Carg26977 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26977
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	lamin-like protein
Location	Cucurbita_argyrosperma_scaffold_370 : 17487 .. 18958 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAATACAGAGCTATGGAGGTTCTAAGAAGGGGCAGCGGCGGTGGGCTGTTGGCGGCGGTGGTGCTGCTGCTGCTGGCGGCGGCGGTGTCGGAAGTTTCAGCTAAACGGTGGACTGTTGGTGACAACATGGGGTGGACGTCCAATGTGAACTACACTGTCTGGGCTGAAGGGAAGCACTTCTACTATGACGACTGGCTCTGTAAGCACTTTTATCTTTAGATCTGTTAATGGTGTTTGGATTTGTAGCTGATAATTTGGATTTTGGTTAGTTTTGAGGAGAGATTTTGTGGGTTTTTGTCGGATTTTGATGTTCTTGATTCTGTTTGGTTGCTGAGAAAATTGGTGTAAGAAGTAGGAAAATGAAATTGGTTCTTGATGTTCTTGGTTCTGCCTTTTGAATTTCTGTGTTTGATTGTTCTTGTCCCTTAGCTTGAGATATGGACTAGGTTTTAGAATCTGGATTTGATGCAAATCAACACGGGTTCTTTCAACATGTTTTGTTCTCGGTTATCGAATCATTTAGAGAAATCTGCTAAGATTTGGTTTGTTACTAGCAAATGAGCTGAAAAGAAAGTTCCAACTCGCATAATCTCTCGGTCGCTCTTGTTTTGATGTAATGTCGGTTCATCCATGTATCCCTTTGCACGTGCACGTATGTACATTACATTGTAACGATCTATCAAGTATTATATGAGAAAAACTCTCGAAGATTGAACGTATTGGGTCGAAATATGGTTAGTTACTCGAACTAGTTCGACGAGGATGTCGGGATTATAGCTAATTTGGTCTTTGTTGTTAGTTTTTGTGTACGACAGGAACCAAATGGATGTGTTGGAGGTGAACAAGACAAACTACGAGGCTTGCAATTCTGAGAATCCACTAAAAAACTTCACCACAGGAGCTGGAAGAGATGTTGTTCATTTGAATGTAACAAGACCTTATTACTTCATAAGTGGCAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCAATGTCGAGCACCTACCGCCCCGCCCTCGAGCTCACCCTTGAATGAGAAGAGCAGTGCTCCAAGATCAACCCACATGGGCCACATCCCGTTCGTTTTAACCGCTGTTTTTGCAGCTGCTCGGGCCTTGATATGGTAAACCACCGGTGTTGTTGATTGATATTGAAACAGAGGAGATCTTGCTTCACCAATTTGTGCAAGGAAGATGTAGTTAGTTATTGGATCCAGTTTCTTTGTGTTATGTTGTTGATTTAAAAATTTGTTGTTGTTGTTGTTGATGATGATGATGTTCTTGGTGTTCTTGATGGGTGGTGGGTATTAAACTCATAGGGGTTGAGATTTGATAATACTCATAATTTATTTTGGCCATTGAAAATGGGTTTGGTTGCAGCAAGGGGCAAGCCACCACCACCAACCATGTGAGTATAGATTCTTCTGTCTCTTTTATATTCATTGAATGAATAGATTGCTAATTTGG

mRNA sequence

TAAAAATACAGAGCTATGGAGGTTCTAAGAAGGGGCAGCGGCGGTGGGCTGTTGGCGGCGGTGGTGCTGCTGCTGCTGGCGGCGGCGGTGTCGGAAGTTTCAGCTAAACGGTGGACTGTTGGTGACAACATGGGGTGGACGTCCAATGTGAACTACACTGTCTGGGCTGAAGGGAAGCACTTCTACTATGACGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGGATGTGTTGGAGGTGAACAAGACAAACTACGAGGCTTGCAATTCTGAGAATCCACTAAAAAACTTCACCACAGGAGCTGGAAGAGATGTTGTTCATTTGAATGTAACAAGACCTTATTACTTCATAAGTGGCAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCAATGTCGAGCACCTACCGCCCCGCCCTCGAGCTCACCCTTGAATGAGAAGAGCAGTGCTCCAAGATCAACCCACATGGGCCACATCCCGTTCGTTTTAACCGCTGTTTTTGCAGCTGCTCGGGCCTTGATATGGTAAACCACCGGTGTTGTTGATTGATATTGAAACAGAGGAGATCTTGCTTCACCAATTTGTGCAAGGAAGATGTAGTTAGTTATTGGATCCAGTTTCTTTGTGTTATGTTGTTGATTTAAAAATTTGTTGTTGTTGTTGTTGATGATGATGATGTTCTTGGTGTTCTTGATGGGTGGTGGGTATTAAACTCATAGGGGTTGAGATTTGATAATACTCATAATTTATTTTGGCCATTGAAAATGGGTTTGGTTGCAGCAAGGGGCAAGCCACCACCACCAACCATGTGAGTATAGATTCTTCTGTCTCTTTTATATTCATTGAATGAATAGATTGCTAATTTGG

Coding sequence (CDS)

ATGGAGGTTCTAAGAAGGGGCAGCGGCGGTGGGCTGTTGGCGGCGGTGGTGCTGCTGCTGCTGGCGGCGGCGGTGTCGGAAGTTTCAGCTAAACGGTGGACTGTTGGTGACAACATGGGGTGGACGTCCAATGTGAACTACACTGTCTGGGCTGAAGGGAAGCACTTCTACTATGACGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGGATGTGTTGGAGGTGAACAAGACAAACTACGAGGCTTGCAATTCTGAGAATCCACTAAAAAACTTCACCACAGGAGCTGGAAGAGATGTTGTTCATTTGAATGTAACAAGACCTTATTACTTCATAAGTGGCAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCAATGTCGAGCACCTACCGCCCCGCCCTCGAGCTCACCCTTGA

Protein sequence

MEVLRRGSGGGLLAAVVLLLLAAAVSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP

Homology

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BLAST of Carg26977 vs. NCBI nr
Match: XP_022933881.1 (lamin-like protein [Cucurbita moschata])

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MEVLRXXXXXXXXXXXXXXXXXXXXSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDD 60
           MEVLRXXXXXXXXXXXXXXXXXXXXSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDD
Sbjct: 1   MEVLRXXXXXXXXXXXXXXXXXXXXSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDD 60

Query: 61  WLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCY 120
           WLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCY
Sbjct: 61  WLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCY 120

Query: 121 GGMKLAINVEHLPPRPRAHP 141
           GGMKLAINVEHLPP P + P
Sbjct: 121 GGMKLAINVEHLPPPPSSSP 140

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BLAST of Carg26977 vs. NCBI nr
Match: XP_023530287.1 (lamin-like protein [Cucurbita pepo subsp. pepo] >XP_023530288.1 lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MEVLRXXXXXXXXXXXXXXXXXXXXSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDD 60
           MEVLRXXXXXXXXXXXXXXXXXXXXSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDD
Sbjct: 1   MEVLRXXXXXXXXXXXXXXXXXXXXSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDD 60

Query: 61  WLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCY 120
           WLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCY
Sbjct: 61  WLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCY 120

Query: 121 GGMKLAINVEHLPPRPRAHP 141
           GGMKLAINVEHLPP P + P
Sbjct: 121 GGMKLAINVEHLPPPPSSSP 140

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BLAST of Carg26977 vs. NCBI nr
Match: XP_022970072.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 245.0 bits (624), Expect = 1.5e-61
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 26  SEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACN 85
           SEVSAKRWTVGDNMGWT+NVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACN
Sbjct: 25  SEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACN 84

Query: 86  SENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           SENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPP P + P
Sbjct: 85  SENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPPPSSSP 139

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BLAST of Carg26977 vs. NCBI nr
Match: XP_022935116.1 (lamin-like protein [Cucurbita moschata])

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EVSA RWTVG  MGWT+NVNYT+WAEGKHFYYDDWLFFVYDRNQM+VLEVNKT YE CNS
Sbjct: 57  EVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNVLEVNKTEYENCNS 116

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           + PL NFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAI+V HLPP P A P
Sbjct: 117 DQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLPPPPSASP 170

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BLAST of Carg26977 vs. NCBI nr
Match: XP_023528207.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 5.3e-54
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EVSA RWTVG  MGWT+NVNYT+WAEGKHFYYDDWLFFVYDRNQM+VLEVNKT YE CNS
Sbjct: 29  EVSATRWTVGGKMGWTTNVNYTMWAEGKHFYYDDWLFFVYDRNQMNVLEVNKTEYENCNS 88

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           + PL NFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAI+V HLPP P A P
Sbjct: 89  DQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLPPPPSASP 142

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BLAST of Carg26977 vs. TAIR10
Match: AT5G15350.1 (early nodulin-like protein 17)

HSP 1 Score: 166.8 bits (421), Expect = 9.7e-42
Identity = 68/113 (60.18%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 28  VSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSE 87
           V+AK++TVG+N  W  N+NYT+WA+GKHFY  DWL+FV+DRNQ ++LEVNKT+YE C ++
Sbjct: 24  VTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIAD 83

Query: 88  NPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           +P++N+T GAGRD+V LN T+ YY + GKG CYGGMKL++ VE LPP P++ P
Sbjct: 84  HPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAP 136

[Close]

BLAST of Carg26977 vs. TAIR10
Match: AT4G12880.1 (early nodulin-like protein 19)

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-32
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EV+AK++ VGD   W  N+NYT+WA+GKHFY  DWL+FV+ R+Q ++LEVNK +YE C S
Sbjct: 23  EVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQHNILEVNKADYEKCIS 82

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVE 131
             P++N+T GAGRD+V L  TR YY + G+G C  GMKL + VE
Sbjct: 83  NRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVE 126

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BLAST of Carg26977 vs. TAIR10
Match: AT3G01070.1 (early nodulin-like protein 16)

HSP 1 Score: 105.1 bits (261), Expect = 3.5e-23
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 26  SEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACN 85
           + V+AKRWTVGDN  W  N+NYT+WA+ KHFY DDWL+FVY+RNQ               
Sbjct: 20  TNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVYERNQYXXXXXXXXXXXXXX 79

Query: 86  SENPLKNFTTGAGRDVVHLNVTR 109
              P+ N++ GAGRD+VHLNVTR
Sbjct: 80  XXXPIANWSRGAGRDLVHLNVTR 102

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BLAST of Carg26977 vs. TAIR10
Match: AT2G27035.1 (early nodulin-like protein 20)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-21
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 36  GDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTT 95
           G    W S+VN++ WA  + FY  DWL+F ++R + ++L+VNK++YE C   + + N T 
Sbjct: 32  GGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHNILQVNKSSYEQCVDNDYIFNITR 91

Query: 96  GAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPP 135
           G GRDV  L   +PYYFI G+G+C  GMKLAI V   PP
Sbjct: 92  G-GRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLPQPP 129

[Close]

BLAST of Carg26977 vs. TAIR10
Match: AT3G20570.1 (early nodulin-like protein 9)

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-14
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 30  AKRWTVGDNMGWT---SNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 89
           A+ +TVG   GWT    +  Y+ WAE   F   D L FVY  NQ  VL+V +  Y++CN+
Sbjct: 27  AREFTVGGATGWTVPSGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNT 86

Query: 90  ENPLKNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAINV 130
           ++P   F    G+  V LN + PYYFISG K  C    KL + V
Sbjct: 87  DSPTAKFAD--GKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIV 128

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BLAST of Carg26977 vs. Swiss-Prot
Match: sp|Q39131|LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-40
Identity = 68/113 (60.18%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 28  VSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSE 87
           V+AK++TVG+N  W  N+NYT+WA+GKHFY  DWL+FV+DRNQ ++LEVNKT+YE C ++
Sbjct: 24  VTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIAD 83

Query: 88  NPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           +P++N+T GAGRD+V LN T+ YY + GKG CYGGMKL++ VE LPP P++ P
Sbjct: 84  HPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAP 136

[Close]

BLAST of Carg26977 vs. Swiss-Prot
Match: sp|Q9SK27|ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-12
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 26  SEVSAKRWTVGDNMG-W----TSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTN 85
           S  +A   TVG   G W    +S+ ++T WA+   F   D++ F Y+  +  VLEV K  
Sbjct: 24  SLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEA 83

Query: 86  YEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAINV 130
           Y +CN+ NPL N+T G  +  V L+ + P+YFISG  G C  G KL++ V
Sbjct: 84  YNSCNTTNPLANYTDGETK--VKLDRSGPFYFISGANGHCEKGQKLSLVV 131

[Close]

BLAST of Carg26977 vs. Swiss-Prot
Match: sp|Q9T076|ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-11
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 29  SAKRWTVGDNMGWTSN--VNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 88
           +A+++ VG +  W +N   NY  W+    F   D L+F Y +    VLEVNK +Y+ACN+
Sbjct: 27  NARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNT 86

Query: 89  ENPLKNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAINV 130
           +NP+K    G     + L+   P+YFISG +  C  G KL + V
Sbjct: 87  KNPIKRVDDGDSE--ISLDRYGPFYFISGNEDNCKKGQKLNVVV 128

[Close]

BLAST of Carg26977 vs. Swiss-Prot
Match: sp|Q96316|BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 28  VSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSE 87
           V A  + VGD  GWTSN++YTVW  GK F   D L FVY  +   V  V+K  Y+ C+S 
Sbjct: 19  VFAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLSH-SVSVVDKAGYDNCDSS 78

Query: 88  NPLKNFTTGAGRDVVHLNVTRPYYFISGK-GFCYGGMKLAINV 130
              +NF  G  +  + L      +F+    G C  GMKLA+ V
Sbjct: 79  GATQNFADGDTK--IDLTTVGTMHFLCPTFGHCKNGMKLAVPV 118

[Close]

BLAST of Carg26977 vs. Swiss-Prot
Match: sp|Q41001|BCP_PEA (Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 38/98 (38.78%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 33  WTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSENPLKN 92
           +TVGD  GW    +Y+ WA  K F   D L F Y      V EV +++Y++C S N +  
Sbjct: 27  YTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSIST 86

Query: 93  FTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAINV 130
            +TGA    + L     +YFI G  G   GGMKL+I V
Sbjct: 87  DSTGA--TTIPLKKAGKHYFICGVPGHSTGGMKLSIKV 122

[Close]

BLAST of Carg26977 vs. TrEMBL
Match: tr|A0A1S3B7D2|A0A1S3B7D2_CUCME (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486966 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-53
Identity = 97/114 (85.09%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EVSA RWTVG NMGWT+NVNY+ WA+GKHFYYDDWLFFVYDRNQM+VLEVNKT+YE C S
Sbjct: 30  EVSATRWTVGGNMGWTTNVNYSTWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCIS 89

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           ++PL NFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAI+VEHLPP P A P
Sbjct: 90  DHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVEHLPPPPSALP 143

[Close]

BLAST of Carg26977 vs. TrEMBL
Match: tr|A0A0A0LC11|A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824220 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 8.7e-53
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EVSA RWTVG NMGW +NVNYT WA+GKHFYYDDWLFFVYDRNQM+VLEVNKT+YE C S
Sbjct: 29  EVSATRWTVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCIS 88

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           ++PL NFTTGAGRDVVHLNVTRPYYFISGKGFC+GGMKLAI+VEHLPP P + P
Sbjct: 89  DHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLPPPPSSSP 142

[Close]

BLAST of Carg26977 vs. TrEMBL
Match: tr|A9PAA9|A9PAA9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G088600v3 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-49
Identity = 90/114 (78.95%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EVSA RWTVG NMGWTSNVNYT+WA+GKHFY  DWLFFVYDRNQM++LEVNKT+YE+CNS
Sbjct: 28  EVSATRWTVGSNMGWTSNVNYTIWAQGKHFYNGDWLFFVYDRNQMNILEVNKTDYESCNS 87

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           ++PL N+T GAGRDVV LNVTR YYFISGKGFCYGGMKLA++VE+ PP P A P
Sbjct: 88  DHPLHNWTRGAGRDVVPLNVTRNYYFISGKGFCYGGMKLAVHVENPPPPPTASP 141

[Close]

BLAST of Carg26977 vs. TrEMBL
Match: tr|A0A2P5FEV8|A0A2P5FEV8_9ROSA (Cupredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_079200 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-49
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EVSAKRW VGDNMGWTSNVNYT+WA+ KHFY  DWLFFVYDRNQMDV+EVNKTNYE CN+
Sbjct: 34  EVSAKRWIVGDNMGWTSNVNYTIWAQDKHFYNGDWLFFVYDRNQMDVIEVNKTNYETCNA 93

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           E+ L N+TTGAGRDVV LNVTR YYFIS KGFCYGGMK+A+ VE+LPP P A P
Sbjct: 94  EHILHNWTTGAGRDVVPLNVTRHYYFISSKGFCYGGMKVAVRVENLPPPPSASP 147

[Close]

BLAST of Carg26977 vs. TrEMBL
Match: tr|A0A2P5CY92|A0A2P5CY92_PARAD (Cupredoxin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_112140 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-49
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 27  EVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNS 86
           EVSAKRW VGDNMGWTSNVNYT+WA+ KHFY  DWLFFVYDRNQMDV+EVNKTNYE CN+
Sbjct: 34  EVSAKRWIVGDNMGWTSNVNYTIWAQDKHFYNGDWLFFVYDRNQMDVIEVNKTNYETCNA 93

Query: 87  ENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPRPRAHP 141
           E+ L N+TTGAGRDVV LNVTR YYFIS KGFCYGGMK+A+ VE+LPP P A P
Sbjct: 94  EHILHNWTTGAGRDVVPLNVTRHYYFISSKGFCYGGMKVAVRVENLPPPPSASP 147

The following BLAST results are available for this feature:

BLAST of Carg26977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933881.1	3.1e-62	97.14	lamin-like protein [Cucurbita moschata]	[more]
XP_023530287.1	3.1e-62	97.14	lamin-like protein [Cucurbita pepo subsp. pepo] >XP_023530288.1 lamin-like prote...	[more]
XP_022970072.1	1.5e-61	95.65	lamin-like protein [Cucurbita maxima]	[more]
XP_022935116.1	3.1e-54	85.96	lamin-like protein [Cucurbita moschata]	[more]
XP_023528207.1	5.3e-54	85.96	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg26977 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15350.1	9.7e-42	60.18	early nodulin-like protein 17	[more]
AT4G12880.1	2.4e-32	55.77	early nodulin-like protein 19	[more]
AT3G01070.1	3.5e-23	54.22	early nodulin-like protein 16	[more]
AT2G27035.1	1.9e-21	46.46	early nodulin-like protein 20	[more]
AT3G20570.1	8.6e-14	41.35	early nodulin-like protein 9	[more]

BLAST of Carg26977 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39131\|LAML_ARATH	1.7e-40	60.18	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
sp\|Q9SK27\|ENL1_ARATH	7.7e-12	39.09	Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 S...	[more]
sp\|Q9T076\|ENL2_ARATH	1.7e-11	37.50	Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S...	[more]
sp\|Q96316\|BCB3_ARATH	1.1e-10	39.81	Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1	[more]
sp\|Q41001\|BCP_PEA	4.2e-10	38.78	Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Carg26977 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7D2\|A0A1S3B7D2_CUCME	1.7e-53	85.09	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486966 PE=4 SV=1	[more]
tr\|A0A0A0LC11\|A0A0A0LC11_CUCSA	8.7e-53	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824220 PE=4 SV=1	[more]
tr\|A9PAA9\|A9PAA9_POPTR	3.4e-49	78.95	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G088600v3 PE=...	[more]
tr\|A0A2P5FEV8\|A0A2P5FEV8_9ROSA	3.4e-49	79.82	Cupredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_079200 PE=4 SV=1	[more]
tr\|A0A2P5CY92\|A0A2P5CY92_PARAD	3.4e-49	79.82	Cupredoxin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_112140 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR039391	Phytocyanin
IPR008972	Cupredoxin
IPR003245	Phytocyanin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26977-RA	Carg26977-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 41..123 e-value: 3.2E-21 score: 75.0
IPR003245	Phytocyanin domain	PRODOM	PD003122		coord: 64..140 e-value: 1.0E-23 score: 266.0
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 31..131 score: 35.009
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 29..133 e-value: 4.8E-30 score: 105.8
IPR008972	Cupredoxin	SUPERFAMILY	SSF49503	Cupredoxins	coord: 30..129
IPR039391	Phytocyanin	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 14..140
None	No IPR available	PANTHER	PTHR33021:SF63	LAMIN-LIKE PROTEIN	coord: 14..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26977	CmaCh11G011590	Cucurbita maxima (Rimu)	carcmaB1143
Carg26977	CmoCh11G012010	Cucurbita moschata (Rifu)	carcmoB1113
Carg26977	Cp4.1LG04g00310	Cucurbita pepo (Zucchini)	carcpeB1154

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None