Carg26894 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26894
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitotic-spindle organizing protein 1
Location	Cucurbita_argyrosperma_scaffold_247 : 165515 .. 165870 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAGAGGCTGCACGAACGGCTCGGGAATCGCTAGACCTTGCATTTCATATGTGTAACGTAATCGATGCCGGGATCGATCGCCACACCCTCTCTGTCCTTATTGCACTCTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTAAGCAGAGAACCGCCCTCATCGGAAACCATCATCTCAGGTAACAAGTCATAACCTATATGCAAAGAAACAACTCTGTTCTTCTTGTGATGATGGTTGCTAAAGTTGATATCTATGTGTTTTTAAACCACTTTACTATATATGTAGCTTACTTGTTTACTATATATGTAGCTTACTTGGATCTTGTGAGATGA

mRNA sequence

ATGGATCCAGAGGCTGCACGAACGGCTCGGGAATCGCTAGACCTTGCATTTCATATGTGTAACGTAATCGATGCCGGGATCGATCGCCACACCCTCTCTGTCCTTATTGCACTCTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTAAGCAGAGAACCGCCCTCATCGGAAACCATCATCTCAGCTTACTTGGATCTTGTGAGATGA

Coding sequence (CDS)

ATGGATCCAGAGGCTGCACGAACGGCTCGGGAATCGCTAGACCTTGCATTTCATATGTGTAACGTAATCGATGCCGGGATCGATCGCCACACCCTCTCTGTCCTTATTGCACTCTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTAAGCAGAGAACCGCCCTCATCGGAAACCATCATCTCAGCTTACTTGGATCTTGTGAGATGA

Protein sequence

MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPPSSETIISAYLDLVR

Homology

[Close]

BLAST of Carg26894 vs. NCBI nr
Match: XP_022973921.1 (mitotic-spindle organizing protein 1B-like [Cucurbita maxima] >XP_022973922.1 mitotic-spindle organizing protein 1B-like [Cucurbita maxima])

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-26
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MDPEAARTARESLDLAFHM NV+DAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60

Query: 61 SSETIIS 68
          SSETI S
Sbjct: 61 SSETITS 67

[Close]

BLAST of Carg26894 vs. NCBI nr
Match: XP_011649034.1 (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus] >KGN61346.1 hypothetical protein Csa_2G094370 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.1e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MD EAARTARESLDLAFHM NV+DAGIDRHTLSVLIALCDMGVNPEALAAVVKEL REPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETIISA 69
          SS+TI+S+
Sbjct: 61 SSDTIVSS 68

[Close]

BLAST of Carg26894 vs. NCBI nr
Match: XP_022151721.1 (mitotic-spindle organizing protein 1B [Momordica charantia] >XP_022151722.1 mitotic-spindle organizing protein 1B [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MDPEAARTARESLDLAFHM N+++ GIDRHTLS+LIALCDMGVNPEALAAVVKEL REPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILNTGIDRHTLSILIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETIIS 68
          S ETIIS
Sbjct: 61 SGETIIS 67

[Close]

BLAST of Carg26894 vs. NCBI nr
Match: XP_008441751.1 (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441752.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441753.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441755.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441756.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441757.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 4.0e-24
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MD EAARTARESLDLAFHM NV+D+GIDRHTLSVLIALCDMGVNPEALAAVVKEL REPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETIISA 69
          SSET +S+
Sbjct: 61 SSETNVSS 68

[Close]

BLAST of Carg26894 vs. NCBI nr
Match: XP_022932035.1 (mitotic-spindle organizing protein 1B-like [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-23
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MDPEAARTARESLDLAFH+ N+++ GIDRHTLSVLIALCDMGVNPEALAAVVKEL +EPP
Sbjct: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60

Query: 61 SSETIIS 68
          SSE IIS
Sbjct: 61 SSEAIIS 67

[Close]

BLAST of Carg26894 vs. TAIR10
Match: AT4G09550.1 (AtGCP3 interacting protein 1)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-20
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREP- 60
          MD EA+RTARESL+L F M N++D G+DRHTLSVLIALCD+GVNPEALA VVKEL RE  
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESI 60

Query: 61 PSSET 65
          P S T
Sbjct: 61 PDSVT 65

[Close]

BLAST of Carg26894 vs. TAIR10
Match: AT1G73790.1 (Protein of unknown function (DUF3743))

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-18
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          M+ EAA TARESL+L F M N+++ G+DRHTLSVLIALCD+G+NPEALA +VKEL R+  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSETII 67
          ++ T +
Sbjct: 61 TTTTTV 66

[Close]

BLAST of Carg26894 vs. Swiss-Prot
Match: sp|Q9M0N8|MZT1B_ARATH (Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana OX=3702 GN=GIP1 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.8e-19
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREP- 60
          MD EA+RTARESL+L F M N++D G+DRHTLSVLIALCD+GVNPEALA VVKEL RE  
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESI 60

Query: 61 PSSET 65
          P S T
Sbjct: 61 PDSVT 65

[Close]

BLAST of Carg26894 vs. Swiss-Prot
Match: sp|Q9C9T3|MZT1A_ARATH (Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana OX=3702 GN=GIP2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-17
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          M+ EAA TARESL+L F M N+++ G+DRHTLSVLIALCD+G+NPEALA +VKEL R+  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSETII 67
          ++ T +
Sbjct: 61 TTTTTV 66

[Close]

BLAST of Carg26894 vs. Swiss-Prot
Match: sp|A9NKD9|MZT1_PICSI (Mitotic-spindle organizing protein 1 OS=Picea sitchensis OX=3332 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-16
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSRE 59
          MD  AA+ ARESLDLAF + N +  G+DRHTLS+LIALC+ GVNPEALAAVVKEL RE
Sbjct: 1  MDRTAAQNARESLDLAFSISNFLQTGLDRHTLSILIALCEHGVNPEALAAVVKELRRE 58

[Close]

BLAST of Carg26894 vs. Swiss-Prot
Match: sp|B5FXZ4|MZT1_TAEGU (Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata OX=59729 GN=mzt1 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 21/48 (43.75%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 10 RESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSR 58
          RE++D+ F +  +++ G+D  TLS+ + LC+ G+NPEAL++V+KEL +
Sbjct: 12 RETMDVLFEISRILNTGLDMETLSICVRLCEQGINPEALSSVIKELRK 59

[Close]

BLAST of Carg26894 vs. Swiss-Prot
Match: sp|Q0VFD6|MZT1_XENTR (Mitotic-spindle organizing protein 1 OS=Xenopus tropicalis OX=8364 GN=mzt1 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-07
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 10 RESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPPSSETI 66
          RE++D+   +  +++ G+D  TLS+ + LC+ G+NPEAL++V+KEL R   +SET+
Sbjct: 12 RETMDVLLEISRLLNTGLDMETLSICVRLCEQGINPEALSSVIKELRR---ASETL 64

[Close]

BLAST of Carg26894 vs. TrEMBL
Match: tr|A0A0A0LMZ6|A0A0A0LMZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094370 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MD EAARTARESLDLAFHM NV+DAGIDRHTLSVLIALCDMGVNPEALAAVVKEL REPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETIISA 69
          SS+TI+S+
Sbjct: 61 SSDTIVSS 68

[Close]

BLAST of Carg26894 vs. TrEMBL
Match: tr|A0A1S3B468|A0A1S3B468_CUCME (mitotic-spindle organizing protein 1A-like OS=Cucumis melo OX=3656 GN=LOC103485818 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MD EAARTARESLDLAFHM NV+D+GIDRHTLSVLIALCDMGVNPEALAAVVKEL REPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETIISA 69
          SSET +S+
Sbjct: 61 SSETNVSS 68

[Close]

BLAST of Carg26894 vs. TrEMBL
Match: tr|A0A0D2TES9|A0A0D2TES9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G288400 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MDPEAARTARESLDLAFHM N++D G+DRHTLSVLIALCD+G+NPEALAAVVKEL REPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 61 SSETIISA 69
           S  + S+
Sbjct: 61 PSTPLSSS 68

[Close]

BLAST of Carg26894 vs. TrEMBL
Match: tr|A0A1U8P1Z1|A0A1U8P1Z1_GOSHI (mitotic-spindle organizing protein 1B-like isoform X3 OS=Gossypium hirsutum OX=3635 GN=LOC107954232 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-22
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MDPEAARTARESLDLAFHM N++D G+DRHTLSVL+ALCD+G+NPEALAAVVKEL REPP
Sbjct: 8  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLVALCDLGLNPEALAAVVKELQREPP 67

Query: 61 SSETIISA 69
           S    S+
Sbjct: 68 PSTPFSSS 75

[Close]

BLAST of Carg26894 vs. TrEMBL
Match: tr|A0A1U8P1Y3|A0A1U8P1Y3_GOSHI (mitotic-spindle organizing protein 1B-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107954232 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-22
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MDPEAARTARESLDLAFHMCNVIDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60
          MDPEAARTARESLDLAFHM N++D G+DRHTLSVL+ALCD+G+NPEALAAVVKEL REPP
Sbjct: 9  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLVALCDLGLNPEALAAVVKELQREPP 68

Query: 61 SSETIISA 69
           S    S+
Sbjct: 69 PSTPFSSS 76

The following BLAST results are available for this feature:

BLAST of Carg26894 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973921.1	3.2e-26	95.52	mitotic-spindle organizing protein 1B-like [Cucurbita maxima] >XP_022973922.1 mi...	[more]
XP_011649034.1	6.1e-25	89.71	PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus] >KGN6134...	[more]
XP_022151721.1	1.8e-24	88.06	mitotic-spindle organizing protein 1B [Momordica charantia] >XP_022151722.1 mito...	[more]
XP_008441751.1	4.0e-24	88.24	PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_0084417...	[more]
XP_022932035.1	1.5e-23	86.57	mitotic-spindle organizing protein 1B-like [Cucurbita moschata]	[more]

BLAST of Carg26894 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09550.1	3.2e-20	73.85	AtGCP3 interacting protein 1	[more]
AT1G73790.1	2.3e-18	62.12	Protein of unknown function (DUF3743)	[more]

BLAST of Carg26894 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M0N8\|MZT1B_ARATH	5.8e-19	73.85	Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana OX=3702 GN=GIP1 PE...	[more]
sp\|Q9C9T3\|MZT1A_ARATH	4.2e-17	62.12	Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana OX=3702 GN=GIP2 PE...	[more]
sp\|A9NKD9\|MZT1_PICSI	4.6e-16	72.41	Mitotic-spindle organizing protein 1 OS=Picea sitchensis OX=3332 PE=3 SV=1	[more]
sp\|B5FXZ4\|MZT1_TAEGU	1.8e-07	43.75	Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata OX=59729 GN=mzt1 PE=...	[more]
sp\|Q0VFD6\|MZT1_XENTR	3.0e-07	42.86	Mitotic-spindle organizing protein 1 OS=Xenopus tropicalis OX=8364 GN=mzt1 PE=3 ...	[more]

BLAST of Carg26894 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMZ6\|A0A0A0LMZ6_CUCSA	4.0e-25	89.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094370 PE=4 SV=1	[more]
tr\|A0A1S3B468\|A0A1S3B468_CUCME	2.6e-24	88.24	mitotic-spindle organizing protein 1A-like OS=Cucumis melo OX=3656 GN=LOC1034858...	[more]
tr\|A0A0D2TES9\|A0A0D2TES9_GOSRA	3.2e-22	79.41	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G288400 PE=4 ...	[more]
tr\|A0A1U8P1Z1\|A0A1U8P1Z1_GOSHI	7.1e-22	77.94	mitotic-spindle organizing protein 1B-like isoform X3 OS=Gossypium hirsutum OX=3...	[more]
tr\|A0A1U8P1Y3\|A0A1U8P1Y3_GOSHI	7.1e-22	77.94	mitotic-spindle organizing protein 1B-like isoform X2 OS=Gossypium hirsutum OX=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0033566	gamma-tubulin complex localization

Vocabulary: **Cellular Component**
Term	Definition
GO:0008274	gamma-tubulin ring complex

Vocabulary: **INTERPRO**
Term	Definition
IPR022214	MZT1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033566	gamma-tubulin complex localization
cellular_component	GO:0008274	gamma-tubulin ring complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26894-RA	Carg26894-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022214	Mitotic-spindle organizing protein 1	PFAM	PF12554	MOZART1	coord: 10..55 e-value: 5.1E-17 score: 61.2
IPR022214	Mitotic-spindle organizing protein 1	PANTHER	PTHR28520	FAMILY NOT NAMED	coord: 1..67
None	No IPR available	PANTHER	PTHR28520:SF5	SUBFAMILY NOT NAMED	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26894	Csa2G094370	Cucumber (Chinese Long) v2	carcuB0260
Carg26894	MELO3C008583	Melon (DHL92) v3.5.1	carmeB0237
Carg26894	CSPI02G08000	Wild cucumber (PI 183967)	carcpiB0264
Carg26894	CmaCh05G008000	Cucurbita maxima (Rimu)	carcmaB0322
Carg26894	CmoCh05G008460	Cucurbita moschata (Rifu)	carcmoB0327
Carg26894	Lsi11G009460	Bottle gourd (USVL1VR-Ls)	carlsiB208
Carg26894	CsGy2G008280	Cucumber (Gy14) v2	carcgybB0249
Carg26894	MELO3C008583.2	Melon (DHL92) v3.6.1	carmedB0245
Carg26894	CsaV3_2G010390	Cucumber (Chinese Long) v3	carcucB0264
Carg26894	Bhi06G000822	Wax gourd	carwgoB0289

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26894	Cucurbita pepo (Zucchini)	carcpeB0330