Carg26838 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26838
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Integrator complex subunit 11 homolog
Location	Cucurbita_argyrosperma_scaffold_277 : 82617 .. 95185 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACACGTCGCTCGCCGCTCGCAGAGCACTCGCCTGGTGGCTACCCTCCCTCTGCCTCTTCAATCTTCACTCGGCTCTTTTTCCCTTACGGTCGCTGTCGCCTCTCTTAGCTCAGTGCCGCAGTCGCCGTTTTTCTCCACTCGTACTGCTGACGTCTTTTTATGCGCTGGCCTCCTGGTCTCTCTTCGCTCGGGTGAGTCTGGCATTGTGTAGAAGTTTATCTGAGTTGAAGGACTACTGCAATGACCATCGATTGTCTCGTTCTTGGTAATCCCTTAGCTTTTTCTTATGTATTCTTTATCCAATTACGGTTTCCAACGTTGATTTTAGTCTTTATCGTCTTTTAGGCGCTGGGCAAGAAGTTGGGAAGAGTTGTGTGGTCGTCACAATCAATGGAAAGCGAATTATGTTTGATTGCGGCATGCATATGGGCTATCTCGATCATCGTCGATATCCTGATTTCTCTCGCATCTCTGCATCTCGCGATTACAATACTGTTCTTTCCTGTGTCATCATCACACATTTGTATGATTTTTTTCTTTTTTTGTTGTAGTAATCGATACATCTCTGTTACATTACATTACATTACAATTCTTTGTTTTTATTTGTCTTTTCTTTGCAATTTTGCAGTCACCTGGACCATATAGGTGCTCTTCCATACTTCACCGAAGTTTGTGGCTATAATGGACCCATTTACATGACGGTACATATCATCTAATACACATGCGCATAGATGTTTGTCCTTTTGGTTTCACCGTGGCCATGTTAGATTGTTTTTTGCATATAAAATGTTGTATGAAGTCACCCAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAAACACACGGATTATGGTTGGAGAATTCATGTGTAGCTTTCTTTCCTAGACCTAAATTCAGAGGTACAAAAAAACTTTGGAAGAAGAAGAGCTCACACAAAGTATGGTTGGAAAAATTTGAATCCATGTATAGCTTGCTTCCTTTGGCTTCGGTGCTGCCTTCTTTAGACCCTTCTTCTTTGCTTTCTTTAGGTTTCCAGCGTCCTCTCTCTGATAGAGTGGCGTTGGGAGTGGTAGGCCTTCTTTCTCTCTTTCAGGACGAGCATGTAATTCTAGGGAGTAGGGATGTTTGGATTTGGTCCCTTGATCCTTCTAAGGGCTTCACTTATCATTCTTTTTTCTCCTCTCTCTCTGAAAGGTTTATATTCCAAGGAAGGTTGAGTTGTTTGTGTGGCAGGTTTTACATGGGTGAGTTAATACCATGGATCGCATGCAAAGACTCTGTTCTTATGTTTTATTCTCGCAATTGTGTATTCTCGGTGGGCATGAAGTAGACCTGGATCATTTTTCTTGGAATTTCCAATGTTCTGACCACCTTTGGAGCATTGGTCGAGTGCGATTGCTGTTTGTCTCAGGTGGAGGAGGTGCTTTTGAGTTCTACTTTTAGGGAGAAGGGTAAAGTTTTTTTGACATGCTAGCTTCTTTGCTAGTTTTGAGTCTTTTGGATTGGGGGGAACAATGGAACTTTAAGAGAGGTGGAGAGGTCGGGTGAGGGTGTTTGGGAGGTGTCTAGGTTTAATGCATCATTGTGGGCGTCAGTCACTAGATCTTTTTGTAATTATGAGCTTGACATTGTTTTTTTTTGGCTTTTTGGAATTATGAGCTTGGTATTGTTTTTTTAGATTGATGTAATTTTCTATAGTTACCCTTTTTTGTGTGCCCTTGTATGTTCTTTCATCTCTCTAGGAAAGCGTGATTTGTTACCAAAAAAAAAAAAACTTTAAGACTCTTTAGTCCTATAATGAAGTTTATTGTCAATTTTGTTTTCTTACACGTTGATATGGGCATTGAAGCTCTCTTTACTTACCTTTGGCCACAGTATCCAACATTGGCATTGGCTCCTTTAATGTTGGAGGACTACCGGAAAGTGATGGTTGACCGAAGGGGTGAAGCAGAGCAATTTAGTAATGATCATATTATGGAGTGCATGAAAAAAGGTAACTGAATTATGTCAAGTTCATAAGTAGTATGCAACTAGTCTCTCTTGGTTGGAAATGTGATTGTTTAGGTGACCAAAGTATAAGCATTATCTCTATTTTTTAAAACGGATGAAGCATCAAAGTGCTGTGATCCATTAGGAGGATGTTACACACGTCCATGTTGCTTATCTCTCATACAATGTAGATATTACAACTATGTTGTGATAATTACTTTGTTTCCTTCCTTTTCCCATCCAATTTTGTGGGGTTCTAGGTGAACCTTCCCTTTTTTAACCCAGTGCCTTCACCAATGCCTTAGATACTATGTTCTCACAACTTTTTCCATCAATGATATTGTTACACACGTCATTACGTTGTATAGTTAGCTCTCTTTAGGGGTATGATTTATGTTCTTGGTTTACTTGACCGTGCTTTGTACCTTTTGTCTGATTCCAAATACTTTTGGATTTGGACATCTTGTGTACCTCTTATTTTTCATTTATCTCTATATTAAATGAAACTTGTTCCTTTTTTTTTTGCTTGTTTTCGTTCTACCTTACAAACACAGTGTAGAAGGAGAAACCTTTGACTGAATATGGAAAACTGCTATTTTATGAGATCCTTACCCTTCGTGTTTAACTAATTGTTCATCATTTGTGTTTGTACCCTTTTGCTTCATTTGATGATTGTTCTTGCTCAGATTGCGTTTTAGACTGCACTATTGATAGTTGTGTATGGCTTAACAATTAAGCTTCTGTGGGTACCTCTTATTTTTTTATTCATGTATTTGATGTACATCAATTGCTGTTCCATTATTTTCTTCAGTATATTAAGATTATCTGTCATTGATCTTGATTCACCTGCAGTTATACCTGTGGATTTGAAGCAGACTATACAGGTTGATGAAGATCTTCAAATTCGTGCTTACTATGCTGGACATGTAAGGCCTCGTTGATATATTTAGTATTCTTATTTTGCATCTCCTAGTATAGCTTTATTTAAAGCTGGCTGACAATCTTCCTCATCGGTGGTAGACATGTCCTATGTATTGTTGCTTAATTTCATCCTTGTTTCATTATTCAACTTGACTTTCATAACGTTATTAAGCTTCTCTCTCTCACTCTTTGTGTTTACGCAACAATATGTGCACTTATGTAAATGCTATAACAGTAATGATAGCAACCTTTATATTAAATTAGGTTGTTGGGGATTTTGTAACCTCCCTAGTCCTCTGGCCTTTAAACTGCATACACTGATTGGTTTTAATTCATCTCCTCCATATTAAAAGAAAGAAAGAAAGAAAGAATTGCAATGCACGAGCCTTGAAATTCTCCTGTATTTTCAATTTGAAACTTTTCGATGATGATATTATTTTTATTTTTCTCTGCTAATTTCCTCTTTTTTTGGTTTATTGTTTCCCCTCTAGTTTTTTTTTTTAAATACTTTTTCAGTCGGTAGGCAGATCTGGAAACTCAATGAACTCTTCCAAATAGAAAAAATTACATAATTCTGAAGTCTGTGCATTCTCTGGAATTCTATTTAGTTTCCTTAGAATATTTTTGTAGGTGAACGTGAATGCGCATGTTGGACATAGGGTATTCATTTCACAAAAAGTTAATAGACGTAAATGAGAGGGGTAACTTTGCTAAGGATGTATAGTAGTTTGAGTTTGACATATTGATATACCTAATTCTATCTGATGTGTCAAACTAATGGTAGTTTGAACGAAAAATTGTAACTTATTACTTGTATGTGCTTTTTAAATGGAATTTCTTTTGTATCGTATATGGGCATGCATGAATCCAGTAATTAGTTGCTTGCTGTGTGTATGCATCTATTTATCAATCTACTATTTTGCAAATTGTGGAACCCCAAATTGTGTCGTACCTTTATTCCCAGTTTAAATATAATCCACAAGCAACTTATGCTTGAATTATCGCCCAGAGTTGTGAACTTAGTTCTTAATATTGCTACGTCATTGTGCCTACTGTTTGTGCTTACTTGACTTATTCTCAAAGCTTTTTCTTGTTGCTTCCACGAACTTTGTCCATCAAACAACTGTAATGTGGAATGTGCATATTTATATTTTAATCATGTTCTTAAGGTTTTAGGAGCTGCCATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACACCTTGGAGCAGCTCAAATTGATCGAATGCAGTTAGACCTTCTTATAACAGAGTAAGAAGTTCAAAGAACTATTTTACTTGTTATAGTGTTGGTTGTGCACCCTTTTAATCTTCAGCTATGAAAACAATTTCTTCCAACCCTTGATTTCTCTCTGTAAGGGGAAAGTTGTATCGTAACATTGAATCCATCATATTTGGCAATGGTTTCAATTTTTTGATCTTCTAAGCATAACTTAACTAGTTAAGATATTATATATCTATTTGGTTCGAATATCCACTCTCACGTTGTTGAACTCAGAAAATAGGGCAAAAGAACCTTTTGTACTTAAAAGAGAACATGGGTAATGATAATTTTAAATAATCCCTTAAGCACATAAAAAACAAGGAGTTAAATGACCCTTAAAGAAAGAAGCATATTGTAATAAAATCATACACCTATGATTTATTTGCATGCTGTACATGAAAAAGAATGACGCACATAATGAAGCAACATCAAATGGGTTGAGATTGGACTTAAAATAAATGGGTTTTTATACTCCCATTATGTTGGGTTGTAAATGTATATTAAACTCAACTGGTCCTGATGTAGTCCATATCTCAAGGGCTGAATTTTTTTATTTTATTTTATTTTATTTTACTTCTAGGCTTTTGTTTGTATTTTGTCAATGAATGGTTTAGTTAGTAGTTAATTGGGCATTAGTTTGACGGTTCACAGAGTATTTTGAAGAACTAGCCGTTGCTTGTAGATTGTTTGTTAGATTTATAGCTGTTGGGGCTTGACTTGTAGAACTAAATTCTAGTTCCTTTTTTTCTTAAGTTGTCAACAAAAAGATGAAGATTTTTTTTCTATTTGCTTATGGTCTTCTAGTTAAACATAGGAGAGTTTTCTGTTCCTGATGCCTTTTCATCCGTAATTCAGCATGTGTATTCACTGCAAAGTATTTCTATTTTTAATCTTCCAATGTTTGTCTTCCGCAGGTCTACATATGCAACAACAATCCGTGATTCCAAATACGGCCGTGAGAGAGAATTTCTTAAAGCTGTATGTATAAATTAATTTATTAAAATCATTAACCCAGATTTGCCTTTTCTGCACCTCTTTATATTTTTAATTATAAATCTGATATGTTTGTTTTTCATTCATTGTCATGCATACTGACCTAATAGTAATTCAGGAGCCAGGACATAATTAAAGTTTAGCGAAGTTGTTCATGTTCTAATACCAACTTGGCATATTGTTTGAATGAAATATTATCTGTCTCTCGTTTGAAGATTGCAAAATCTTCTATTCTGTTGTAGGTTTTATTTTGTGATGTTTCAGGACTGTAGGTTGGTTGATCCCTATACTGTGTTTATAGGTTATTACAACTTTTCAGATGATAATTTGTACAGGGTATTGCATGTGAGAATTGTAGCATCATAGTTTAGGACCCATGATATAAGATATAAACTGGTGATGAATGGCTATTGGGCATTGATTAGTGACCTAAACCCATCATAAACTCTTTAAGTTCCTTAATAGACACTGAATTATTTTATCTTAAAAAAGTTCATAACGTTTAGCCATGAAAATGATTTGAAACAAGATATTTTTCCCGGATGATTTGGTATAGGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGTACTTTGCTAAATATTGTGTAGCTTTAAATCTTTATCTGCAAGCTGCATCTTTCATGACTAATTCATGTTATGTAATACTGTTACAGTTATAAAATTTTCCATTATGAGCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAAGATTCCAATCTACTTTTCAGCAGGTCTCCTTTGAATAATAAGTTCTCATTTCATCCTTATACTAGTAGATATGTATTAATACATCTTAGGCAACTCTTCAGCTTCCAGTTTCCTTTTCATGATTTCCAACTGCCTTGTAAGTCCATGATCTGCTTTGATAATCTTCTGCCCACAATTTGCTGATAAAGTTGAGATGCATGTTAGGCATTTATCGAGAACTGCAATTGCCGAGTTGCTATGAGTGATTATTGAGTGTTAGGGCGATTAGAGCATTTCGTGGTGGGCTAATCCTTCTATTTGTCTCACAATTAATGGTGAGCATGGGTGATGAATTTATGTAGTAATTGAACTAGATTCAAGCTTGAGATACACTTGGTTGGTGAGTCCAAGCCATCTTTCAATGAGCAATGTGTTTCAAATCTTTATAAGCATTAAGCACTAATCAACTTGTCTGGATTATTCGAGTTGGCGATCTTTTTTCTTCTATAGATGAGGCATGTGGTGAGAGGAAGACCAGGCTGAATCAGATTTCAGCATCATCTCATAGACCACCGTGAGAAAGAGTTGATAATGATAGCTACTAAATACGTTTCTTTAAAGTTGTTAGGAATTGCTTTGTTTCATATACAGTTCTTCTCACTCTGTTGTTTCCTATAAGTATTGCTTTTCTCGACTTTTATGTTCTTGTGTTCATTTTTCTGCTTTCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACCAGCCAGAAGGTTAAGGAGACATACACGACAAGGAATGCTTTTGACTTTAAGAATGGTATGTCATTCACATGTTTCATGTTTTCAGGATTGGAATCAATTGATGAAACTGCCATAAAATAAATGTTATTATGTTGAGCATATTTGCTTACCCGGGAAGTGATGTGGGTACCCCTTTCAAAGTGGCCGCCTAGGTGGGGACATTTATCTGAGTATTGAGGCATCTTACCTGAACAATGAATAAAACGAGAGGACATTTAAATTGGAAGTAGAGATGTCCATAGGGCGGGGGTCTTGGCCCCCGTCCCCGCCTCCTATTTTATTTCCCATTCTCGCAAAATTTTTATTTATTTTTGCGGGCATTGGGACAGGGATTCCTTGAGGGGGGAAATTTTCCCCATTTTTTATATATATTGTTTTTAAAAATATCCATCTCAAAGAATTTTTTAATGGATAATTTTCATTTTCCAACATAATTTATATTAAAAAATGTAAAACATCATAATAAATCCAATAATATTTCTTAGGCAAGATAATAATATAATGTTTAGGCAAGATAATAATATAATGTTTAACATAATTTCAATATTACAACATAGTCTTTTACACTTTAATGAATAAATATATATATACAAAGTGAGATGGGGCGGGAATTTGGGCGAGGTCGGGGGTGGGGAATATAATTCCCATCTCTGGCCCCGTTTAACTAACAAGAAAACTTCTCTCCACTTCCTCTCCCACTTTCGGGTTAAATGAACCTCTCTAATGGGAAGAGATTGTTATGTCAAACTTACTTTTTCCATGACCCAAATCACTCATTTTAAAATAATTATATTTGACAATAATGTAGAGGTTATTTTGAAAAAATCCAAACTCACTCTTATGTGATTCTAGAAGTTGTAGATAGGAGGTGATTTTGGTGGGTGATTGACTAGGAATCAGTTACAGGTATAATGGCTTTAGAAATCTGAAGTGATTTATTATTAAATGCCTTTTATAACATCACTTATAATTAAATCATGGTAACACTTATTCTAAAGTCACTTTTAACCACATAGCATGTGTCATATTTTAACCACTGACAAACTTGCGTTACATTTTGCAGTTCAAAAGTTTCGACCGTTCTATGATTGATGCTCCTGGGCCTTGTGTTCTTTTTGCTACACCAGGGATGATTAGTGGTGGGTTTTCTCTTGAGGTTTTTAAGCGCTGGGCACCTTCTAAGTTGAATCTTATCACATTGCCCGGGTATTGACTATGGCTACTCTCTTTTGGCTATCGCTTTTGTGTTCATTATTCAAGTGTACTTTTGCAGGATGGTTCTTTGACAAACCATAAAGTTGTCCAACTTCTGTGACTGAGCTTTTTCTTTCACTTTTGAAGCTCTTTTCTTTTTTCTTTCTTTCTTTCTTTTTTCTTAAATAATTATTCCAATTTTTGCTTATGTTCATAGTTTGTGTTTGGTCATGTTATGGTCTTTACTACATCCAAGCATAATGTGATTTTGAAATTGCTATCTGAAAGCCATATTGCTTTATCCCATGTAGGTATTGCGTGGCCGGAACTATTGGGCACAAGTTAATGTCAGGAAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTGCAATGCCAGGCTAGTATCTATCAGCTTTACGTTGTTGTGTTTTCCTTTTTGAATATGATTTTTAGAATCATTAATCCTTAGTTTCACTAGGCCTGAATTACATCTCGATTTGGATTTTAATGTTTCTTAGAGGTTCACTACTCGGTAGCTTTGGTTGATAGCCTTTTTAGACTGTTGTTTACCTTAGGGGAAACTAGGAATATAAAACAAACTTATAATGCATGGTGCCATGTGTCGCAATCCGCGATGAGATTGTGCTTTGAGAAAGTCGTTGAGAACGATGACTAATTTAAGTGGTGAAGAATGTCACAACCATAATATGAAGAAAGTAGGTTGTGACTCTCATGTGCAAACAAGACAAGGTGGCGACACGGTAGGGGTGCCCGAGTAGCCATGGAGGGTCAAGACAAGACGAGTACCATGATGCGACCGAGGAGGACGGTGCATCATCTAACACACCACAAAGATGTGCATGAAAGATAAGCCAAGGCATAGGCAAGATAGAGACAACGATGTGACATGAGCATTAGAGATAGACTTGTTGAAGGGTTGGGCAAGGCGCCAGGCCTTAACCTTGAAAGTCAAGGTTTCGAAGGGAACTTGGACATGCGGTTATGGAGTCAAGTCTGTCCATATGAAATATGAAAGCTTGCCCAATTTGGTGTCAATCCACTCAACATCGTATGCCCGTTTGCCAAAATCATTTCTACACTCGCAAGATTGAAAATGCCTCAAAATATACTATAGGAGGAGATATGGTGTTAGCTCTCCACCACCTCTAAGCCATGTGGCTTAAGCGAGCTACCTTGTTGACATATACGTATGTCACAGTGAGAGCGATCATTGCAAGACTAGTGTCTCGGACGACTTCCTTTGAAATAGATTTTTTTCAAGGACAATGTTAGGCGGTACAAATGTGCCAACATTGTGTCCCAGCCCATGTGTCAGAGGTTGGTCAGATACCCGCTATTCGGTACAGAGTTTGTAAGTGATATAACATGGACACAGGAGGTTTAATGGAGGAAGGTCGAGTTAAGTGACTTGGCCTAGTGTAGAGGCAAATCAGTTGGGTCGTAGATGATTGAACATGCACGCGCAAGCGGCGTGCATGGTCGAACAAGCTTGGATTCCGCAACTTGGTGTTCGGTGGGTAAAGACAAACCTTGCCTAAGGTTTGATGAAGCCACAAAGCCACACAAAAAAATGAATATGGGGCTTGAGTCTTATCAAGGTTGGTCGTGAGCTTGTCAAGATCATGGCGCCGCATGGCTGAAAAAGTACGACCATGATAGTTGGTATCACAGCCACACTTTGTGTTTTTAATTGGACAAAATTGTCAGGAAGAACCTGAGGGTCGAATGAAGGCATCACAAGCGTGTCAAAAGTGTCATCGATGGAGCAATTGTGTTGTCATGGATCAGAAACAAGATGTGGGTTGAAGCCAAGACTCCCCTAAGTCACTAGTGTCGTGTGTTGACACCTCAGTAGGGGGGGTTCTGCCCGTCAAAAAGCTACTCAAAGCTCATTTGCCAAAGCTTGAGGTTCCAATCGGGCCGACAGATGAAAAAGAAGGTGTACCAAGTCGGTGCTTTCCAAAGAGTCACATGAAGAGGCAGCCGAGTTTGAGTGGGGAGGGCCCGAGAGAATGGGTTGCTTATCCAATGTGAGTGCTCCAAGAAGCAAGCACAAGTGAATTCTTTGAGTCATCCCCTCTGAGAGGCGGGTGATTTCACAATAGATGTCAAGACCAGCATTTGCTCGAGAAGGAGCACTAGGCTGGATATGAAGGCAACAGAAGAATGAAGTTGTGGGAAGACCGAGAGAAGCGAAAGTGGCCAAGAAAGGAGTTGGCTAAAGTGTAGTGCCAACAACTTAAAGGATTGTGTCAAAAAGCATTGACTTTGCCTCAATGAGGGATGTGGTCAGGACGAGAAAATATTGTGGTTGGGCTTGCAAGCCCCACCCTGAGGGGTGCACCAATTTATGTGACTCAGAGAAACGCAAGTTGAGGCAAAAGTGGCCATGATTGGGGCAAATGCCCTTTAGTGGATTGGTGAGTGTCCCTGGCGGAGTTCGAAGGTAAGGCATCGTAAGCCCAACTTCACCCATGCCATGGCAAAGAAAGCCCATATTTTGTCTGGTGAGTGTCCCTGACCAAGCCGAAGATAGATGTCATAAGAGCCAGCTATGCCAATATTGAATTGCAGTGTCTATGTTGCGAGTCTCGTGGCTAAGTCCTAGATGGGAGAAAAAAAGAATAGGTCTGAAAGTGGGGTAGCCCATAGATAGTGTGCACAAGATTTTCGTATTCGTTTTGAAGCACATTTATTTCCAGCAAGTCAGTTAGCAAGCAGTCTAGACCCCGCTACCCCGCTACCACAAAGAGATATTTAGTGAATTTGTACTCATTTGTACTCATTTGAAGCATGATCTGTTCTAGCGGGTCAAGTCAACAACCAGTCCAAAGTGGGGAGAGAATGTCACAATCCGCGATGGGATTGTGCCCCTAGAAAGTCATCAAAGACGATGACTAATTTAAGTGAGGGAGTGTCACGACCATACTAAGAAGAAAGTAGGTTGTGACCCTCACGTGCAAACAAGACAAGGTCGGGACACGATAATGGCGCCCGATTGGCCACGCGTGGGCCGAGACAAGATGAGTGCCATGATGCAACCGAGGAGGACGGTCCATCATCTAGCACACCATAAAGATGTGCATGAAAGATAAGTTGAGGCAACGATGTCAACATGAGCATCAGAGATAGGCTTGTTGAAGGGTTGGGTAGGACTTGGGCCTTAACCTTGAATGATCTTTGAAGGGAATTTTTACATGTAGTTCTGGAGTTGACTCCGTCTATGTGAAAGCTCACCAAAGTTGGTGTTAATCCAACGAACAGATGCTCCACGACATCATATGCTTGTTCGCCAAAACTATGTCTACACCAGCCAGATTGAAAATGTCTCAAAATGTACTACTGTAGGGGAAGATATGGTGTCGGCTTTCCAAACCCAGGTTCTTTGGATGCATCTTGTTTGGGCTTTCCTGTGGACAATTGCCTCTTTGATGAAAAGGGGAGCACTTCACTGTAAATCCAGAAACATTACTGGTACTTTGAGTTCAAAACGAAACATACGCAAATGGACACCGTTAAAGTTTACCTGGATGAACTTCTGTTTTCCTTTTATTGTGTATACATATATATATAAATTTTTAGTCCTGTAATCATTCTATTAAATGTTCCTGGCTATATATAACTATGTTTCATCCCAGATTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATCATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGTTACTTTAAAGGAGAGGATTCATTCAGAACTGGGAATCCCATGTCATGATCCTGCAAATAACGAGACTGTATCCATTTCTTCAACTCTTTCTATCAAAGCAGAATCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCCAATTTCAAATTTTTGAAAAGAAACTTGAATGATAAGATTAATTCAAAAGAGTTAAGTTCGAAAGAAGGAGGAACTTCAAGCATGTTCTTCCGCAGACGCTCGAATCCCCATGTCAAGCATTTGAATAGAAATCTTGACGAAAAGTTTGATTCTAGTTTGAGTTGTGGTCCAGAGCTAGAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAACGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTACTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTGTAGTCCTATATATTTTGGAAGCTTAGATGATACCCATGTCATGGATTGCATATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCGAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGATGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

mRNA sequence

CAACACGTCGCTCGCCGCTCGCAGAGCACTCGCCTGGTGGCTACCCTCCCTCTGCCTCTTCAATCTTCACTCGGCTCTTTTTCCCTTACGGTCGCTGTCGCCTCTCTTAGCTCAGTGCCGCAGTCGCCGTTTTTCTCCACTCGTACTGCTGACGTCTTTTTATGCGCTGGCCTCCTGGTCTCTCTTCGCTCGGGTGAGTCTGGCATTGTGTAGAAGTTTATCTGAGTTGAAGGACTACTGCAATGACCATCGATTGTCTCGTTCTTGGCGCTGGGCAAGAAGTTGGGAAGAGTTGTGTGGTCGTCACAATCAATGGAAAGCGAATTATGTTTGATTGCGGCATGCATATGGGCTATCTCGATCATCGTCGATATCCTGATTTCTCTCGCATCTCTGCATCTCGCGATTACAATACTGTTCTTTCCTGTGTCATCATCACACATTTTCACCTGGACCATATAGGTGCTCTTCCATACTTCACCGAAGTTTGTGGCTATAATGGACCCATTTACATGACGTATCCAACATTGGCATTGGCTCCTTTAATGTTGGAGGACTACCGGAAAGTGATGGTTGACCGAAGGGGTGAAGCAGAGCAATTTAGTAATGATCATATTATGGAGTGCATGAAAAAAGTTATACCTGTGGATTTGAAGCAGACTATACAGGTTGATGAAGATCTTCAAATTCGTGCTTACTATGCTGGACATGTTTTAGGAGCTGCCATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACACCTTGGAGCAGCTCAAATTGATCGAATGCAGTTAGACCTTCTTATAACAGAGTCTACATATGCAACAACAATCCGTGATTCCAAATACGGCCGTGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAAGATTCCAATCTACTTTTCAGCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACCAGCCAGAAGTTCAAAAGTTTCGACCGTTCTATGATTGATGCTCCTGGGCCTTGTGTTCTTTTTGCTACACCAGGGATGATTAGTGGTGGGTTTTCTCTTGAGGTTTTTAAGCGCTGGGCACCTTCTAAGTTGAATCTTATCACATTGCCCGGGTATTGCGTGGCCGGAACTATTGGGCACAAGTTAATGTCAGGAAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTGCAATGCCAGGCTAGTATCTATCAGCTTTACATTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATCATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGTTACTTTAAAGGAGAGGATTCATTCAGAACTGGGAATCCCATGTCATGATCCTGCAAATAACGAGACTGTATCCATTTCTTCAACTCTTTCTATCAAAGCAGAATCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCCAATTTCAAATTTTTGAAAAGAAACTTGAATGATAAGATTAATTCAAAAGAGTTAAGTTCGAAAGAAGGAGGAACTTCAAGCATGTTCTTCCGCAGACGCTCGAATCCCCATGTCAAGCATTTGAATAGAAATCTTGACGAAAAGTTTGATTCTAGTTTGAGTTGTGGTCCAGAGCTAGAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAACGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTACTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTGTAGTCCTATATATTTTGGAAGCTTAGATGATACCCATGTCATGGATTGCATATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCGAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGATGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

Coding sequence (CDS)

ATGACCATCGATTGTCTCGTTCTTGGCGCTGGGCAAGAAGTTGGGAAGAGTTGTGTGGTCGTCACAATCAATGGAAAGCGAATTATGTTTGATTGCGGCATGCATATGGGCTATCTCGATCATCGTCGATATCCTGATTTCTCTCGCATCTCTGCATCTCGCGATTACAATACTGTTCTTTCCTGTGTCATCATCACACATTTTCACCTGGACCATATAGGTGCTCTTCCATACTTCACCGAAGTTTGTGGCTATAATGGACCCATTTACATGACGTATCCAACATTGGCATTGGCTCCTTTAATGTTGGAGGACTACCGGAAAGTGATGGTTGACCGAAGGGGTGAAGCAGAGCAATTTAGTAATGATCATATTATGGAGTGCATGAAAAAAGTTATACCTGTGGATTTGAAGCAGACTATACAGGTTGATGAAGATCTTCAAATTCGTGCTTACTATGCTGGACATGTTTTAGGAGCTGCCATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACACCTTGGAGCAGCTCAAATTGATCGAATGCAGTTAGACCTTCTTATAACAGAGTCTACATATGCAACAACAATCCGTGATTCCAAATACGGCCGTGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAAGATTCCAATCTACTTTTCAGCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACCAGCCAGAAGTTCAAAAGTTTCGACCGTTCTATGATTGATGCTCCTGGGCCTTGTGTTCTTTTTGCTACACCAGGGATGATTAGTGGTGGGTTTTCTCTTGAGGTTTTTAAGCGCTGGGCACCTTCTAAGTTGAATCTTATCACATTGCCCGGGTATTGCGTGGCCGGAACTATTGGGCACAAGTTAATGTCAGGAAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTGCAATGCCAGGCTAGTATCTATCAGCTTTACATTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATCATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGTTACTTTAAAGGAGAGGATTCATTCAGAACTGGGAATCCCATGTCATGATCCTGCAAATAACGAGACTGTATCCATTTCTTCAACTCTTTCTATCAAAGCAGAATCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCCAATTTCAAATTTTTGAAAAGAAACTTGAATGATAAGATTAATTCAAAAGAGTTAAGTTCGAAAGAAGGAGGAACTTCAAGCATGTTCTTCCGCAGACGCTCGAATCCCCATGTCAAGCATTTGAATAGAAATCTTGACGAAAAGTTTGATTCTAGTTTGAGTTGTGGTCCAGAGCTAGAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAACGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTACTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTGTAGTCCTATATATTTTGGAAGCTTAGATGATACCCATGTCATGGATTGCATATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCGAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGATGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

Protein sequence

MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFKSFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLKRNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVADEVLAWQIISILEKHDLSST

Homology

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_022944195.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbita moschata])

HSP 1 Score: 1238.8 bits (3204), Expect = 0.0e+00
Identity = 659/683 (96.49%), Postives = 659/683 (96.49%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
           RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV
Sbjct: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW
Sbjct: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LVADEVLAWQIISILEKHDLSST
Sbjct: 661 LVADEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_022986472.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbita maxima])

HSP 1 Score: 1230.3 bits (3182), Expect = 0.0e+00
Identity = 653/683 (95.61%), Postives = 655/683 (95.90%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMT+PT+ALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTFPTMALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSS FIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSTFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
           RNLNDKIN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV
Sbjct: 481 RNLNDKINSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVME GKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW
Sbjct: 541 NEGILVMEKGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LV DEVLAWQIISILEKHDLSST
Sbjct: 661 LVTDEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_023513382.1 (cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1228.4 bits (3177), Expect = 0.0e+00
Identity = 654/683 (95.75%), Postives = 656/683 (96.05%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSS FIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSTFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
           RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPE+EVSDDRV
Sbjct: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPEIEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVME GKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHV+ CISRKSLW
Sbjct: 541 NEGILVMEKGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVIVCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LVADEVLAWQIISILEKHDLSST
Sbjct: 661 LVADEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_008459147.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Cucumis melo])

HSP 1 Score: 1156.0 bits (2989), Expect = 0.0e+00
Identity = 603/686 (87.90%), Postives = 628/686 (91.55%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISASRDYN  L
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFHLDHIGALPYFTE+CGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF
Sbjct: 61  SCIIITHFHLDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +NDHIMEC+KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELC+LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       +HQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------VHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLSIKAE+SSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKI--NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDD 540
           RNL DKI  +         XXXXXXXXXXXXXXXXXXXXXXXXXXXXX SCGPEL+VSDD
Sbjct: 481 RNLIDKIDPDLKDLSYKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCGPELQVSDD 540

Query: 541 RVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKS 600
           RVNEGILVMENGKKTK +HQDELLLLLGEQEHEVRFA+C PIYFGSLD+ HVMD +SRKS
Sbjct: 541 RVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKS 600

Query: 601 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYC 660
           LWLSQLS KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRTTNRIENES+A  F C
Sbjct: 601 LWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESSAMVFCC 660

Query: 661 CSWLVADEVLAWQIISILEKHDLSST 669
           CSWLVADE+LAW+IISILEKHDL ST
Sbjct: 661 CSWLVADEILAWKIISILEKHDLGST 679

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_011650067.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis sativus] >KGN63379.1 hypothetical protein Csa_2G435430 [Cucumis sativus])

HSP 1 Score: 1140.9 bits (2950), Expect = 0.0e+00
Identity = 590/684 (86.26%), Postives = 617/684 (90.20%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISAS DYN VL
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFHLDHIGALPYFTEVCGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF
Sbjct: 61  SCIIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +NDHIMEC+KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELC+LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDK TQIDVQCQ       +HQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKVTQIDVQCQ-------VHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLS+KAE+SSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
           RNL D  +         XXXXXXXXXXXXXXXXXXXXXXX      LSCGP L+VSDDRV
Sbjct: 481 RNLIDP-DLKDLSYKAEXXXXXXXXXXXXXXXXXXXXXXXAKFDSSLSCGPALQVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVMENGKKTK +HQDELLLLLG+QEHEVRFA+C PIYFGSLD+ HVMD +SRKSLW
Sbjct: 541 NEGILVMENGKKTKALHQDELLLLLGQQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYCCS 660
           LSQLS KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRT +RI+NES A  F CCS
Sbjct: 601 LSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTIDRIKNESTAMVFCCCS 660

Query: 661 WLVADEVLAWQIISILEKHDLSST 669
           WLVADE+LAW+IISILEKHDL ST
Sbjct: 661 WLVADEILAWKIISILEKHDLGST 676

[Close]

BLAST of Carg26838 vs. TAIR10
Match: AT2G01730.1 (cleavage and polyadenylation specificity factor 73 kDa subunit-II)

HSP 1 Score: 817.8 bits (2111), Expect = 5.0e-237
Identity = 409/676 (60.50%), Postives = 486/676 (71.89%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHMG  DH RYP+FS IS S D++  +
Sbjct: 1   MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFH+DH+GALPYFTEVCGYNGPIYM+YPT AL+PLMLEDYR+VMVDRRGE E F
Sbjct: 61  SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +  HI  CMKKVI +DLKQTIQVDEDLQIRAYYAGHVLGA M YAK+GDAA+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           T DRHLGAA+IDR+QLDLLI+ESTYATTIR SKY REREFL+AVH CVA GGK LIP+FA
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQ------------- 300
           LGRAQELC+LLDDYWERMN+K+PIYFS+GLT+QANMYYKMLISWTSQ             
Sbjct: 241 LGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFD 300

Query: 301 --KFKSFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
               K FDRS+I APGPCVLFATPGM+  GFSLEVFK WAPS LNL+ LPGY VAGT+GH
Sbjct: 301 FKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLM+GKPT +DL   T++DV+C+       +HQ+AFSPHTD+KGIMDL KFLSPK+V+LV
Sbjct: 361 KLMAGKPTTVDLYNGTKVDVRCK-------VHQVAFSPHTDAKGIMDLTKFLSPKNVVLV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKP M+ LKE+I SEL IPC  PAN ETVS +ST  IKA +S MF++SCS PNFKF  
Sbjct: 421 HGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKF-- 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
                                                          S   +L V+D R 
Sbjct: 481 -----------------------------------------------SNSTQLRVTDHRT 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
            +G+LV+E  KK K+VHQDE+  +L E+ H V  A+C P+      +   +D I      
Sbjct: 541 ADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKGESEDDDVDLI------ 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
             QLS+K+   +S   +      LQV SF  S+C K+ C +R+++   + S A F CC+W
Sbjct: 601 -KQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSS---SSSEAVFLCCNW 610

Query: 661 LVADEVLAWQIISILE 662
            +AD  L W+II+ ++
Sbjct: 661 SIADLELGWEIINAIK 610

[Close]

BLAST of Carg26838 vs. TAIR10
Match: AT1G61010.1 (cleavage and polyadenylation specificity factor 73-I)

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-76
Identity = 159/433 (36.72%), Postives = 234/433 (54.04%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAG EVG+SCV ++  GK I+FDCG+H  Y      P F  I  S      +  ++ITH
Sbjct: 27  LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSS-----IDVLLITH 86

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FH+DH  +LPYF E   +NG ++MT+ T A+  L+L DY KV      E   F    I +
Sbjct: 87  FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINK 146

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
            M K+  +D  QT++V+  ++   Y AGHVLGAAMF   +    ++YTGDY+   DRHL 
Sbjct: 147 SMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLR 206

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA++ +   D+ I EST    +  S++ RE+ F   +H+ VA GG+VLIP FALGRAQEL
Sbjct: 207 AAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQEL 266

Query: 248 CILLDDYWERMN--LKIPIYFSAGLTVQANMYYKMLISWTSQKFKS-FDRSM-------- 307
            ++LD+YW        IPIY+++ L  +    Y+  I   + + ++ F  S         
Sbjct: 267 LLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHIS 326

Query: 308 -------IDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMS 367
                   +  GP V+ ATPG +  G S ++F  W   K N   +PGY V GT+  K + 
Sbjct: 327 PLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLA-KTII 386

Query: 368 GKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEK 423
            +P ++ L       +  Q       +H ++FS H D       +K L P ++ILVHGE 
Sbjct: 387 NEPKEVTLMNGLTAPLNMQ-------VHYISFSAHADYAQTSTFLKELMPPNIILVHGEA 444

[Close]

BLAST of Carg26838 vs. TAIR10
Match: AT5G23880.1 (cleavage and polyadenylation specificity factor 100)

HSP 1 Score: 146.7 bits (369), Expect = 5.0e-35
Identity = 102/363 (28.10%), Postives = 165/363 (45.45%), Query Frame = 0


Query: 20  VVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITHFHLDHIGALPYF 79
           +V+I+G   + DCG +    D       SR++++ D       V+++H    HIGALPY 
Sbjct: 22  LVSIDGFNFLIDCGWN-DLFDTSLLEPLSRVASTID------AVLLSHPDTLHIGALPYA 81

Query: 80  TEVCGYNGPIYMTYPTLALAPLMLEDY---RKVMVDRRGEAEQFSNDHIMECMKKVIPVD 139
            +  G + P+Y T P   L  L + D    RK + D     + F+ D I    + VI + 
Sbjct: 82  MKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSD----FDLFTLDDIDSAFQNVIRLT 141

Query: 140 LKQTIQVD---EDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 199
             Q   +    E + I  + AGH+LG +++        ++Y  DYN   +RHL    +  
Sbjct: 142 YSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGTVLQS 201

Query: 200 -MQLDLLITESTYAT-TIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILL 259
            ++  +LIT++ +A  T + ++  R++EFL  +   +  GG VL+P    GR  EL ++L
Sbjct: 202 FVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLIL 261

Query: 260 DDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKF-KSFDRSMIDA----------- 319
           + +W +     PIYF   ++     Y K  + W S    KSF+ S  +A           
Sbjct: 262 EQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAFLLRHVTLLIN 321

Query: 320 --------PGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGK 355
                   PGP V+ A+   +  GF+ E+F  WA    NL+        GT+   L S  
Sbjct: 322 KTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAP 373

[Close]

BLAST of Carg26838 vs. TAIR10
Match: AT3G07530.1 (Beta-Casp domain (InterPro:IPR022712))

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-07
Identity = 62/280 (22.14%), Postives = 109/280 (38.93%), Query Frame = 0


Query: 120 FSNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYN 179
           +S D I  CMKKV  V   + +  +  L I+A  +G  +GA  +     + ++ Y  D +
Sbjct: 200 YSLDDIESCMKKVQGVKFAEEVCYNGTLIIKALSSGLDIGACNWLINGPNGSLSYVSD-S 259

Query: 180 MTPDRHLGAAQIDRM-QLDLLI---------------------TESTYATTIRDSKYG-- 239
           +    H  +     + + D+LI                     +++ Y +TI D+K    
Sbjct: 260 IFVSHHARSFDFHGLKETDVLIYSDFSSLQSAEVTEDGCISPDSDNNYISTISDNKDSLL 319

Query: 240 ------REREFLKAVHNCVA----SGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIY 299
                  E E L  V +C A    +GG  LI    +G   +L  LL +  E  +LK+PI+
Sbjct: 320 NTEDSLEEMEKLAFVCSCAAESADAGGSTLITITRIGIVLQLLELLSNSLESSSLKVPIF 379

Query: 300 FSAGLTVQANMYYKMLISW----TSQKFKSFDRSM----------------IDAPG---- 335
             + +  +   Y   +  W      +K  S + S                 I +P     
Sbjct: 380 VISSVAEELLAYTNTIPEWLCEQRQEKLISGEPSFGHLKFIKNKKIHLFPAIHSPNLIYA 439

[Close]

BLAST of Carg26838 vs. TAIR10
Match: AT5G63420.1 (RNA-metabolising metallo-beta-lactamase family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-05
Identity = 32/105 (30.48%), Postives = 51/105 (48.57%), Query Frame = 0


Query: 6   LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLD----HRRYPDFSRISASRDYNTVLS 65
           L +G   E+G +C++V    + I+ D G+     D     +  PD   I   R +   + 
Sbjct: 113 LPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPDYDEPGIQKIMPDTGFI---RRWKHKIE 172

Query: 66  CVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDY 107
            V+ITH H DHIGALP+       N PI+ +  T+ L    L+++
Sbjct: 173 AVVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEH 214

[Close]

BLAST of Carg26838 vs. Swiss-Prot
Match: sp|Q8GUU3|CPS3B_ARATH (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana OX=3702 GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 817.8 bits (2111), Expect = 9.0e-236
Identity = 409/676 (60.50%), Postives = 486/676 (71.89%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHMG  DH RYP+FS IS S D++  +
Sbjct: 1   MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFH+DH+GALPYFTEVCGYNGPIYM+YPT AL+PLMLEDYR+VMVDRRGE E F
Sbjct: 61  SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +  HI  CMKKVI +DLKQTIQVDEDLQIRAYYAGHVLGA M YAK+GDAA+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           T DRHLGAA+IDR+QLDLLI+ESTYATTIR SKY REREFL+AVH CVA GGK LIP+FA
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQ------------- 300
           LGRAQELC+LLDDYWERMN+K+PIYFS+GLT+QANMYYKMLISWTSQ             
Sbjct: 241 LGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFD 300

Query: 301 --KFKSFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
               K FDRS+I APGPCVLFATPGM+  GFSLEVFK WAPS LNL+ LPGY VAGT+GH
Sbjct: 301 FKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLM+GKPT +DL   T++DV+C+       +HQ+AFSPHTD+KGIMDL KFLSPK+V+LV
Sbjct: 361 KLMAGKPTTVDLYNGTKVDVRCK-------VHQVAFSPHTDAKGIMDLTKFLSPKNVVLV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKP M+ LKE+I SEL IPC  PAN ETVS +ST  IKA +S MF++SCS PNFKF  
Sbjct: 421 HGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKF-- 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
                                                          S   +L V+D R 
Sbjct: 481 -----------------------------------------------SNSTQLRVTDHRT 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
            +G+LV+E  KK K+VHQDE+  +L E+ H V  A+C P+      +   +D I      
Sbjct: 541 ADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKGESEDDDVDLI------ 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
             QLS+K+   +S   +      LQV SF  S+C K+ C +R+++   + S A F CC+W
Sbjct: 601 -KQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSS---SSSEAVFLCCNW 610

Query: 661 LVADEVLAWQIISILE 662
            +AD  L W+II+ ++
Sbjct: 661 SIADLELGWEIINAIK 610

[Close]

BLAST of Carg26838 vs. Swiss-Prot
Match: sp|Q54YL3|INT11_DICDI (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=ints11 PE=3 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 1.3e-165
Identity = 282/475 (59.37%), Postives = 356/475 (74.95%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTI  + LGAGQ+VG+SCV+VTI  K IMFDCGMHMG  D RR+PDFS IS +  +  V+
Sbjct: 1   MTIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVI 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
            CVIITHFHLDH GALP+FTE+CGY+GPIYMT PT A+ P++LEDYRK+ V+++GE   F
Sbjct: 61  DCVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +   I +CMKKVIPV+L QTI+VDE+L I+AYYAGHVLGAAMFYAKVGD ++VYTGDYNM
Sbjct: 121 TAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLG+A ID+++ D+LITE+TYATTIRDSK GRER+FLK +H CV  GGKVLIP FA
Sbjct: 181 TPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFA 240

Query: 241 LGRAQELCILLDDYWERMNL-KIPIYFSAGLTVQANMYYKMLISWTSQKFKS-------- 300
           LGR QELCIL+D YWE+MNL  IPIYFSAGL  +AN+YYK+ I+WT+QK K         
Sbjct: 241 LGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINWTNQKIKQTFVKRNMF 300

Query: 301 -------FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIG 360
                  F   ++DAPG  VLFATPGM+  G SLEVFK+WAP++LN+  +PGYCV GT+G
Sbjct: 301 DFKHIKPFQSHLVDAPGAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVGTVG 360

Query: 361 HKLMS--------GKPTK--IDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLV 420
           +KL++         KP    +++DK T I+V+C+       IH L+FS H D+KGI+ L+
Sbjct: 361 NKLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCK-------IHNLSFSAHADAKGILQLI 420

Query: 421 KFLSPKHVILVHGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESS 450
           K  +P++VILVHGEK KM  L ++I  E+G+ C+ PAN  T+ I +  SI  + S
Sbjct: 421 KMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMKSIPIDIS 468

[Close]

BLAST of Carg26838 vs. Swiss-Prot
Match: sp|Q9CWS4|INT11_MOUSE (Integrator complex subunit 11 OS=Mus musculus OX=10090 GN=Ints11 PE=1 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 1.9e-156
Identity = 261/452 (57.74%), Postives = 342/452 (75.66%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAGQ+VG+SC++V+I+GK +M DCGMHMGY D RR+PDFS I+ S      L CVII+H
Sbjct: 9   LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FHLDH GALPYF+E+ GY+GPIYMT+PT A+ P++LEDYRK+ VD++GEA  F++  I +
Sbjct: 69  FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
           CMKKV+ V L QT+QVD++L+I+AYYAGHVLGAAMF  KVG  ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA ID+ + +LLITESTYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQEL
Sbjct: 189 AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 248

Query: 248 CILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK---------------FKSF 307
           CILL+ +WERMNLK+PIYFS GLT +AN YYK+ I+WT+QK                K+F
Sbjct: 249 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAF 308

Query: 308 DRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKP 367
           DR+  D PGP V+FATPGM+  G SL++F++WA ++ N++ +PGYCV GT+GHK++SG+ 
Sbjct: 309 DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ- 368

Query: 368 TKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 427
            K++++    ++V+ Q       +  ++FS H D+KGIM LV    P+ V+LVHGE  KM
Sbjct: 369 RKLEMEGRQMLEVKMQ-------VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKM 428

Query: 428 VTLKERIHSELGIPCHDPANNETVSISSTLSI 445
             L+++I  E  + C+ PAN ETV++ ++ SI
Sbjct: 429 EFLRQKIEQEFRVSCYMPANGETVTLPTSPSI 452

[Close]

BLAST of Carg26838 vs. Swiss-Prot
Match: sp|Q3MHC2|INT11_RAT (Integrator complex subunit 11 OS=Rattus norvegicus OX=10116 GN=Ints11 PE=2 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 1.9e-156
Identity = 261/452 (57.74%), Postives = 342/452 (75.66%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAGQ+VG+SC++V+I+GK +M DCGMHMGY D RR+PDFS I+ S      L CVII+H
Sbjct: 9   LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FHLDH GALPYF+E+ GY+GPIYMT+PT A+ P++LEDYRK+ VD++GEA  F++  I +
Sbjct: 69  FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
           CMKKV+ V L QT+QVD++L+I+AYYAGHVLGAAMF  KVG  ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA ID+ + +LLITESTYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQEL
Sbjct: 189 AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 248

Query: 248 CILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK---------------FKSF 307
           CILL+ +WERMNLK+PIYFS GLT +AN YYK+ I+WT+QK                K+F
Sbjct: 249 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAF 308

Query: 308 DRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKP 367
           DR+  D PGP V+FATPGM+  G SL++F++WA ++ N++ +PGYCV GT+GHK++SG+ 
Sbjct: 309 DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ- 368

Query: 368 TKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 427
            K++++    ++V+ Q       +  ++FS H D+KGIM LV    P+ V+LVHGE  KM
Sbjct: 369 RKLEMEGRQMLEVKMQ-------VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKM 428

Query: 428 VTLKERIHSELGIPCHDPANNETVSISSTLSI 445
             L+++I  E  + C+ PAN ETV++ ++ SI
Sbjct: 429 EFLRQKIEQEFRVSCYMPANGETVTLPTSPSI 452

[Close]

BLAST of Carg26838 vs. Swiss-Prot
Match: sp|Q5ZIH0|INT11_CHICK (Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 9.2e-156
Identity = 262/457 (57.33%), Postives = 341/457 (74.62%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAGQ+VG+SC++V+I GK +M DCGMHMGY D RR+PDFS I+ +      L CVII+H
Sbjct: 9   LGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISH 68

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FHLDH GALPYF+E+ GY+GPIYMT+PT A+ P++LEDYRK+ VD++GE   F++  I +
Sbjct: 69  FHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKD 128

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
           CMKKV+ V L QT+QVDE+L+I+AYYAGHVLGAAMF  KVG  ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLG 188

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA ID+ + DLLITESTYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQEL
Sbjct: 189 AAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 248

Query: 248 CILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK---------------FKSF 307
           CILL+ +WERMNLK PIYFS GLT +AN YYK+ I+WT+QK                K+F
Sbjct: 249 CILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAF 308

Query: 308 DRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKP 367
           DR+  D PGP V+FATPGM+  G SL++F++WA ++ N++ +PGYCV GT+GHK++SG+ 
Sbjct: 309 DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ- 368

Query: 368 TKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 427
            K++++    ++V+ Q       +  ++FS H D+KGIM L++   P++V+LVHGE  KM
Sbjct: 369 RKLEMEGRQILEVKMQ-------VEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGEAKKM 428

Query: 428 VTLKERIHSELGIPCHDPANNETVSISSTLSIKAESS 450
             LK++I  E  + C+ PAN ET +I +  SI  + S
Sbjct: 429 EFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDIS 457

[Close]

BLAST of Carg26838 vs. TrEMBL
Match: tr|A0A1S3C9L2|A0A1S3C9L2_CUCME (cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=3656 GN=LOC103498350 PE=4 SV=1)

HSP 1 Score: 1156.0 bits (2989), Expect = 0.0e+00
Identity = 603/686 (87.90%), Postives = 628/686 (91.55%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISASRDYN  L
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFHLDHIGALPYFTE+CGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF
Sbjct: 61  SCIIITHFHLDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +NDHIMEC+KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELC+LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       +HQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------VHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLSIKAE+SSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKI--NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDD 540
           RNL DKI  +         XXXXXXXXXXXXXXXXXXXXXXXXXXXXX SCGPEL+VSDD
Sbjct: 481 RNLIDKIDPDLKDLSYKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCGPELQVSDD 540

Query: 541 RVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKS 600
           RVNEGILVMENGKKTK +HQDELLLLLGEQEHEVRFA+C PIYFGSLD+ HVMD +SRKS
Sbjct: 541 RVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKS 600

Query: 601 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYC 660
           LWLSQLS KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRTTNRIENES+A  F C
Sbjct: 601 LWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESSAMVFCC 660

Query: 661 CSWLVADEVLAWQIISILEKHDLSST 669
           CSWLVADE+LAW+IISILEKHDL ST
Sbjct: 661 CSWLVADEILAWKIISILEKHDLGST 679

[Close]

BLAST of Carg26838 vs. TrEMBL
Match: tr|A0A0A0LQW3|A0A0A0LQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435430 PE=4 SV=1)

HSP 1 Score: 1140.9 bits (2950), Expect = 0.0e+00
Identity = 590/684 (86.26%), Postives = 617/684 (90.20%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISAS DYN VL
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFHLDHIGALPYFTEVCGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF
Sbjct: 61  SCIIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +NDHIMEC+KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELC+LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDK TQIDVQCQ       +HQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKVTQIDVQCQ-------VHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLS+KAE+SSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
           RNL D  +         XXXXXXXXXXXXXXXXXXXXXXX      LSCGP L+VSDDRV
Sbjct: 481 RNLIDP-DLKDLSYKAEXXXXXXXXXXXXXXXXXXXXXXXAKFDSSLSCGPALQVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVMENGKKTK +HQDELLLLLG+QEHEVRFA+C PIYFGSLD+ HVMD +SRKSLW
Sbjct: 541 NEGILVMENGKKTKALHQDELLLLLGQQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYCCS 660
           LSQLS KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRT +RI+NES A  F CCS
Sbjct: 601 LSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTIDRIKNESTAMVFCCCS 660

Query: 661 WLVADEVLAWQIISILEKHDLSST 669
           WLVADE+LAW+IISILEKHDL ST
Sbjct: 661 WLVADEILAWKIISILEKHDLGST 676

[Close]

BLAST of Carg26838 vs. TrEMBL
Match: tr|Q6E435|Q6E435_CUCME (ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=4 SV=1)

HSP 1 Score: 1120.9 bits (2898), Expect = 0.0e+00
Identity = 591/678 (87.17%), Postives = 614/678 (90.56%), Query Frame = 0


Query: 10  AGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITHFH 69
           AGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISASRDYN  LSC+IITHFH
Sbjct: 42  AGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFH 101

Query: 70  LDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIMECM 129
           LDHIGALPYFTE+CGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF+NDHIMEC+
Sbjct: 102 LDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIMECL 161

Query: 130 KKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA 189
           KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA
Sbjct: 162 KKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA 221

Query: 190 QIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRA-QELC 249
           QIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFALGRA QELC
Sbjct: 222 QIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQQELC 281

Query: 250 ILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------------SFD 309
           +LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K                FD
Sbjct: 282 VLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFD 341

Query: 310 RSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKPT 369
           RSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GHKLMSGKPT
Sbjct: 342 RSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPT 401

Query: 370 KIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMV 429
           KIDLDKDTQIDV           HQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 
Sbjct: 402 KIDLDKDTQIDV-----------HQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMA 461

Query: 430 TLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLKRNLNDKI- 489
            LKERIHSELGIPCHDPANNETVSISSTLSIKAE+SSMFIQSCSTPNFKFLKRNL DKI 
Sbjct: 462 VLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMFIQSCSTPNFKFLKRNLIDKID 521

Query: 490 -NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRVNEGILV 549
            +         XXXXXXXXXXXXXXXXXXXXXXXXXXXXX S GPEL+VSDDRVNEGILV
Sbjct: 522 PDLKDLSYKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGPELQVSDDRVNEGILV 581

Query: 550 MENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLWLSQLSS 609
           MENGKKTK +HQDELLLLLGEQEHEVRFA+C PIYFGSLD+ HVMD +SRKSLWLSQLS 
Sbjct: 582 MENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSF 641

Query: 610 KLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYCCSWLVADE 669
           KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRTTNRIENES A  F CCSWLVADE
Sbjct: 642 KLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVADE 701

[Close]

BLAST of Carg26838 vs. TrEMBL
Match: tr|A0A061E8Z1|A0A061E8Z1_THECC (Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma cacao OX=3641 GN=TCM_011055 PE=4 SV=1)

HSP 1 Score: 956.4 bits (2471), Expect = 3.3e-275
Identity = 480/688 (69.77%), Postives = 545/688 (79.22%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVV+INGKRIMFDCGMHMGY D RRYPDFS IS + D++  L
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVSINGKRIMFDCGMHMGYTDSRRYPDFSLISKTGDFDNAL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           +CVIITHFHLDHIGALPYFTEVCGY GP+YMTYPT ALAPLMLEDYRK M DRRGE  QF
Sbjct: 61  TCVIITHFHLDHIGALPYFTEVCGYRGPVYMTYPTKALAPLMLEDYRKNM-DRRGEDGQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           ++DHI ECMKKVIPVDLKQT+QVD+DLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TSDHITECMKKVIPVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDR+QLDLLITESTYATTIRDS+YGREREFLKAVHNCVA+GGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRLQLDLLITESTYATTIRDSRYGREREFLKAVHNCVAAGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILL+DYWERMNLK+PIYFS+GLT+QANMYYKMLI+WTSQK K          
Sbjct: 241 LGRAQELCILLEDYWERMNLKVPIYFSSGLTIQANMYYKMLINWTSQKIKETYATHNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                +FDRS+I+APGPCVLFATPGMISGGFSLEVF +WAPS++NLITLPGYCVAGTIGH
Sbjct: 301 FKNVQNFDRSLINAPGPCVLFATPGMISGGFSLEVFMQWAPSEINLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQ+DV+CQ       IHQL+FSPHTD+KGIMDLVKFLSPKH ILV
Sbjct: 361 KLMSGKPTKIDLDKDTQVDVRCQ-------IHQLSFSPHTDAKGIMDLVKFLSPKHAILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM TLKERI SELGI C+ PANN+TV+I +T  +KA++S  FI+SC  PNFKF K
Sbjct: 421 HGEKPKMATLKERIQSELGIQCYCPANNDTVTIPTTHYVKADASDAFIKSCLNPNFKFSK 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
            +  DK                                            P L+VSD+RV
Sbjct: 481 SSSVDK---------------------------------SYSGSNDSKAIPGLQVSDERV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMD-------- 600
            EGILV+E GKK KV+HQDELL +LGE +HEV+FA C P+    L+ T   D        
Sbjct: 541 AEGILVVEKGKKAKVIHQDELLHMLGENKHEVQFAYCFPMRTERLEKTRSEDLPSADDLL 600

Query: 601 CISRKSLWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESA 660
           C   K   +S LS+KLS+ELSD N+Q+ GE LQVESF LSIC K++CP+R ++ ++N+S 
Sbjct: 601 CGLDKCTLISLLSTKLSNELSDGNIQDLGEQLQVESFCLSICLKDNCPHRISDSLQNDSE 647

Query: 661 AAFYCCSWLVADEVLAWQIISILEKHDL 666
             F+CCSW VADE+LAW+IISI++ + L
Sbjct: 661 VVFFCCSWSVADEMLAWKIISIMKNYTL 647

[Close]

BLAST of Carg26838 vs. TrEMBL
Match: tr|A0A2P4KXV8|A0A2P4KXV8_QUESU (Cleavage and polyadenylation specificity factor subunit 3-ii OS=Quercus suber OX=58331 GN=CFP56_33805 PE=4 SV=1)

HSP 1 Score: 954.1 bits (2465), Expect = 1.6e-274
Identity = 475/686 (69.24%), Postives = 540/686 (78.72%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M ID LVLGAGQ+VGKSCVVV++NGKRIMFDCGM M Y DHRRYPDFSRIS S D+++ L
Sbjct: 1   MAIDSLVLGAGQQVGKSCVVVSMNGKRIMFDCGMDMAYHDHRRYPDFSRISNSGDFDSAL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           +C++ITHFHLDHIGALPYFTEVCGY+GPIYMTYPT ALAPLMLEDYRKVMV+RRGE EQF
Sbjct: 61  TCIVITHFHLDHIGALPYFTEVCGYSGPIYMTYPTKALAPLMLEDYRKVMVERRGEEEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           S++HI+ECMKKVI VDLKQT+ VD+DLQIRAYYAGHVLGAAMFYAKVGD AMVYTGDYNM
Sbjct: 121 SSEHIVECMKKVIAVDLKQTVHVDKDLQIRAYYAGHVLGAAMFYAKVGDTAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDR+QLDLLI+ESTYATTIRDSKYGREREFLKAVH CVA GGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRLQLDLLISESTYATTIRDSKYGREREFLKAVHKCVAGGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILL+DYWERMNLKIPIYFS+GLT+QANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLEDYWERMNLKIPIYFSSGLTMQANMYYKMLISWTSQKVKDTYSTHNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                +FDRSMI APGPCVLFATPG +SGGFSLEVFK+WAPS++NL+TLPGYC AGTIGH
Sbjct: 301 FKHVLNFDRSMIAAPGPCVLFATPGWLSGGFSLEVFKQWAPSEMNLVTLPGYCAAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDK+TQ+DV+CQ       IHQL+FSPHTD+KGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKNTQLDVRCQ-------IHQLSFSPHTDAKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM TLK RI+SELGIPC DPANNETVSISST  +KA +S  FI S   PNFKF K
Sbjct: 421 HGEKPKMATLKGRINSELGIPCDDPANNETVSISSTHYVKARASDTFIHSSLNPNFKFSK 480

Query: 481 RNLNDKINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCGPELEVSDDRV 540
           R   D+                                            P+L+V D+R 
Sbjct: 481 RISEDESGSCLKDRRFM---------------------------------PQLQVMDERT 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMD----CISR 600
            EGIL+ E  KK K++HQDELLL+LGE++HEVRFA C PI   +L++T        C S 
Sbjct: 541 AEGILIEEKNKKAKILHQDELLLMLGEKKHEVRFAYCCPINVSNLEETKSTSDNVLCTSD 600

Query: 601 KSLWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFY 660
           +  WL  L++KLS E+S  N+Q+FGE+LQVESF +S+C  + CPYR  +  +N+S A F+
Sbjct: 601 RCSWLQLLNNKLSGEISSGNIQDFGEHLQVESFDISVCLNDKCPYRIIDS-QNKSEAVFF 645

Query: 661 CCSWLVADEVLAWQIISILEKHDLSS 668
           CC+W VADE LAW+IISI+E  D  S
Sbjct: 661 CCTWSVADEKLAWKIISIMENFDCES 645

The following BLAST results are available for this feature:

BLAST of Carg26838 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944195.1	0.0e+00	96.49	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbi...	[more]
XP_022986472.1	0.0e+00	95.61	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbi...	[more]
XP_023513382.1	0.0e+00	95.75	cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita pepo sub...	[more]
XP_008459147.1	0.0e+00	87.90	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Cucumis...	[more]
XP_011650067.1	0.0e+00	86.26	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ...	[more]

BLAST of Carg26838 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01730.1	5.0e-237	60.50	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]
AT1G61010.1	1.2e-76	36.72	cleavage and polyadenylation specificity factor 73-I	[more]
AT5G23880.1	5.0e-35	28.10	cleavage and polyadenylation specificity factor 100	[more]
AT3G07530.1	4.4e-07	22.14	Beta-Casp domain (InterPro:IPR022712)	[more]
AT5G63420.1	1.4e-05	30.48	RNA-metabolising metallo-beta-lactamase family protein	[more]

BLAST of Carg26838 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GUU3\|CPS3B_ARATH	9.0e-236	60.50	Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal...	[more]
sp\|Q54YL3\|INT11_DICDI	1.3e-165	59.37	Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=in...	[more]
sp\|Q9CWS4\|INT11_MOUSE	1.9e-156	57.74	Integrator complex subunit 11 OS=Mus musculus OX=10090 GN=Ints11 PE=1 SV=1	[more]
sp\|Q3MHC2\|INT11_RAT	1.9e-156	57.74	Integrator complex subunit 11 OS=Rattus norvegicus OX=10116 GN=Ints11 PE=2 SV=1	[more]
sp\|Q5ZIH0\|INT11_CHICK	9.2e-156	57.33	Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1	[more]

BLAST of Carg26838 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9L2\|A0A1S3C9L2_CUCME	0.0e+00	87.90	cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=...	[more]
tr\|A0A0A0LQW3\|A0A0A0LQW3_CUCSA	0.0e+00	86.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435430 PE=4 SV=1	[more]
tr\|Q6E435\|Q6E435_CUCME	0.0e+00	87.17	ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=4 SV=1	[more]
tr\|A0A061E8Z1\|A0A061E8Z1_THECC	3.3e-275	69.77	Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma c...	[more]
tr\|A0A2P4KXV8\|A0A2P4KXV8_QUESU	1.6e-274	69.24	Cleavage and polyadenylation specificity factor subunit 3-ii OS=Quercus suber OX...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011108	RMMBL
IPR036866	RibonucZ/Hydroxyglut_hydro
IPR022712	Beta_Casp
IPR001279	Metallo-B-lactamas

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26838-RA	Carg26838-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	SMART	SM00849	Lactamase_B_5a	coord: 15..232 e-value: 1.8E-20 score: 84.0
IPR001279	Metallo-beta-lactamase	PFAM	PF16661	Lactamase_B_6	coord: 21..192 e-value: 8.8E-21 score: 74.1
IPR022712	Beta-Casp domain	SMART	SM01027	Beta_Casp_2	coord: 244..347 e-value: 2.4E-26 score: 103.5
IPR022712	Beta-Casp domain	PFAM	PF10996	Beta-Casp	coord: 244..347 e-value: 1.1E-23 score: 83.4
None	No IPR available	GENE3D	G3DSA:3.40.50.10890		coord: 212..381 e-value: 2.8E-136 score: 456.1
None	No IPR available	PANTHER	PTHR11203:SF37	INTEGRATOR COMPLEX SUBUNIT 11	coord: 2..473
None	No IPR available	PANTHER	PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	coord: 2..473
None	No IPR available	CDD	cd16291	INTS11-like_MBL-fold	coord: 5..203 e-value: 1.90237E-129 score: 382.379
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	GENE3D	G3DSA:3.60.15.10		coord: 8..211 e-value: 2.8E-136 score: 456.1 coord: 382..416 e-value: 2.8E-136 score: 456.1
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	SUPERFAMILY	SSF56281	Metallo-hydrolase/oxidoreductase	coord: 4..439
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 376..428 e-value: 1.4E-12 score: 47.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26838	Cla012977	Watermelon (97103) v1	carwmB0417
Carg26838	Csa2G435430	Cucumber (Chinese Long) v2	carcuB0452
Carg26838	MELO3C021829	Melon (DHL92) v3.5.1	carmeB0429
Carg26838	ClCG09G016760	Watermelon (Charleston Gray)	carwcgB0413
Carg26838	CSPI02G27550	Wild cucumber (PI 183967)	carcpiB0457
Carg26838	CmaCh20G009340	Cucurbita maxima (Rimu)	carcmaB0584
Carg26838	CmoCh20G009410	Cucurbita moschata (Rifu)	carcmoB0568
Carg26838	Lsi10G002420	Bottle gourd (USVL1VR-Ls)	carlsiB382
Carg26838	Cp4.1LG16g01800	Cucurbita pepo (Zucchini)	carcpeB0590
Carg26838	CsGy2G027010	Cucumber (Gy14) v2	carcgybB0428
Carg26838	MELO3C021825.2	Melon (DHL92) v3.6.1	carmedB0431
Carg26838	CsaV3_2G036200	Cucumber (Chinese Long) v3	carcucB0453
Carg26838	Cla97C09G178390	Watermelon (97103) v2	carwmbB0444

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None