Carg26695 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26695
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	HAD-superfamily hydrolase
Location	Cucurbita_argyrosperma_scaffold_442 : 58572 .. 59160 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCTTATTTAATTATATCCATGGCAACGCAAATTTTGGTTCTGCAAAATCTTGGAAATGTAGTGTAGCTTAACTTATCTTTAAATGTTACGACGTACGCCACACGTTCGAGTGCTTCTTAAAGTGGCTCAAATCTCAAATGCTGCTATGTTGGATTTCTGTCTCGTGAGATCGTGATAAATATGCTGGTGACTGTGCAGGCATGGTTTTTGGATCAATTTGGAGTTCTGCATGATGGAAAACAGCCTTATCCTGGAGCTGTTGTAGCGTGTGCGTTTCCATGCATTTGATTTAGCTCTTTGATGACTTTCCTTTCATTGACTGGGTTAGCTTCAGCACATTAGAGTTTGAGCACAACGCTAATAATTGCATTACTTCCATTTTGACGCAGTGGAAAAGTTGGCAGAATGTGGTACTAAGATGGTTATCATAAGTAATTCTTCAAGACGATCATCGACGACAATGGAAAAATTGAAGAGCCTTGGATTTGACCCCAGTCTATTTGTTGGAGCCGTTACAAGTGGAGAACTTACTCATCGGTACTTGCACAGGTTGATAATCTTTTTTAAAACTTTGTCAAGCTGCTAG

mRNA sequence

AATGCTTATTTAATTATATCCATGGCAACGCAAATTTTGGTTCTGCAAAATCTTGGAAATGTAGTGTAGCTTAACTTATCTTTAAATGTTACGACGTACGCCACACGTTCGAGTGCTTCTTAAAGTGGCTCAAATCTCAAATGCTGCTATGTTGGATTTCTGTCTCGTGAGATCGTGATAAATATGCTGGTGACTGTGCAGGCATGGTTTTTGGATCAATTTGGAGTTCTGCATGATGGAAAACAGCCTTATCCTGGAGCTGTTGTAGCGTTGGAAAAGTTGGCAGAATGTGGTACTAAGATGGTTATCATAAGTAATTCTTCAAGACGATCATCGACGACAATGGAAAAATTGAAGAGCCTTGGATTTGACCCCAGTCTATTTGTTGGAGCCGTTACAAGTGGAGAACTTACTCATCGGTACTTGCACAGGTTGATAATCTTTTTTAAAACTTTGTCAAGCTGCTAG

Coding sequence (CDS)

ATGCTGGTGACTGTGCAGGCATGGTTTTTGGATCAATTTGGAGTTCTGCATGATGGAAAACAGCCTTATCCTGGAGCTGTTGTAGCGTTGGAAAAGTTGGCAGAATGTGGTACTAAGATGGTTATCATAAGTAATTCTTCAAGACGATCATCGACGACAATGGAAAAATTGAAGAGCCTTGGATTTGACCCCAGTCTATTTGTTGGAGCCGTTACAAGTGGAGAACTTACTCATCGGTACTTGCACAGGTTGATAATCTTTTTTAAAACTTTGTCAAGCTGCTAG

Protein sequence

MLVTVQAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPSLFVGAVTSGELTHRYLHRLIIFFKTLSSC

Homology

[Close]

BLAST of Carg26695 vs. NCBI nr
Match: XP_022951290.1 (pyridoxal phosphate phosphatase [Cucurbita moschata] >XP_022951291.1 pyridoxal phosphate phosphatase [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 4.4e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS
Sbjct: 31  KAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 90

Query: 66  LFVGAVTSGELTHRYLHR 84
           LFVGAVTSGELTHRYLHR
Sbjct: 91  LFVGAVTSGELTHRYLHR 108

[Close]

BLAST of Carg26695 vs. NCBI nr
Match: XP_023002867.1 (pyridoxal phosphate phosphatase [Cucurbita maxima] >XP_023002868.1 pyridoxal phosphate phosphatase [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 5.7e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS
Sbjct: 31  KAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 90

Query: 66  LFVGAVTSGELTHRYLHR 84
           LFVGA+TSGELTHRYLHR
Sbjct: 91  LFVGAITSGELTHRYLHR 108

[Close]

BLAST of Carg26695 vs. NCBI nr
Match: XP_023537475.1 (pyridoxal phosphate phosphatase [Cucurbita pepo subsp. pepo] >XP_023537476.1 pyridoxal phosphate phosphatase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 5.7e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS
Sbjct: 31  KAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 90

Query: 66  LFVGAVTSGELTHRYLHR 84
           LFVGA+TSGELTHRYLHR
Sbjct: 91  LFVGAITSGELTHRYLHR 108

[Close]

BLAST of Carg26695 vs. NCBI nr
Match: XP_004144188.1 (PREDICTED: pyridoxal phosphate phosphatase [Cucumis sativus] >KGN47625.1 hypothetical protein Csa_6G365740 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGAV+ALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS
Sbjct: 31  KAWFLDQFGVLHDGKQPYPGAVLALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 90

Query: 66  LFVGAVTSGELTHRYLHR 84
           LFVGA+TSGELTHRYL R
Sbjct: 91  LFVGAITSGELTHRYLQR 108

[Close]

BLAST of Carg26695 vs. NCBI nr
Match: XP_016899901.1 (PREDICTED: pyridoxal phosphate phosphatase isoform X2 [Cucumis melo] >XP_016899902.1 PREDICTED: pyridoxal phosphate phosphatase isoform X2 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-34
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MLVTVQAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSL 60
          MLV  QAWFLDQFGVLHDGKQPYPGAV+ALEKLAE GTKMVIISNSSRRSSTTMEKLKSL
Sbjct: 1  MLVASQAWFLDQFGVLHDGKQPYPGAVLALEKLAERGTKMVIISNSSRRSSTTMEKLKSL 60

Query: 61 GFDPSLFVGAVTSGELTHRYLHR 84
          GFDPSLF+GA+TSGELTH YL R
Sbjct: 61 GFDPSLFIGAITSGELTHHYLQR 83

[Close]

BLAST of Carg26695 vs. TAIR10
Match: AT5G10460.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 6.3e-29
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AW LDQ+GVLHDGK+PYPGA+  L+ LA  G K+VIISNSSRR+STTMEKLK LGFDPS
Sbjct: 24  KAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAKIVIISNSSRRASTTMEKLKGLGFDPS 83

Query: 66  LFVGAVTSGELTHRYLHR 84
            F GA+TSGELTH+ L R
Sbjct: 84  FFTGAITSGELTHQSLQR 101

[Close]

BLAST of Carg26695 vs. TrEMBL
Match: tr|A0A0A0KD58|A0A0A0KD58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365740 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGAV+ALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS
Sbjct: 31  KAWFLDQFGVLHDGKQPYPGAVLALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 90

Query: 66  LFVGAVTSGELTHRYLHR 84
           LFVGA+TSGELTHRYL R
Sbjct: 91  LFVGAITSGELTHRYLQR 108

[Close]

BLAST of Carg26695 vs. TrEMBL
Match: tr|A0A1S4DV88|A0A1S4DV88_CUCME (pyridoxal phosphate phosphatase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488490 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MLVTVQAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSL 60
          MLV  QAWFLDQFGVLHDGKQPYPGAV+ALEKLAE GTKMVIISNSSRRSSTTMEKLKSL
Sbjct: 1  MLVASQAWFLDQFGVLHDGKQPYPGAVLALEKLAERGTKMVIISNSSRRSSTTMEKLKSL 60

Query: 61 GFDPSLFVGAVTSGELTHRYLHR 84
          GFDPSLF+GA+TSGELTH YL R
Sbjct: 61 GFDPSLFIGAITSGELTHHYLQR 83

[Close]

BLAST of Carg26695 vs. TrEMBL
Match: tr|A0A1S3BCV5|A0A1S3BCV5_CUCME (pyridoxal phosphate phosphatase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488490 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.7e-33
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGAV+ALEKLAE GTKMVIISNSSRRSSTTMEKLKSLGFDPS
Sbjct: 31  KAWFLDQFGVLHDGKQPYPGAVLALEKLAERGTKMVIISNSSRRSSTTMEKLKSLGFDPS 90

Query: 66  LFVGAVTSGELTHRYLHR 84
           LF+GA+TSGELTH YL R
Sbjct: 91  LFIGAITSGELTHHYLQR 108

[Close]

BLAST of Carg26695 vs. TrEMBL
Match: tr|A0A1U8EUI6|A0A1U8EUI6_CAPAN (uncharacterized protein LOC107850690 OS=Capsicum annuum OX=4072 GN=LOC107850690 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.8e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGA+ ALEKLA CG KMVIISNSSRR+S TMEKL+SLGFDPS
Sbjct: 34  KAWFLDQFGVLHDGKQPYPGAISALEKLATCGAKMVIISNSSRRASITMEKLRSLGFDPS 93

Query: 66  LFVGAVTSGELTHRYLHR 84
           LFVGA+TSGELTH+YL R
Sbjct: 94  LFVGAITSGELTHQYLQR 111

[Close]

BLAST of Carg26695 vs. TrEMBL
Match: tr|A0A1U8FIC6|A0A1U8FIC6_CAPAN (uncharacterized protein LOC107855561 OS=Capsicum annuum OX=4072 GN=LOC107855561 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.8e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 6   QAWFLDQFGVLHDGKQPYPGAVVALEKLAECGTKMVIISNSSRRSSTTMEKLKSLGFDPS 65
           +AWFLDQFGVLHDGKQPYPGA+ ALEKLA CG KMVIISNSSRR+S TMEKL+SLGFDPS
Sbjct: 34  KAWFLDQFGVLHDGKQPYPGAISALEKLATCGAKMVIISNSSRRASITMEKLRSLGFDPS 93

Query: 66  LFVGAVTSGELTHRYLHR 84
           LFVGA+TSGELTH+YL R
Sbjct: 94  LFVGAITSGELTHQYLQR 111

The following BLAST results are available for this feature:

BLAST of Carg26695 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951290.1	4.4e-36	98.72	pyridoxal phosphate phosphatase [Cucurbita moschata] >XP_022951291.1 pyridoxal p...	[more]
XP_023002867.1	5.7e-36	97.44	pyridoxal phosphate phosphatase [Cucurbita maxima] >XP_023002868.1 pyridoxal pho...	[more]
XP_023537475.1	5.7e-36	97.44	pyridoxal phosphate phosphatase [Cucurbita pepo subsp. pepo] >XP_023537476.1 pyr...	[more]
XP_004144188.1	1.1e-34	94.87	PREDICTED: pyridoxal phosphate phosphatase [Cucumis sativus] >KGN47625.1 hypothe...	[more]
XP_016899901.1	2.4e-34	90.36	PREDICTED: pyridoxal phosphate phosphatase isoform X2 [Cucumis melo] >XP_0168999...	[more]

BLAST of Carg26695 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10460.1	6.3e-29	73.08	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	[more]

BLAST of Carg26695 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26695 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KD58\|A0A0A0KD58_CUCSA	7.2e-35	94.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365740 PE=4 SV=1	[more]
tr\|A0A1S4DV88\|A0A1S4DV88_CUCME	1.6e-34	90.36	pyridoxal phosphate phosphatase isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034884...	[more]
tr\|A0A1S3BCV5\|A0A1S3BCV5_CUCME	8.7e-33	91.03	pyridoxal phosphate phosphatase isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034884...	[more]
tr\|A0A1U8EUI6\|A0A1U8EUI6_CAPAN	2.8e-31	85.90	uncharacterized protein LOC107850690 OS=Capsicum annuum OX=4072 GN=LOC107850690 ...	[more]
tr\|A0A1U8FIC6\|A0A1U8FIC6_CAPAN	2.8e-31	85.90	uncharacterized protein LOC107855561 OS=Capsicum annuum OX=4072 GN=LOC107855561 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036412	HAD-like_sf
IPR006357	HAD-SF_hydro_IIA
IPR023214	HAD_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26695-RA	Carg26695-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023214	HAD superfamily	GENE3D	G3DSA:3.40.50.1000		coord: 9..83 e-value: 4.9E-16 score: 60.8
IPR006357	HAD-superfamily hydrolase, subfamily IIA	PFAM	PF13344	Hydrolase_6	coord: 8..83 e-value: 6.7E-15 score: 55.0
None	No IPR available	PANTHER	PTHR19288	4-NITROPHENYLPHOSPHATASE-RELATED	coord: 5..84
None	No IPR available	PANTHER	PTHR19288:SF46	SUBFAMILY NOT NAMED	coord: 5..84
IPR036412	HAD-like superfamily	SUPERFAMILY	SSF56784	HAD-like	coord: 5..87

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26695	Silver-seed gourd	carcarB007
Carg26695	Cucumber (Gy14) v2	carcgybB0009
Carg26695	Cucumber (Gy14) v1	carcgyB0009
Carg26695	Cucurbita maxima (Rimu)	carcmaB0016
Carg26695	Cucurbita maxima (Rimu)	carcmaB0017
Carg26695	Cucurbita moschata (Rifu)	carcmoB0016
Carg26695	Cucurbita moschata (Rifu)	carcmoB0017
Carg26695	Cucurbita pepo (Zucchini)	carcpeB0014
Carg26695	Cucurbita pepo (Zucchini)	carcpeB0015
Carg26695	Wild cucumber (PI 183967)	carcpiB0010
Carg26695	Cucumber (Chinese Long) v2	carcuB0010
Carg26695	Cucumber (Chinese Long) v3	carcucB0010
Carg26695	Bottle gourd (USVL1VR-Ls)	carlsiB009
Carg26695	Melon (DHL92) v3.5.1	carmeB0008
Carg26695	Melon (DHL92) v3.6.1	carmedB0009
Carg26695	Watermelon (Charleston Gray)	carwcgB0010
Carg26695	Watermelon (97103) v1	carwmB0012
Carg26695	Watermelon (97103) v2	carwmbB0009
Carg26695	Wax gourd	carwgoB0011