Carg26890 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26890
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	phospholipase A(1) LCAT3
Location	Cucurbita_argyrosperma_scaffold_247 : 103411 .. 104819 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTCTTTCTTCCATGTTTCGGATCCTGGATGCCCGAATCCGAACCCGAACCCGATCGCGACCCGGTTCTGCTCGTCTCCGGCATTGGCGGCTCCATCATTCACGCCAAGAACAAGAAATTGTTCGGCTTACAGACTCGCGTATGGGTCCGAATCTTCTTGTCTGACCTGGTGTTCCGTGAGAACCTCATTTCCATCTACAATCCCGGCACAGGTCCTTACTCATTCTTTCCAATTGTCTCTCTATGTTTGTTTGTTACCTTTTATATTTCAGCGTTTCTGGTTGATTCGGCAGTGATGGAACTTAGGTGGGTTTATTTTATTCCATCTGCACGTGTTTTGGGGTTCCTTTTAGGGTGGGGCAAATTTCAGACCACCTTTTCCTCTTCCTTTTACATTATGTTCCCCACTCCTTTTCTTAAAGCTGCTTTTAATCAAATTTTGTGTTTTCTTTTGCTTTCAGAATCATATCTTGAATGTTTCTTAGATCATTATGATATTTTTTGTGCATTAAAAAAAAAAAAAAAAAAAGGAAATAGCTTATAGTTGTCTAGAGAATTTCTTATTTTACCACCATTCTGTTTACCAACTCAAACTGGTGGTAGGAGAATGATGAACACTCAAGACTAAACTAAACTACTACAGTGTTCCCTTCTATTTATAGCAAACTCTAATTGTTTTTGAAAATTAGGCTTGTTCCTTCTTAATTTATTTACTATAATTTTTACTACATTTGTTTATTTTGTCAACTTTACTTTTTAAAATCTAGCTTTTTTTAGATTCTAAAACTTGACTTGAATTTTGAAACCATTTTTAGATATAGATAACAAAATATAAAAAACTAATGGGTGGGGATGGAACATTTATGAATTTAATTTTAAAAGCCTGAATGGTTATCAAATTGGTCGCTTTAGGTGATGTAGTTCCATATTTCTTAGTCATTTTATTTGTTTTAGGGAGATTTTTTTTTTCCTTCACTAATCCTCGCTGATTCGTTGCTTGATCAGTAGGAAGAAAATTTTCTCTTTTGTATTTCAGGTCGAAGTTAATGTTTATTTTTAATATAAAAAGAAGATTAAAATACTATTAGTCTCTGTACTCTTAACTTTTGTTTGTTTTAACCTTTGTACTTTCAAAACGACTATTTAGAACTATATGCTTTAAGAAATTTTACTTGTTGAATAAGGAATGACCTTGATTTAAGAAATATTTGTGTAAATCGTAGCCTTTATGTTAAAGAGATATTTACATAATCTCGTTAAAGAACTAGTTGATCTTCCTACTTTATCTGTATTATTACACGAGATTTAATTAGCTTTTTGTATTATAAAAGGTACATGTACGAAAAGTCACAAGATAATTTAGACTAA

mRNA sequence

ATGGTTGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTCTTTCTTCCATGTTTCGGATCCTGGATGCCCGAATCCGAACCCGAACCCGATCGCGACCCGGTTCTGCTCGTCTCCGGCATTGGCGGCTCCATCATTCACGCCAAGAACAAGAAATTGTTCGGCTTACAGACTCGCGTATGGGTCCGAATCTTCTTGTCTGACCTGGTGTTCCGTGAGAACCTCATTTCCATCTACAATCCCGGCACAGCGTTTCTGGTTGATTCGGCAGTGATGGAACTTAGGTACATGTACGAAAAGTCACAAGATAATTTAGACTAA

Coding sequence (CDS)

ATGGTTGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTCTTTCTTCCATGTTTCGGATCCTGGATGCCCGAATCCGAACCCGAACCCGATCGCGACCCGGTTCTGCTCGTCTCCGGCATTGGCGGCTCCATCATTCACGCCAAGAACAAGAAATTGTTCGGCTTACAGACTCGCGTATGGGTCCGAATCTTCTTGTCTGACCTGGTGTTCCGTGAGAACCTCATTTCCATCTACAATCCCGGCACAGCGTTTCTGGTTGATTCGGCAGTGATGGAACTTAGGTACATGTACGAAAAGTCACAAGATAATTTAGACTAA

Protein sequence

MVGRGGGGGGGGGGFFLPCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENLISIYNPGTAFLVDSAVMELRYMYEKSQDNLD

Homology

[Close]

BLAST of Carg26890 vs. NCBI nr
Match: XP_022973913.1 (phospholipase A(1) LCAT3 [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 5.3e-30
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 17 LPCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 76
          LPCFGS MPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL
Sbjct: 13 LPCFGSRMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 72

Query: 77 ISIYNPGTAF 87
          ISIYNP T +
Sbjct: 73 ISIYNPDTGY 82

[Close]

BLAST of Carg26890 vs. NCBI nr
Match: XP_023546771.1 (phospholipase A(1) LCAT3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 17 LPCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 76
          LPCFGS MPESEPEPDRDPVLLVSGIGGSIIHAKNKK FGLQTRVWVRIFLSDLVFRENL
Sbjct: 15 LPCFGSRMPESEPEPDRDPVLLVSGIGGSIIHAKNKKFFGLQTRVWVRIFLSDLVFRENL 74

Query: 77 ISIYNPGTAF 87
          ISIYNP T +
Sbjct: 75 ISIYNPDTGY 84

[Close]

BLAST of Carg26890 vs. NCBI nr
Match: XP_004138893.1 (PREDICTED: phospholipase A(1) LCAT3 [Cucumis sativus] >KGN61338.1 hypothetical protein Csa_2G093800 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.3e-25
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 17 LPCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 76
          LPCFGS   +SEPEPDRDPVLLVSGIGGSI+H+KNKKLFGLQTRVWVR+FLSD+VFR+NL
Sbjct: 10 LPCFGS--RKSEPEPDRDPVLLVSGIGGSILHSKNKKLFGLQTRVWVRVFLSDIVFRQNL 69

Query: 77 ISIYNPGTAF 87
          ISIYNP T +
Sbjct: 70 ISIYNPHTGY 77

[Close]

BLAST of Carg26890 vs. NCBI nr
Match: XP_022933151.1 (phospholipase A(1) LCAT3 [Cucurbita moschata])

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 17 LPCFGSWMPESEP--EPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRE 76
          LPCFGS MP+SEP     RDPVLLVSGIGGSIIHAKNKK FGLQTRVWVRIFLSDLVFRE
Sbjct: 14 LPCFGSRMPDSEPXXXXXRDPVLLVSGIGGSIIHAKNKKFFGLQTRVWVRIFLSDLVFRE 73

Query: 77 NLISIYNPGTAF 87
          NLISIYNP T +
Sbjct: 74 NLISIYNPDTGY 85

[Close]

BLAST of Carg26890 vs. NCBI nr
Match: XP_008441766.1 (PREDICTED: phospholipase A(1) LCAT3 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 17 LPCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 76
          LP FGS   +SEPEPDRDPVLLVSGIGGSI+H+KNKKLFGLQTRVWVRIFLSD+VFRENL
Sbjct: 11 LPFFGS--RKSEPEPDRDPVLLVSGIGGSILHSKNKKLFGLQTRVWVRIFLSDIVFRENL 70

Query: 77 ISIYNPGTAF 87
          ISIYNP T +
Sbjct: 71 ISIYNPHTGY 78

[Close]

BLAST of Carg26890 vs. TAIR10
Match: AT3G03310.1 (lecithin:cholesterol acyltransferase 3)

HSP 1 Score: 77.4 bits (189), Expect = 5.9e-15
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 18 PCFGSWMPESEPE-PDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 77
          PC+G+   E+  E  DRDPVLLVSGIGGSI+H+K KK    + RVWVRIFL++L F+++L
Sbjct: 7  PCWGTNDDENAGEVADRDPVLLVSGIGGSILHSK-KKNSKSEIRVWVRIFLANLAFKQSL 66

Query: 78 ISIYNPGTAF 87
           S+YNP T +
Sbjct: 67 WSLYNPKTGY 75

[Close]

BLAST of Carg26890 vs. TAIR10
Match: AT4G19860.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.7e-07
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 30 EPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENLISIYNPGT 85
          +P+ +PVLLV GI GSI++A + +  G + RVWVRIF +D  FR  + S ++P T
Sbjct: 28 DPNLNPVLLVPGIAGSILNAVDHE-NGNEERVWVRIFGADHEFRTKMWSRFDPST 81

[Close]

BLAST of Carg26890 vs. Swiss-Prot
Match: sp|Q93V61|LCAT3_ARATH (Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana OX=3702 GN=LCAT3 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 18 PCFGSWMPESEPE-PDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 77
          PC+G+   E+  E  DRDPVLLVSGIGGSI+H+K KK    + RVWVRIFL++L F+++L
Sbjct: 7  PCWGTNDDENAGEVADRDPVLLVSGIGGSILHSK-KKNSKSEIRVWVRIFLANLAFKQSL 66

Query: 78 ISIYNPGTAF 87
           S+YNP T +
Sbjct: 67 WSLYNPKTGY 75

[Close]

BLAST of Carg26890 vs. Swiss-Prot
Match: sp|Q71N54|LCAT4_ARATH (Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana OX=3702 GN=LCAT4 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-05
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 30 EPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENLISIYNPGT 85
          +P+ +PVLLV GI GSI++A + +  G + RVWVRIF +D  FR  + S ++P T
Sbjct: 28 DPNLNPVLLVPGIAGSILNAVDHE-NGNEERVWVRIFGADHEFRTKMWSRFDPST 81

[Close]

BLAST of Carg26890 vs. TrEMBL
Match: tr|A0A0A0LHR5|A0A0A0LHR5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093800 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 17 LPCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 76
          LPCFGS   +SEPEPDRDPVLLVSGIGGSI+H+KNKKLFGLQTRVWVR+FLSD+VFR+NL
Sbjct: 10 LPCFGS--RKSEPEPDRDPVLLVSGIGGSILHSKNKKLFGLQTRVWVRVFLSDIVFRQNL 69

Query: 77 ISIYNPGTAF 87
          ISIYNP T +
Sbjct: 70 ISIYNPHTGY 77

[Close]

BLAST of Carg26890 vs. TrEMBL
Match: tr|A0A1S3B3Q4|A0A1S3B3Q4_CUCME (phospholipase A(1) LCAT3 OS=Cucumis melo OX=3656 GN=LOC103485824 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 17 LPCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 76
          LP FGS   +SEPEPDRDPVLLVSGIGGSI+H+KNKKLFGLQTRVWVRIFLSD+VFRENL
Sbjct: 11 LPFFGS--RKSEPEPDRDPVLLVSGIGGSILHSKNKKLFGLQTRVWVRIFLSDIVFRENL 70

Query: 77 ISIYNPGTAF 87
          ISIYNP T +
Sbjct: 71 ISIYNPHTGY 78

[Close]

BLAST of Carg26890 vs. TrEMBL
Match: tr|A0A2K3N0U0|A0A2K3N0U0_TRIPR (Phospholipase A(1) LCAT3-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g019870 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-15
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 18 PCFGSWMPESE-PEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENL 77
          PCFG     SE P  DRDP+LLVSG+GGSI+H+K KK FGL TRVWVRIFL+DL FR+ +
Sbjct: 5  PCFGDDYEGSENPPADRDPLLLVSGMGGSILHSKPKK-FGLTTRVWVRIFLADLEFRKKI 64

Query: 78 ISIYNPGTAF 87
           S+YNP T +
Sbjct: 65 WSLYNPQTGY 73

[Close]

BLAST of Carg26890 vs. TrEMBL
Match: tr|A0A2C9UML5|A0A2C9UML5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G001900 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 18 PCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENLI 77
          PCFGS     + +PDR+PVLLVSGIGGSI+H+KNKK FG Q RVWVRI L+D  F++ + 
Sbjct: 9  PCFGS-RSSVDTDPDRNPVLLVSGIGGSILHSKNKK-FGFQNRVWVRILLADYEFKKRIW 68

Query: 78 SIYNPGTAF 87
          S+YNP T +
Sbjct: 69 SLYNPNTGY 75

[Close]

BLAST of Carg26890 vs. TrEMBL
Match: tr|A0A061F5E5|A0A061F5E5_THECC (Lecithin:cholesterol acyltransferase 3 OS=Theobroma cacao OX=3641 GN=TCM_025110 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.2e-15
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 18 PCFGSWMPESEPEPDRDPVLLVSGIGGSIIHAKNKKLFGLQTRVWVRIFLSDLVFRENLI 77
          PCFGS   E EPE + DPVLLVSG+GGSI+H+K KK FG +TRVWVRI  SDL F++ L 
Sbjct: 9  PCFGSRGSE-EPEMELDPVLLVSGMGGSILHSKRKK-FGFETRVWVRILFSDLEFKKKLW 68

Query: 78 SIYNPGTAF 87
          S+YNP T +
Sbjct: 69 SLYNPETGY 75

The following BLAST results are available for this feature:

BLAST of Carg26890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973913.1	5.3e-30	94.29	phospholipase A(1) LCAT3 [Cucurbita maxima]	[more]
XP_023546771.1	1.6e-29	92.86	phospholipase A(1) LCAT3 [Cucurbita pepo subsp. pepo]	[more]
XP_004138893.1	2.3e-25	82.86	PREDICTED: phospholipase A(1) LCAT3 [Cucumis sativus] >KGN61338.1 hypothetical p...	[more]
XP_022933151.1	3.0e-25	84.72	phospholipase A(1) LCAT3 [Cucurbita moschata]	[more]
XP_008441766.1	1.5e-24	84.29	PREDICTED: phospholipase A(1) LCAT3 [Cucumis melo]	[more]

BLAST of Carg26890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03310.1	5.9e-15	57.14	lecithin:cholesterol acyltransferase 3	[more]
AT4G19860.1	7.7e-07	47.27	alpha/beta-Hydrolases superfamily protein	[more]

BLAST of Carg26890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93V61\|LCAT3_ARATH	1.1e-13	57.14	Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana OX=3702 GN=LCAT3 PE=1 SV=1	[more]
sp\|Q71N54\|LCAT4_ARATH	1.4e-05	47.27	Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of Carg26890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHR5\|A0A0A0LHR5_CUCSA	1.5e-25	82.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093800 PE=4 SV=1	[more]
tr\|A0A1S3B3Q4\|A0A1S3B3Q4_CUCME	1.0e-24	84.29	phospholipase A(1) LCAT3 OS=Cucumis melo OX=3656 GN=LOC103485824 PE=4 SV=1	[more]
tr\|A0A2K3N0U0\|A0A2K3N0U0_TRIPR	2.5e-15	64.29	Phospholipase A(1) LCAT3-like protein (Fragment) OS=Trifolium pratense OX=57577 ...	[more]
tr\|A0A2C9UML5\|A0A2C9UML5_MANES	4.2e-15	60.87	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G001900 PE=4 SV=...	[more]
tr\|A0A061F5E5\|A0A061F5E5_THECC	7.2e-15	63.77	Lecithin:cholesterol acyltransferase 3 OS=Theobroma cacao OX=3641 GN=TCM_025110 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26890-RA	Carg26890-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11440	LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED	coord: 16..86
None	No IPR available	PANTHER	PTHR11440:SF53	PHOSPHOLIPASE A 1 LCAT3	coord: 16..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26890	CmoCh05G008400	Cucurbita moschata (Rifu)	carcmoB0327

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26890	Cucumber (Gy14) v2	carcgybB0249
Carg26890	Cucurbita maxima (Rimu)	carcmaB0322
Carg26890	Cucurbita pepo (Zucchini)	carcpeB0330
Carg26890	Wild cucumber (PI 183967)	carcpiB0264
Carg26890	Cucumber (Chinese Long) v2	carcuB0260
Carg26890	Cucumber (Chinese Long) v3	carcucB0264
Carg26890	Bottle gourd (USVL1VR-Ls)	carlsiB208
Carg26890	Melon (DHL92) v3.5.1	carmeB0237
Carg26890	Melon (DHL92) v3.6.1	carmedB0245
Carg26890	Wax gourd	carwgoB0289