	No IPR available	PANTHER	PTHR37209	FAMILY NOT NAMED	coord: 33..160

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26993	Cla016078	Watermelon (97103) v1	carwmB0179
Carg26993	CmoCh11G014030	Cucurbita moschata (Rifu)	carcmoB0267

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26993	Carg16348	Silver-seed gourd	carcarB228

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26993	Cucumber (Gy14) v2	carcgybB0202
Carg26993	Cucumber (Gy14) v1	carcgyB0228
Carg26993	Cucurbita maxima (Rimu)	carcmaB0260
Carg26993	Cucurbita maxima (Rimu)	carcmaB0261
Carg26993	Cucurbita moschata (Rifu)	carcmoB0268
Carg26993	Cucurbita pepo (Zucchini)	carcpeB0271
Carg26993	Cucurbita pepo (Zucchini)	carcpeB0272
Carg26993	Wild cucumber (PI 183967)	carcpiB0217
Carg26993	Cucumber (Chinese Long) v2	carcuB0210
Carg26993	Cucumber (Chinese Long) v3	carcucB0216
Carg26993	Bottle gourd (USVL1VR-Ls)	carlsiB167
Carg26993	Melon (DHL92) v3.5.1	carmeB0192
Carg26993	Melon (DHL92) v3.6.1	carmedB0196
Carg26993	Watermelon (Charleston Gray)	carwcgB0181
Carg26993	Watermelon (97103) v2	carwmbB0193