Carg26978 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26978
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	lamin-like protein
Location	Cucurbita_argyrosperma_scaffold_370 : 20862 .. 21968 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGAAATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATGGCTTGGGCAACACTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCTCACCGTTTCTATCTCGGTGATTGGCTTTGTAAGTTTCTTTATCTCTTTCGTATTTTTTCGTTCTTTCTTGTTTTGAAAATCGGGTCGAGTCGAGTCGAATCCGGCAAATTTGTGAGCTTTTTCGAACAGTTTCAATTAGTTTTGGTTCTTCAGCTTCGTACTGTCAATTTAGTCCCTAAATTTTTCATATTTATAATAATTTAAGGGTCGTGATTCTTGTATATCATTATTTTTTTCATGAATATCCAATGTTTTTTTCTTTTATTTTTTTTAATTTTAAGAAAATATTGATATTATTCACAAATAAAAAAAAATATATAGCCCGAAATTAAAGATTAAAAATGGATGAATTTATTTTTTTAAATTATTATTATTATTAGGAAGTGAATTTAGGAAATAAAGTTTTGTTAGTGACCAATGATGCTAAATTAAAAAATATATATTTTGTTTTTTTCTTTTTATAAATATTTTTGAGTTTGATTAATTTGGTAGAAAAGTATTAAGTGAAATTTAAAAAATTTAAGATATTTTTTAAATATTTTAAAGTTTTAAGGGTGTTTTTTAAAATTTGTAGGACGAAATAATTAATTGTTAAAATCGTATATTAATATTTTGTTTGAAAAGATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTCATAAAGAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGCTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTCAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCTGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCCCTTATGCTTTTTGTTGCTCTTTTCTTAGTGATTAAGATTGAGTGA

mRNA sequence

GGAAGAAATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATGGCTTGGGCAACACTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCTCACCGTTTCTATCTCGGTGATTGGCTTTATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTCATAAAGAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGCTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTCAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCTGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCCCTTATGCTTTTTGTTGCTCTTTTCTTAGTGATTAAGATTGAGTGA

Coding sequence (CDS)

ATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATGGCTTGGGCAACACTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCTCACCGTTTCTATCTCGGTGATTGGCTTTATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTCATAAAGAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGCTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTCAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCTGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCCCTTATGCTTTTTGTTGCTCTTTTCTTAGTGATTAAGATTGAGTGA

Protein sequence

MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE

Homology

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BLAST of Carg26978 vs. NCBI nr
Match: XP_022926318.1 (lamin-like protein [Cucurbita moschata])

HSP 1 Score: 338.2 bits (866), Expect = 1.6e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 168
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 167

[Close]

BLAST of Carg26978 vs. NCBI nr
Match: XP_022970103.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 1.1e-85
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVAMAWAT AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATDAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVN+TSYE C EKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV
Sbjct: 61  DKRYYNVLEVNETSYEGCTEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 168
           LVCPTAVAPAAPPSATPIS ASLSNPTCWIMNAL+LFVALFLVIKIE
Sbjct: 121 LVCPTAVAPAAPPSATPISRASLSNPTCWIMNALLLFVALFLVIKIE 167

[Close]

BLAST of Carg26978 vs. NCBI nr
Match: XP_023530289.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 5.3e-85
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVA+AWA +AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVNKTSYESCNEKEFI NITRGGRDVFQLTELRPYFFIAGGGYCF+GMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVI 165
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNAL+LFVALFLVI
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 164

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BLAST of Carg26978 vs. NCBI nr
Match: XP_004136681.1 (PREDICTED: lamin-like protein [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 111/168 (66.07%), Postives = 127/168 (75.60%), Query Frame = 0


Query: 6   VRVIMVIVAMAW-----ATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 65
           +R  MV+V   W      T+  GE+LHKVGNS+GW PN NYT WSSSH FYLGDWLYFVF
Sbjct: 15  IRKKMVMVCTGWLLLIMVTIGKGEELHKVGNSQGWTPNQNYTHWSSSHHFYLGDWLYFVF 74

Query: 66  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 125
           DKRYYNVLEVNK S+E CNEK+FIKNITRGGRDVFQLTEL PYFFI GGGYCFQGMKLAV
Sbjct: 75  DKRYYNVLEVNKRSFEDCNEKDFIKNITRGGRDVFQLTELHPYFFIGGGGYCFQGMKLAV 134

Query: 126 LVCPT-AVAPAAPPSATPISGASL--SNPT--CWIMNALMLFVALFLV 164
            +      APA  P+ +  SG +   +NPT  C I+NAL+LFVA+F +
Sbjct: 135 YMSTVDHSAPAPSPAGSNKSGGAFLSNNPTLCCSILNALLLFVAIFFL 182

[Close]

BLAST of Carg26978 vs. NCBI nr
Match: KGN59524.1 (hypothetical protein Csa_3G824210 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 111/168 (66.07%), Postives = 127/168 (75.60%), Query Frame = 0


Query: 6   VRVIMVIVAMAW-----ATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 65
           +R  MV+V   W      T+  GE+LHKVGNS+GW PN NYT WSSSH FYLGDWLYFVF
Sbjct: 50  IRKKMVMVCTGWLLLIMVTIGKGEELHKVGNSQGWTPNQNYTHWSSSHHFYLGDWLYFVF 109

Query: 66  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 125
           DKRYYNVLEVNK S+E CNEK+FIKNITRGGRDVFQLTEL PYFFI GGGYCFQGMKLAV
Sbjct: 110 DKRYYNVLEVNKRSFEDCNEKDFIKNITRGGRDVFQLTELHPYFFIGGGGYCFQGMKLAV 169

Query: 126 LVCPT-AVAPAAPPSATPISGASL--SNPT--CWIMNALMLFVALFLV 164
            +      APA  P+ +  SG +   +NPT  C I+NAL+LFVA+F +
Sbjct: 170 YMSTVDHSAPAPSPAGSNKSGGAFLSNNPTLCCSILNALLLFVAIFFL 217

[Close]

BLAST of Carg26978 vs. TAIR10
Match: AT2G27035.1 (early nodulin-like protein 20)

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-31
Identity = 63/140 (45.00%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 8   VIMVIVAMAWATLAMGEKLHKVGNSK-GWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYN 67
           ++ V V +    + +   LH+VG  +  WN ++N++ W++  RFY GDWLYF F++  +N
Sbjct: 9   LVYVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHN 68

Query: 68  VLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTA 127
           +L+VNK+SYE C + ++I NITRGGRDVFQL E +PY+FI G GYC +GMKLA+ V P  
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLP-- 128

Query: 128 VAPAAPPSATPISGASLSNP 147
                PP + P +  S + P
Sbjct: 129 ----QPPPSAPTNFTSTTTP 142

[Close]

BLAST of Carg26978 vs. TAIR10
Match: AT5G15350.1 (early nodulin-like protein 17)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMG--EKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYF 60
           M    V +  V++A   A    G   K + VG +K WNPN+NYT+W+    FYLGDWLYF
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYF 60

Query: 61  VFDKRYYNVLEVNKTSYESCNEKEFIKNITRG-GRDVFQLTELRPYFFIAGGGYCFQGMK 120
           VFD+  +N+LEVNKT YE C     I+N TRG GRD+  L + + Y+ + G G C+ GMK
Sbjct: 61  VFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMK 120

Query: 121 LAVLVCPTAVAPAAPPSATPI 139
           L+V V    + P  PP + P+
Sbjct: 121 LSVKV--EKLPP--PPKSAPV 137

[Close]

BLAST of Carg26978 vs. TAIR10
Match: AT4G12880.1 (early nodulin-like protein 19)

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-26
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 5   RVRVIMVIVAMAWATLA----MGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 64
           R  V++  V +A+   A    +  K + VG+ K WNPN+NYTLW+    FY+GDWLYFVF
Sbjct: 3   RSMVLISAVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVF 62

Query: 65  DKRYYNVLEVNKTSYESCNEKEFIKNITRG-GRDVFQLTELRPYFFIAGGGYCFQGMKLA 123
            +  +N+LEVNK  YE C     I+N TRG GRD+  L E R Y+ + G G C QGMKL 
Sbjct: 63  YRDQHNILEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLD 122

[Close]

BLAST of Carg26978 vs. TAIR10
Match: AT2G31050.1 (Cupredoxin superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-14
Identity = 46/140 (32.86%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 11  VIVAMAWATLAMGEKLHKVGNSKGWN-PNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLE 70
           +++ +A   +++G  +HKVG+S GW   ++NY  W+S+  F +GD L F ++K +++V E
Sbjct: 13  LLILVALFGISVGGTVHKVGDSDGWTIMSVNYETWASTITFQVGDSLVFKYNKDFHDVTE 72

Query: 71  VNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAG-GGYCFQGMKLAVLVCPTAVA 130
           V    YE C   + +     G  D+  LT+     FI G  G+C  G KL + V P ++ 
Sbjct: 73  VTHNDYEMCEPSKPLARYETGS-DIVILTKPGLQHFICGFPGHCDMGQKLQIHVLPASLG 132

Query: 131 PAAPPSATPI-SGASLSNPT 148
           P A P   P+   +S S+P+
Sbjct: 133 PVAAPVPGPVRPPSSFSSPS 151

[Close]

BLAST of Carg26978 vs. TAIR10
Match: AT2G26720.1 (Cupredoxin superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.6e-13
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 20  LAMGEKLHKVGNSKGWNP-NLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESC 79
           +A+G  +HKVGN+KGW     +Y  W+SS  F +GD L F ++K Y++V EV    +E C
Sbjct: 22  VAVGGTVHKVGNTKGWTMIGGDYEAWASSRVFQVGDTLVFAYNKDYHDVTEVTHNDFEMC 81

Query: 80  NEKEFIKNITRGGRDVFQLTELRPYFFIAG-GGYCFQGMKLAVLVCPTAVAPAA 132
              + ++   + G D   LT+     FI G  G+C +G KL + V P ++   A
Sbjct: 82  ESSKPLRRY-KTGSDSISLTKPGLQHFICGVPGHCKKGQKLQIHVLPASLGHVA 134

[Close]

BLAST of Carg26978 vs. Swiss-Prot
Match: sp|Q39131|LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMG--EKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYF 60
           M    V +  V++A   A    G   K + VG +K WNPN+NYT+W+    FYLGDWLYF
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYF 60

Query: 61  VFDKRYYNVLEVNKTSYESCNEKEFIKNITRG-GRDVFQLTELRPYFFIAGGGYCFQGMK 120
           VFD+  +N+LEVNKT YE C     I+N TRG GRD+  L + + Y+ + G G C+ GMK
Sbjct: 61  VFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMK 120

Query: 121 LAVLVCPTAVAPAAPPSATPI 139
           L+V V    + P  PP + P+
Sbjct: 121 LSVKV--EKLPP--PPKSAPV 137

[Close]

BLAST of Carg26978 vs. Swiss-Prot
Match: sp|Q9T076|ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 29  VGNSKGW--NPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFIKN 88
           VG S  W  NP  NY  WS  +RF + D LYF + K   +VLEVNK  Y++CN K  IK 
Sbjct: 33  VGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKR 92

Query: 89  ITRGGRDVFQLTELRPYFFIAGG-GYCFQGMKLAVLVCPTAVAPAA 132
           +  G  ++  L    P++FI+G    C +G KL V+V    +   A
Sbjct: 93  VDDGDSEI-SLDRYGPFYFISGNEDNCKKGQKLNVVVISARIPSTA 137

[Close]

BLAST of Carg26978 vs. Swiss-Prot
Match: sp|O82081|UCC1_ARATH (Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-11
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 10  MVIVAMAWATLAMGEKL---HKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYN 69
           M+I+    AT  +G  +   H +G   GW    +   W++   F +GD L F +   +++
Sbjct: 6   MLIIISVLATTLIGLTVATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHD 65

Query: 70  VLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTA 129
           V+EV K  ++SC   + +     G   V   T  + YF     G+C QGMKL V V PTA
Sbjct: 66  VVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNVVPTA 125

Query: 130 -VAPAAP-PSATP 138
            VAP AP P+  P
Sbjct: 126 TVAPTAPLPNTVP 138

[Close]

BLAST of Carg26978 vs. Swiss-Prot
Match: sp|P80728|MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 26  LHKVGNSKGWNPNL--NYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEF 85
           +HKVG+S GW   +  +Y  W+SS++F++GD L F ++ +++NVL+V++  ++SCN    
Sbjct: 3   VHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSP 62

Query: 86  IKNITRGGRDVFQLTELRPYFFIAG-GGYCFQGMKLAVLVCP 125
             + T  G D   L     ++F+ G  G+C  G K+ + V P
Sbjct: 63  AASYT-SGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDP 103

[Close]

BLAST of Carg26978 vs. Swiss-Prot
Match: sp|Q9SK27|ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09
Identity = 47/155 (30.32%), Postives = 81/155 (52.26%), Query Frame = 0


Query: 19  TLAMGEKLHKVGNSKGW----NPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTS 78
           +LA   ++   G S  W    + + ++T W+   RF +GD++ F ++    +VLEV K +
Sbjct: 24  SLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEA 83

Query: 79  YESCNEKEFIKNITRGGRDVFQLTELRPYFFIAG-GGYCFQGMKLAVLVCP---TAVAPA 138
           Y SCN    + N T G   V +L    P++FI+G  G+C +G KL+++V     + ++PA
Sbjct: 84  YNSCNTTNPLANYTDGETKV-KLDRSGPFYFISGANGHCEKGQKLSLVVISPRHSVISPA 143

Query: 139 APP---------SATPISGASLSNPTCWIMNALML 157
             P         +  PISG S+    C+++  L+L
Sbjct: 144 PSPVEFEDGPALAPAPISG-SVRLGGCYVVLGLVL 176

[Close]

BLAST of Carg26978 vs. TrEMBL
Match: tr|A0A0A0LF66|A0A0A0LF66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824210 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 8.8e-52
Identity = 111/168 (66.07%), Postives = 127/168 (75.60%), Query Frame = 0


Query: 6   VRVIMVIVAMAW-----ATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 65
           +R  MV+V   W      T+  GE+LHKVGNS+GW PN NYT WSSSH FYLGDWLYFVF
Sbjct: 50  IRKKMVMVCTGWLLLIMVTIGKGEELHKVGNSQGWTPNQNYTHWSSSHHFYLGDWLYFVF 109

Query: 66  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 125
           DKRYYNVLEVNK S+E CNEK+FIKNITRGGRDVFQLTEL PYFFI GGGYCFQGMKLAV
Sbjct: 110 DKRYYNVLEVNKRSFEDCNEKDFIKNITRGGRDVFQLTELHPYFFIGGGGYCFQGMKLAV 169

Query: 126 LVCPT-AVAPAAPPSATPISGASL--SNPT--CWIMNALMLFVALFLV 164
            +      APA  P+ +  SG +   +NPT  C I+NAL+LFVA+F +
Sbjct: 170 YMSTVDHSAPAPSPAGSNKSGGAFLSNNPTLCCSILNALLLFVAIFFL 217

[Close]

BLAST of Carg26978 vs. TrEMBL
Match: tr|A0A1S3B8J9|A0A1S3B8J9_CUCME (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486965 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.1e-51
Identity = 111/172 (64.53%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 5   RVRVI-MVIVAMAWATLAM------GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLY 64
           R+R I  +++   W  L +      GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLY
Sbjct: 11  RIRFIRKMVMVCGWLLLLVVRIGIKGEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLY 70

Query: 65  FVFDKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMK 124
           FVFDKRYYNVLEVNK SYE CN+K+FIKNITRGGRDVFQL+EL PYFFI GGGYCFQGMK
Sbjct: 71  FVFDKRYYNVLEVNKRSYEDCNDKDFIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMK 130

Query: 125 LAVLVCPTAVAPAAPPSATPISGASLS----NPT--CWIMNALMLFVALFLV 164
           LAV V     APA  P+A+  SG   S    NPT  C ++NAL+LFVA+FL+
Sbjct: 131 LAVYVSAVDSAPAPSPAASNKSGGGASFLSNNPTFCCSVLNALLLFVAIFLL 182

[Close]

BLAST of Carg26978 vs. TrEMBL
Match: tr|W9R4J9|W9R4J9_9ROSA (Lamin-like protein OS=Morus notabilis OX=981085 GN=L484_020957 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 72/115 (62.61%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 8   VIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNV 67
           V+M +V +  + +A    LH+VG S GWN N+NYTLWS+S   Y+GDWLYF FDKRYYNV
Sbjct: 20  VMMSLVGLKTSVMAK-TTLHRVGGSLGWNQNINYTLWSASQHIYVGDWLYFHFDKRYYNV 79

Query: 68  LEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLV 123
           LEVNKTSYE+C+++ FIKNIT+GGRDV++LTE RPY+F++GGGYC+ GM++A+ V
Sbjct: 80  LEVNKTSYENCDDQSFIKNITQGGRDVYELTEARPYYFLSGGGYCYHGMRVAIFV 133

[Close]

BLAST of Carg26978 vs. TrEMBL
Match: tr|M5X7N7|M5X7N7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020122mg PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 77/140 (55.00%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 8   VIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNV 67
           V++  + + W   +    LHKVG ++GWN N+NYT WS++  FY+G+WL F FDKRYYNV
Sbjct: 19  VVITAITVGWLMTSANGVLHKVGGAQGWNQNVNYTEWSANENFYVGEWLLFNFDKRYYNV 78

Query: 68  LEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVC---- 127
           LEVNK+S+ESCN++ F+KNITRGGRDV+QLTE RPY+F++GGGYCF GM+LA++      
Sbjct: 79  LEVNKSSFESCNDQGFMKNITRGGRDVYQLTEDRPYYFLSGGGYCFHGMRLALVALQDQQ 138

Query: 128 PTAVAPAAPPSATPISGASL 144
               APA  PS    S  SL
Sbjct: 139 QLPPAPALAPSTNAASPNSL 158

[Close]

BLAST of Carg26978 vs. TrEMBL
Match: tr|A0A251Q905|A0A251Q905_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G261800 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 81/165 (49.09%), Postives = 115/165 (69.70%), Query Frame = 0


Query: 8   VIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNV 67
           V++  + + W   +    LHKVG ++GWN N+NYT WS++  FY+G+WL F FDKRYYNV
Sbjct: 21  VVITAITVGWLMTSANGVLHKVGGAQGWNQNVNYTEWSANENFYVGEWLLFNFDKRYYNV 80

Query: 68  LEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVC---- 127
           LEVNK+S+ESCN++ F+KNITRGGRDV+QLTE RPY+F++GGGYCF GM+LA++      
Sbjct: 81  LEVNKSSFESCNDQGFMKNITRGGRDVYQLTEDRPYYFLSGGGYCFHGMRLALVALQDQQ 140

Query: 128 PTAVAPAAPPSATPISGASLSNPTCWI-MNALMLFVALFLVIKIE 168
               APA  PS    S  SL +   +I ++A ++ + L L+  ++
Sbjct: 141 QLPPAPALAPSTNAASPNSLPSAKMFIFLSATVISLGLHLMWDVD 185

The following BLAST results are available for this feature:

BLAST of Carg26978 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926318.1	1.6e-89	100.00	lamin-like protein [Cucurbita moschata]	[more]
XP_022970103.1	1.1e-85	96.41	lamin-like protein [Cucurbita maxima]	[more]
XP_023530289.1	5.3e-85	96.34	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_004136681.1	1.3e-51	66.07	PREDICTED: lamin-like protein [Cucumis sativus]	[more]
KGN59524.1	1.3e-51	66.07	hypothetical protein Csa_3G824210 [Cucumis sativus]	[more]

BLAST of Carg26978 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27035.1	7.0e-31	45.00	early nodulin-like protein 20	[more]
AT5G15350.1	1.1e-26	44.68	early nodulin-like protein 17	[more]
AT4G12880.1	4.0e-26	48.78	early nodulin-like protein 19	[more]
AT2G31050.1	6.0e-14	32.86	Cupredoxin superfamily protein	[more]
AT2G26720.1	8.6e-13	35.96	Cupredoxin superfamily protein	[more]

BLAST of Carg26978 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39131\|LAML_ARATH	1.9e-25	44.68	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
sp\|Q9T076\|ENL2_ARATH	2.0e-11	39.62	Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S...	[more]
sp\|O82081\|UCC1_ARATH	3.5e-11	33.83	Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1	[more]
sp\|P80728\|MAVI_CUCPE	1.3e-10	34.31	Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1	[more]
sp\|Q9SK27\|ENL1_ARATH	7.2e-09	30.32	Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 S...	[more]

BLAST of Carg26978 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LF66\|A0A0A0LF66_CUCSA	8.8e-52	66.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824210 PE=4 SV=1	[more]
tr\|A0A1S3B8J9\|A0A1S3B8J9_CUCME	1.1e-51	64.53	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486965 PE=4 SV=1	[more]
tr\|W9R4J9\|W9R4J9_9ROSA	2.1e-37	62.61	Lamin-like protein OS=Morus notabilis OX=981085 GN=L484_020957 PE=4 SV=1	[more]
tr\|M5X7N7\|M5X7N7_PRUPE	4.7e-37	55.00	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020122m...	[more]
tr\|A0A251Q905\|A0A251Q905_PRUPE	4.7e-37	49.09	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G261800 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR039391	Phytocyanin
IPR003245	Phytocyanin_dom
IPR008972	Cupredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26978-RA	Carg26978-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 24..128 e-value: 1.9E-26 score: 94.2
IPR008972	Cupredoxin	SUPERFAMILY	SSF49503	Cupredoxins	coord: 25..123
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 35..116 e-value: 8.7E-19 score: 67.2
IPR003245	Phytocyanin domain	PRODOM	PD003122		coord: 58..122 e-value: 4.0E-18 score: 222.0
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 25..124 score: 29.276
IPR039391	Phytocyanin	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 9..163
None	No IPR available	PANTHER	PTHR33021:SF17	SUBFAMILY NOT NAMED	coord: 9..163

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26978	Cucurbita maxima (Rimu)	carcmaB1143
Carg26978	Cucurbita moschata (Rifu)	carcmoB1113
Carg26978	Cucurbita pepo (Zucchini)	carcpeB1154