Carg26786 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26786
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein pelota 1
Location	Cucurbita_argyrosperma_scaffold_327 : 126967 .. 127320 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACTCTTGTGCTTCCTACAGAGCCATCTTGCCTTGTTGCCTCAAGGTCGATGCAGCACACAACCAGGTGGAAGCTTTGAAGATTGTTAAACCAGATGGGAAGGTGTTGGGGTTCACCACGCCAACGCTCAAACCCAGCCTCATGGATGATTCAGATAAACCCAGCAGCACAAGGAGAGTCAGAATCGTTTTAACAAAGAAGCAGCTCAAGCTGTTGGTGGACAAACAAGTGTCAATGGAAGAGCTACTTATGCAGCAGATTGAGAAAACCACGTTGTGCAGTGTTCTTGAATGTTCATCATCTTGGAAGCCTGCACTGGCAGCCATTCCTGAAGGAAATGAAGCATAA

mRNA sequence

ATGGGTAACTCTTGTGCTTCCTACAGAGCCATCTTGCCTTGTTGCCTCAAGGTCGATGCAGCACACAACCAGGTGGAAGCTTTGAAGATTGTTAAACCAGATGGGAAGGTGTTGGGGTTCACCACGCCAACGCTCAAACCCAGCCTCATGGATGATTCAGATAAACCCAGCAGCACAAGGAGAGTCAGAATCGTTTTAACAAAGAAGCAGCTCAAGCTGTTGGTGGACAAACAAGTGTCAATGGAAGAGCTACTTATGCAGCAGATTGAGAAAACCACGTTGTGCAGTGTTCTTGAATGTTCATCATCTTGGAAGCCTGCACTGGCAGCCATTCCTGAAGGAAATGAAGCATAA

Coding sequence (CDS)

ATGGGTAACTCTTGTGCTTCCTACAGAGCCATCTTGCCTTGTTGCCTCAAGGTCGATGCAGCACACAACCAGGTGGAAGCTTTGAAGATTGTTAAACCAGATGGGAAGGTGTTGGGGTTCACCACGCCAACGCTCAAACCCAGCCTCATGGATGATTCAGATAAACCCAGCAGCACAAGGAGAGTCAGAATCGTTTTAACAAAGAAGCAGCTCAAGCTGTTGGTGGACAAACAAGTGTCAATGGAAGAGCTACTTATGCAGCAGATTGAGAAAACCACGTTGTGCAGTGTTCTTGAATGTTCATCATCTTGGAAGCCTGCACTGGCAGCCATTCCTGAAGGAAATGAAGCATAA

Protein sequence

MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGKVLGFTTPTLKPSLMDDSDKPSSTRRVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA

Homology

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BLAST of Carg26786 vs. NCBI nr
Match: XP_022922389.1 (uncharacterized protein LOC111430396 [Cucurbita moschata])

HSP 1 Score: 229.2 bits (583), Expect = 7.3e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGKVLGFTTPTLKPSLMDDSDKPSSTR 60
           MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGKVLGFTTPTLKPSLMDDSDKPSSTR
Sbjct: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGKVLGFTTPTLKPSLMDDSDKPSSTR 60

Query: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 118
           RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA
Sbjct: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117

[Close]

BLAST of Carg26786 vs. NCBI nr
Match: XP_023551614.1 (uncharacterized protein LOC111809394 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.7 bits (548), Expect = 8.4e-53
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MGNSCASYRAILPCCLKVDAAHNQVEALKIVKPDGKVLGFTTPTLKPSLMDDSDKPSSTR 60
           MGNSCASYRAILPCCLKVDAAH QVE L+IVKPDGKVL  TTPTLKP+LMDDSDKPSSTR
Sbjct: 1   MGNSCASYRAILPCCLKVDAAHKQVEPLEIVKPDGKVLELTTPTLKPNLMDDSDKPSSTR 60

Query: 61  RVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 118
           RV+IVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA
Sbjct: 61  RVKIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLECSSSWKPALAAIPEGNEA 117

[Close]

BLAST of Carg26786 vs. NCBI nr
Match: XP_011654573.1 (PREDICTED: uncharacterized protein LOC105435418 [Cucumis sativus] >KGN49817.1 hypothetical protein Csa_5G138490 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 84/170 (49.41%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 1   MGNS-CASYRAILPCCLKVDAAH--NQVEALKIVKPDGKVLGFTTPTL------------ 60
           MGNS C SY    PCCLKVDAAH  N  EALKIVK DGKVL FTTPTL            
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLEFTTPTLVKDVLVNFTGFV 60

Query: 61  --------------------------------------KPSLMDDSDKPSSTRRVRIVLT 118
                                                   S + DS K  STRRVRIVLT
Sbjct: 61  IGSSQDVSHHHHLSPEFELKMGQVYYMLPSPQPTALPPPHSFIQDSHKSRSTRRVRIVLT 120

[Close]

BLAST of Carg26786 vs. NCBI nr
Match: XP_008437666.1 (PREDICTED: uncharacterized protein LOC103483007 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 81/170 (47.65%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 1   MGNS-CASYRAILPCCLKVDAAH--NQVEALKIVKPDGKVLGFTTPTLKPSLM------- 60
           MGNS C SY    PCCLKVDAAH  N  EALKIVK DGKVL FTTPTL   ++       
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLQFTTPTLVKDVLVNFTGFV 60

Query: 61  -------------------------------------------DDSDKPSSTRRVRIVLT 118
                                                       D  K SSTRRVRIVLT
Sbjct: 61  IGSSQDVSDHHHLSPDFELKMGQVYYMLPSPQAAAPXXPHTFIQDLHKSSSTRRVRIVLT 120

[Close]

BLAST of Carg26786 vs. NCBI nr
Match: XP_023896768.1 (uncharacterized protein LOC112008673 [Quercus suber] >POE55552.1 hypothetical protein CFP56_67896 [Quercus suber])

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 38  LGFTTPTLKPSLMDDSDKPSSTRRVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSV 97
           +G T+P    S + + +K +S RR++IV+TKKQL+ L+ KQ S+E++L   +E+ T  + 
Sbjct: 83  VGTTSPADNMSSLAEKEKDNSVRRIKIVITKKQLQELLAKQASVEDVL-SGLERKTCNNA 142

Query: 98  LECSSSWKPALAAIPEGNE 117
            +  +SWKP L +I EG+E
Sbjct: 143 FDSRTSWKPKLESISEGSE 160

[Close]

BLAST of Carg26786 vs. TrEMBL
Match: tr|A0A0A0KN21|A0A0A0KN21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138490 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.9e-26
Identity = 84/170 (49.41%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 1   MGNS-CASYRAILPCCLKVDAAH--NQVEALKIVKPDGKVLGFTTPTL------------ 60
           MGNS C SY    PCCLKVDAAH  N  EALKIVK DGKVL FTTPTL            
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLEFTTPTLVKDVLVNFTGFV 60

Query: 61  --------------------------------------KPSLMDDSDKPSSTRRVRIVLT 118
                                                   S + DS K  STRRVRIVLT
Sbjct: 61  IGSSQDVSHHHHLSPEFELKMGQVYYMLPSPQPTALPPPHSFIQDSHKSRSTRRVRIVLT 120

[Close]

BLAST of Carg26786 vs. TrEMBL
Match: tr|A0A1S3AUP7|A0A1S3AUP7_CUCME (uncharacterized protein LOC103483007 OS=Cucumis melo OX=3656 GN=LOC103483007 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 81/170 (47.65%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 1   MGNS-CASYRAILPCCLKVDAAH--NQVEALKIVKPDGKVLGFTTPTLKPSLM------- 60
           MGNS C SY    PCCLKVDAAH  N  EALKIVK DGKVL FTTPTL   ++       
Sbjct: 1   MGNSCCVSYTIKFPCCLKVDAAHKQNHGEALKIVKSDGKVLQFTTPTLVKDVLVNFTGFV 60

Query: 61  -------------------------------------------DDSDKPSSTRRVRIVLT 118
                                                       D  K SSTRRVRIVLT
Sbjct: 61  IGSSQDVSDHHHLSPDFELKMGQVYYMLPSPQAAAPXXPHTFIQDLHKSSSTRRVRIVLT 120

[Close]

BLAST of Carg26786 vs. TrEMBL
Match: tr|A0A2N9IS98|A0A2N9IS98_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56209 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 41  TTPTLKPSLMDDSDKPSSTRRVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSVLEC 100
           T+P    S+  D +K +  +R++IV+TK+QL+ L+ KQ+S+E++L   +EK   C+ L+ 
Sbjct: 93  TSPADISSIAHDKEKANGVKRIKIVITKQQLQELLKKQISVEDIL-SGLEKRA-CNTLDS 152

Query: 101 SSSWKPALAAIPEGNE 117
           +++WKP L AIPEG+E
Sbjct: 153 TTNWKPRLEAIPEGSE 166

[Close]

BLAST of Carg26786 vs. TrEMBL
Match: tr|A0A2P4HGZ5|A0A2P4HGZ5_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_67896 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 38  LGFTTPTLKPSLMDDSDKPSSTRRVRIVLTKKQLKLLVDKQVSMEELLMQQIEKTTLCSV 97
           +G T+P    S + + +K +S RR++IV+TKKQL+ L+ KQ S+E++L   +E+ T  + 
Sbjct: 83  VGTTSPADNMSSLAEKEKDNSVRRIKIVITKKQLQELLAKQASVEDVL-SGLERKTCNNA 142

Query: 98  LECSSSWKPALAAIPEGNE 117
            +  +SWKP L +I EG+E
Sbjct: 143 FDSRTSWKPKLESISEGSE 160

[Close]

BLAST of Carg26786 vs. TrEMBL
Match: tr|A0A2I4GFW1|A0A2I4GFW1_9ROSI (uncharacterized protein LOC109007540 OS=Juglans regia OX=51240 GN=LOC109007540 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 51/169 (30.18%), Postives = 81/169 (47.93%), Query Frame = 0


Query: 1   MGNSCASYRAILPCCLKVDAA-HNQVEALKIVKPDGKVLGFTTPTLKPSLMDD------- 60
           MGN  A  +  +   +K+ AA H +V  L++VK DGK+L F+TP L   +M +       
Sbjct: 1   MGNCYALCKPRMGLYVKLAAAKHGRV--LQVVKMDGKILEFSTPILVKDIMVNFSGSGIG 60

Query: 61  ----------------------------SDKPSST-----------------RRVRIVLT 117
                                       S  P+ST                 +R++IV+T
Sbjct: 61  LSKDASENLSPNYELKIGKTYYMLPSLSSGSPTSTTAEISSIADKDKANIGVKRIKIVIT 120

The following BLAST results are available for this feature:

BLAST of Carg26786 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922389.1	7.3e-57	100.00	uncharacterized protein LOC111430396 [Cucurbita moschata]	[more]
XP_023551614.1	8.4e-53	94.02	uncharacterized protein LOC111809394 [Cucurbita pepo subsp. pepo]	[more]
XP_011654573.1	1.5e-25	49.41	PREDICTED: uncharacterized protein LOC105435418 [Cucumis sativus] >KGN49817.1 hy...	[more]
XP_008437666.1	1.6e-24	47.65	PREDICTED: uncharacterized protein LOC103483007 [Cucumis melo]	[more]
XP_023896768.1	1.7e-05	40.51	uncharacterized protein LOC112008673 [Quercus suber] >POE55552.1 hypothetical pr...	[more]

BLAST of Carg26786 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26786 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26786 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KN21\|A0A0A0KN21_CUCSA	9.9e-26	49.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138490 PE=4 SV=1	[more]
tr\|A0A1S3AUP7\|A0A1S3AUP7_CUCME	1.1e-24	47.65	uncharacterized protein LOC103483007 OS=Cucumis melo OX=3656 GN=LOC103483007 PE=...	[more]
tr\|A0A2N9IS98\|A0A2N9IS98_FAGSY	3.0e-06	42.11	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56209 PE=4 SV=1	[more]
tr\|A0A2P4HGZ5\|A0A2P4HGZ5_QUESU	1.1e-05	40.51	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_67896 PE=4 SV=1	[more]
tr\|A0A2I4GFW1\|A0A2I4GFW1_9ROSI	1.5e-05	30.18	uncharacterized protein LOC109007540 OS=Juglans regia OX=51240 GN=LOC109007540 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26786-RA	Carg26786-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 52..116
None	No IPR available	PANTHER	PTHR33148:SF11	SUBFAMILY NOT NAMED	coord: 52..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26786	Csa5G138490	Cucumber (Chinese Long) v2	carcuB0604
Carg26786	MELO3C005922	Melon (DHL92) v3.5.1	carmeB0580
Carg26786	ClCG01G000110	Watermelon (Charleston Gray)	carwcgB0562
Carg26786	CSPI05G02720	Wild cucumber (PI 183967)	carcpiB0610
Carg26786	Cucsa.202560	Cucumber (Gy14) v1	carcgyB0651
Carg26786	CmoCh15G010610	Cucurbita moschata (Rifu)	carcmoB0784
Carg26786	LsiUNG001580	Bottle gourd (USVL1VR-Ls)	carlsiB523
Carg26786	Cp4.1LG13g03330	Cucurbita pepo (Zucchini)	carcpeB0822
Carg26786	CsGy5G000040	Cucumber (Gy14) v2	carcgybB0578
Carg26786	MELO3C005922.2	Melon (DHL92) v3.6.1	carmedB0587
Carg26786	CsaV3_5G000050	Cucumber (Chinese Long) v3	carcucB0611
Carg26786	Cla97C01G000100	Watermelon (97103) v2	carwmbB0602

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None