Carg26879 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26879
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GDT1-like protein
Location	Cucurbita_argyrosperma_scaffold_391 : 49055 .. 49394 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATCGTATTGGATGTGAATGGAAAACAACACAGTTACCTACCTGTTTTTCTAGTTGGAAGTGTCACTAATAACTTTCCTTTCAGGGGACAGGCATTGTGTACAACTGCTGCAGTCCTTGGAGGAAGGAGCTTGGCGTCACAAATCTCTGAGAAAATTGTATTCAACATTTGATTTGCTCTTTTTTCACGCTGAAGTATTAGTTACTTAGTGTTATTATTGTTGAACAGCGTAATTAAGTCATATTTTCGTTTCTCCTTTTCAGGTTGCTCTCTCAGGTGGGGTTCTGTTCATTGTTTTTGGAATCCAGTCGTTCCTCTCAACTGTCGAGCCGTAA

mRNA sequence

ATGATAATCGTATTGGATGTGAATGGAAAACAACACAGTTACCTACCTGTTTTTCTAGTTGGAAGTGTCACTAATAACTTTCCTTTCAGGGGACAGGCATTGTGTACAACTGCTGCAGTCCTTGGAGGAAGGAGCTTGGCGTCACAAATCTCTGAGAAAATTGTTGCTCTCTCAGGTGGGGTTCTGTTCATTGTTTTTGGAATCCAGTCGTTCCTCTCAACTGTCGAGCCGTAA

Coding sequence (CDS)

ATGATAATCGTATTGGATGTGAATGGAAAACAACACAGTTACCTACCTGTTTTTCTAGTTGGAAGTGTCACTAATAACTTTCCTTTCAGGGGACAGGCATTGTGTACAACTGCTGCAGTCCTTGGAGGAAGGAGCTTGGCGTCACAAATCTCTGAGAAAATTGTTGCTCTCTCAGGTGGGGTTCTGTTCATTGTTTTTGGAATCCAGTCGTTCCTCTCAACTGTCGAGCCGTAA

Protein sequence

MIIVLDVNGKQHSYLPVFLVGSVTNNFPFRGQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP

Homology

[Close]

BLAST of Carg26879 vs. NCBI nr
Match: XP_022938546.1 (GDT1-like protein 4 [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 78
           GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP
Sbjct: 184 GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 230

[Close]

BLAST of Carg26879 vs. NCBI nr
Match: XP_022994046.1 (GDT1-like protein 4 [Cucurbita maxima])

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 78
           GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP
Sbjct: 184 GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 230

[Close]

BLAST of Carg26879 vs. NCBI nr
Match: XP_023551269.1 (GDT1-like protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 78
           GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP
Sbjct: 184 GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 230

[Close]

BLAST of Carg26879 vs. NCBI nr
Match: XP_022964603.1 (GDT1-like protein 4 [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 78
           GQALCTTAAVLGGRSLASQISEKIVALSGG+LFIVFGIQSFLSTVEP
Sbjct: 185 GQALCTTAAVLGGRSLASQISEKIVALSGGILFIVFGIQSFLSTVEP 231

[Close]

BLAST of Carg26879 vs. NCBI nr
Match: XP_022971779.1 (GDT1-like protein 4 [Cucurbita maxima])

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 78
           GQALCTTAAVLGGRSLASQISEKIVALSGG+LFIVFGIQSFLSTVEP
Sbjct: 185 GQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231

[Close]

BLAST of Carg26879 vs. TAIR10
Match: AT1G25520.1 (Uncharacterized protein family (UPF0016))

HSP 1 Score: 73.6 bits (179), Expect = 6.1e-14
Identity = 36/45 (80.00%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 32  QALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           Q LCTTAAV+GG+SLASQISE+IVALSGG+LFI+FGIQS+L++VE
Sbjct: 185 QFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVE 229

[Close]

BLAST of Carg26879 vs. TAIR10
Match: AT1G68650.1 (Uncharacterized protein family (UPF0016))

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-13
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 32  QALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           Q LCTTAAVLGG+SLASQISE+IVALSGG+LFI+FGIQS L+ V+
Sbjct: 183 QTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVD 227

[Close]

BLAST of Carg26879 vs. TAIR10
Match: AT5G36290.1 (Uncharacterized protein family (UPF0016))

HSP 1 Score: 43.9 bits (102), Expect = 5.2e-05
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSF 72
           G  +CT+ AV+GG  LAS+IS++ VA  GG+LF+ F + S+
Sbjct: 248 GHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSY 288

[Close]

BLAST of Carg26879 vs. TAIR10
Match: AT4G13590.1 (Uncharacterized protein family (UPF0016))

HSP 1 Score: 39.7 bits (91), Expect = 9.8e-04
Identity = 19/41 (46.34%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSF 72
           G  + T  A++GG  LA+ ISEK+V   GG LF+VF   +F
Sbjct: 315 GHLVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATF 355

[Close]

BLAST of Carg26879 vs. Swiss-Prot
Match: sp|Q9C6M1|GDT14_ARATH (GDT1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=At1g25520 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 36/45 (80.00%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 32  QALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           Q LCTTAAV+GG+SLASQISE+IVALSGG+LFI+FGIQS+L++VE
Sbjct: 185 QFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVE 229

[Close]

BLAST of Carg26879 vs. Swiss-Prot
Match: sp|Q9SX28|GDT15_ARATH (GDT1-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=At1g68650 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-12
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 32  QALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           Q LCTTAAVLGG+SLASQISE+IVALSGG+LFI+FGIQS L+ V+
Sbjct: 183 QTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVD 227

[Close]

BLAST of Carg26879 vs. Swiss-Prot
Match: sp|B9G125|GDT15_ORYSJ (GDT1-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0433100 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.9e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 32  QALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           QALCTTAAV+GG+SLASQISEK+V LS GVLF++FGI S+LS  E
Sbjct: 185 QALCTTAAVMGGKSLASQISEKMVGLSSGVLFLLFGIMSYLSGPE 229

[Close]

BLAST of Carg26879 vs. Swiss-Prot
Match: sp|A2ZE50|GDT13_ORYSI (GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSF 72
           G  +CT+ AV+GG  LAS+IS++ VA  GGVLF+ F + S+
Sbjct: 234 GHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSY 274

[Close]

BLAST of Carg26879 vs. Swiss-Prot
Match: sp|Q2R4J1|GDT13_ORYSJ (GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSF 72
           G  +CT+ AV+GG  LAS+IS++ VA  GGVLF+ F + S+
Sbjct: 234 GHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSY 274

[Close]

BLAST of Carg26879 vs. TrEMBL
Match: tr|A0A2I4FWF8|A0A2I4FWF8_9ROSI (GDT1-like protein 4 OS=Juglans regia OX=51240 GN=LOC109002607 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           GQALCTTAAVLGGRSLASQISEKIVALSGGVLF+VFGIQSFLSTVE
Sbjct: 185 GQALCTTAAVLGGRSLASQISEKIVALSGGVLFVVFGIQSFLSTVE 230

[Close]

BLAST of Carg26879 vs. TrEMBL
Match: tr|M5XGN1|M5XGN1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G306900 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           GQALCTTAAVLGG+SLASQISEKIVALSGGVLFIVFGIQSFLSTVE
Sbjct: 183 GQALCTTAAVLGGKSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 228

[Close]

BLAST of Carg26879 vs. TrEMBL
Match: tr|A0A1R3J5V0|A0A1R3J5V0_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07457 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 77
           GQALCTTAAVLGG+SLASQISEKIVALSGGVLFIVFGIQSFLSTVE
Sbjct: 171 GQALCTTAAVLGGKSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 216

[Close]

BLAST of Carg26879 vs. TrEMBL
Match: tr|A0A059BGF1|A0A059BGF1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02342 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 42/47 (89.36%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 78
           GQALCTTAAV+GGRSLA+QISEK+VALSGGVLFI+FGIQSFLS+VEP
Sbjct: 184 GQALCTTAAVIGGRSLAAQISEKLVALSGGVLFIIFGIQSFLSSVEP 230

[Close]

BLAST of Carg26879 vs. TrEMBL
Match: tr|A0A059BFD1|A0A059BFD1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02342 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 42/47 (89.36%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31  GQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 78
           GQALCTTAAV+GGRSLA+QISEK+VALSGGVLFI+FGIQSFLS+VEP
Sbjct: 184 GQALCTTAAVIGGRSLAAQISEKLVALSGGVLFIIFGIQSFLSSVEP 230

The following BLAST results are available for this feature:

BLAST of Carg26879 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938546.1	4.6e-15	100.00	GDT1-like protein 4 [Cucurbita moschata]	[more]
XP_022994046.1	4.6e-15	100.00	GDT1-like protein 4 [Cucurbita maxima]	[more]
XP_023551269.1	4.6e-15	100.00	GDT1-like protein 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022964603.1	6.0e-15	97.87	GDT1-like protein 4 [Cucurbita moschata]	[more]
XP_022971779.1	1.0e-14	97.87	GDT1-like protein 4 [Cucurbita maxima]	[more]

BLAST of Carg26879 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25520.1	6.1e-14	80.00	Uncharacterized protein family (UPF0016)	[more]
AT1G68650.1	1.8e-13	80.00	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.1	5.2e-05	48.78	Uncharacterized protein family (UPF0016)	[more]
AT4G13590.1	9.8e-04	46.34	Uncharacterized protein family (UPF0016)	[more]

BLAST of Carg26879 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C6M1\|GDT14_ARATH	1.1e-12	80.00	GDT1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=At1g25520 PE=2 SV=1	[more]
sp\|Q9SX28\|GDT15_ARATH	3.2e-12	80.00	GDT1-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=At1g68650 PE=1 SV=1	[more]
sp\|B9G125\|GDT15_ORYSJ	7.9e-11	75.56	GDT1-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0433100 PE=...	[more]
sp\|A2ZE50\|GDT13_ORYSI	3.2e-04	51.22	GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=...	[more]
sp\|Q2R4J1\|GDT13_ORYSJ	3.2e-04	51.22	GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=...	[more]

BLAST of Carg26879 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4FWF8\|A0A2I4FWF8_9ROSI	3.3e-14	97.83	GDT1-like protein 4 OS=Juglans regia OX=51240 GN=LOC109002607 PE=4 SV=1	[more]
tr\|M5XGN1\|M5XGN1_PRUPE	5.7e-14	97.83	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G306900 PE=4 SV=1	[more]
tr\|A0A1R3J5V0\|A0A1R3J5V0_COCAP	5.7e-14	97.83	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07457 PE=4 ...	[more]
tr\|A0A059BGF1\|A0A059BGF1_EUCGR	7.4e-14	89.36	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02342 PE=4 SV...	[more]
tr\|A0A059BFD1\|A0A059BFD1_EUCGR	7.4e-14	89.36	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02342 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001727	Gdt1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26879-RA	Carg26879-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 31..67 e-value: 4.0E-6 score: 26.9
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 31..74
None	No IPR available	PANTHER	PTHR12608:SF1	TRANSMEMBRANE PROTEIN 165	coord: 31..74

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26879	Bottle gourd (USVL1VR-Ls)	carlsiB867
Carg26879	Melon (DHL92) v3.5.1	carmeB0932
Carg26879	Melon (DHL92) v3.6.1	carmedB0938
Carg26879	Watermelon (Charleston Gray)	carwcgB0927
Carg26879	Watermelon (97103) v1	carwmB0952
Carg26879	Watermelon (97103) v2	carwmbB1001
Carg26879	Wax gourd	carwgoB1103
Carg26879	Cucurbita maxima (Rimu)	carcmaB1301
Carg26879	Cucurbita maxima (Rimu)	carcmaB1302
Carg26879	Cucumber (Gy14) v2	carcgybB0938
Carg26879	Cucumber (Gy14) v1	carcgyB1070
Carg26879	Cucurbita moschata (Rifu)	carcmoB1271
Carg26879	Cucurbita moschata (Rifu)	carcmoB1272
Carg26879	Cucurbita pepo (Zucchini)	carcpeB1316
Carg26879	Cucurbita pepo (Zucchini)	carcpeB1317
Carg26879	Wild cucumber (PI 183967)	carcpiB0988
Carg26879	Cucumber (Chinese Long) v2	carcuB0966
Carg26879	Cucumber (Chinese Long) v3	carcucB0994