Carg26611 (gene) Silver-seed gourd

Overview
NameCarg26611
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionImportin subunit beta-1
LocationCucurbita_argyrosperma_scaffold_261 : 309028 .. 309990 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTCCAATCCCTTCAATTTTCCCAATCCAGGTATTGATTTCTCTCCCATCTTCGAAAATCCCCTTCTGTTTATGTTCATTGGGTTTCATTTTGCTTGCTGATTTCTTTTCCCTTTTGATCTGTGCATTTTCTATTTGATTTTCCCCGATTCATCCATTTTCTGTTTTGTATCTTCATTAGGATCCAGTTCTTGATGTTTTTTTGTATTGCCTTTTTAGTATCAGTGTTTTTTTTTTTTTTTTTATTTGTTTCATTTTTTTGAAGTGGAACGAGTATGTTTATAGTGGTCTGTGTAGCATCGCATTTAAAGCTTATTTCGATCCTGTGAAAATTTGTTCTCATTTTTATTTCTTATGGTTTGAACCGGAAGATATCGATATCGACATAGACGGTTGGTCCATATGACTTTAAGGGGCTGGGTTCTCGATAGATCACCTGCAGTTTAATTAGTTTTATTAGTTTCTTTTGGTTATGCTGTTGAGATCTGGGTTTTTGCTCTTTGTTCCTGGGTTTTGCGATTGCTATAGCTAGGTTTCGTTTTTCCATTATTATTTCTGATTGAGCTTTTTGGGATGGGATGAATATTTTCTTAGTAAATGAATTTAGTTTCCTCAATTAAGAATCTGTTGACCGTTAATTTGGAGTTTCAGGTGAAACATGGCATTGGAGGTTACGCAGGTTCTTCTGAATGCACAGTCAATAGATGCAAATGTGAGGAAGCAGGCAGAGGATAGTTTAAGGCAATTTCAGGAGCAAAACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGCAATGAGGAAAAGCCAGTTGATAGTCGTAAATTAGCCCGGTGTACTGAGGTGTAG

mRNA sequence

CCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTCCAATCCCTTCAATTTTCCCAATCCAGGTTCTTCTGAATGCACAGTCAATAGATGCAAATGTGAGGAAGCAGGCAGAGGATAGTTTAAGGCAATTTCAGGAGCAAAACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGCAATGAGGAAAAGCCAGTTGATAGTCGTAAATTAGCCCGGTGTACTGAGGTGTAG

Coding sequence (CDS)

CCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTCCAATCCCTTCAATTTTCCCAATCCAGGTTCTTCTGAATGCACAGTCAATAGATGCAAATGTGAGGAAGCAGGCAGAGGATAGTTTAAGGCAATTTCAGGAGCAAAACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGCAATGAGGAAAAGCCAGTTGATAGTCGTAAATTAGCCCGGTGTACTGAGGTGTAG

Protein sequence

PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLARCTEV
Homology
[Close]
BLAST of Carg26611 vs. NCBI nr
Match: XP_022922215.1 (importin subunit beta-1-like [Cucurbita moschata] >XP_022972953.1 importin subunit beta-1-like [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. NCBI nr
Match: XP_023550103.1 (importin subunit beta-1-like [Cucurbita pepo subsp. pepo] >XP_023550104.1 importin subunit beta-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. NCBI nr
Match: XP_022137873.1 (importin subunit beta-1-like [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDATVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. NCBI nr
Match: XP_022995901.1 (importin subunit beta-1-like [Cucurbita maxima] >XP_022995902.1 importin subunit beta-1-like [Cucurbita maxima])

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLP FLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDATVRKQAEDSLRQFQEQNLPIFLLSLSGELGNEEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. NCBI nr
Match: XP_022137909.1 (importin subunit beta-1 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQ+IDA+VRKQAEDSLRQFQEQNLPSFLLSLSGEL NEEKPVDSRKLA
Sbjct: 7   QVLLNAQAIDASVRKQAEDSLRQFQEQNLPSFLLSLSGELANEEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. TAIR10
Match: AT5G53480.1 (ARM repeat superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 8.0e-17
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q+L+NAQSID  VRK AE+SL+QFQEQNL  FLLSL+GEL N+EKPVDSRKLA
Sbjct: 7   QLLINAQSIDGTVRKHAEESLKQFQEQNLAGFLLSLAGELANDEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. TAIR10
Match: AT3G08943.1 (ARM repeat superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-13
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q LL AQS DA VR +AE SLRQFQEQNLP FLLSLS EL N +KP +SR+LA
Sbjct: 7   QFLLAAQSADARVRTEAEASLRQFQEQNLPLFLLSLSFELENNDKPAESRRLA 59

[Close]
BLAST of Carg26611 vs. TAIR10
Match: AT3G08947.1 (ARM repeat superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 9.2e-13
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q LL AQS DA VR +AE +LRQFQEQNLP FL+SLS EL N +KP +SR+LA
Sbjct: 7   QFLLAAQSADARVRTEAEGNLRQFQEQNLPLFLVSLSFELANNDKPAESRRLA 59

[Close]
BLAST of Carg26611 vs. Swiss-Prot
Match: sp|Q9FJD4|IMB1_ARATH (Importin subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KPNB1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q+L+NAQSID  VRK AE+SL+QFQEQNL  FLLSL+GEL N+EKPVDSRKLA
Sbjct: 7   QLLINAQSIDGTVRKHAEESLKQFQEQNLAGFLLSLAGELANDEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. TrEMBL
Match: tr|A0A0A0KJT4|A0A0A0KJT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139310 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-17
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLPSFLLSLS ELG+EEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDATVRKQAEDSLRQFQEQNLPSFLLSLSNELGSEEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. TrEMBL
Match: tr|A0A0A0KQ48|A0A0A0KQ48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139290 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-17
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLPSFLLSLS ELG+EEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDATVRKQAEDSLRQFQEQNLPSFLLSLSNELGSEEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. TrEMBL
Match: tr|B9SJT7|B9SJT7_RICCO (Importin beta-1, putative OS=Ricinus communis OX=3988 GN=RCOM_0736490 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSID NVRK AE+SL+QFQEQNLPSFLLSLSGEL N+EKPVDSRKLA
Sbjct: 7   QVLLNAQSIDGNVRKHAEESLKQFQEQNLPSFLLSLSGELANDEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. TrEMBL
Match: tr|B9I1Y1|B9I1Y1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G017500v3 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSID NVRK AE+SL+QFQEQNLPSFLLSLSGEL N+EKPVDSRKLA
Sbjct: 7   QVLLNAQSIDGNVRKHAEESLKQFQEQNLPSFLLSLSGELANDEKPVDSRKLA 59

[Close]
BLAST of Carg26611 vs. TrEMBL
Match: tr|A0A2N9IVW4|A0A2N9IVW4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56161 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.2e-16
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q+LLNAQSID NVRK AEDSL+QFQEQNLPSFLLSLSGEL N++KPV+SRKLA
Sbjct: 7   QILLNAQSIDGNVRKHAEDSLKQFQEQNLPSFLLSLSGELANDDKPVESRKLA 59

The following BLAST results are available for this feature:
BLAST of Carg26611 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922215.15.4e-19100.00importin subunit beta-1-like [Cucurbita moschata] >XP_022972953.1 importin subun... [more]
XP_023550103.15.4e-19100.00importin subunit beta-1-like [Cucurbita pepo subsp. pepo] >XP_023550104.1 import... [more]
XP_022137873.12.7e-1898.11importin subunit beta-1-like [Momordica charantia][more]
XP_022995901.11.3e-1796.23importin subunit beta-1-like [Cucurbita maxima] >XP_022995902.1 importin subunit... [more]
XP_022137909.12.3e-1794.34importin subunit beta-1 [Momordica charantia][more]
BLAST of Carg26611 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53480.18.0e-1777.36ARM repeat superfamily protein[more]
AT3G08943.14.1e-1371.70ARM repeat superfamily protein[more]
AT3G08947.19.2e-1367.92ARM repeat superfamily protein[more]
BLAST of Carg26611 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FJD4|IMB1_ARATH1.4e-1577.36Importin subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KPNB1 PE=1 SV=1[more]
BLAST of Carg26611 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJT4|A0A0A0KJT4_CUCSA3.3e-1794.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139310 PE=4 SV=1[more]
tr|A0A0A0KQ48|A0A0A0KQ48_CUCSA3.3e-1794.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139290 PE=4 SV=1[more]
tr|B9SJT7|B9SJT7_RICCO2.8e-1688.68Importin beta-1, putative OS=Ricinus communis OX=3988 GN=RCOM_0736490 PE=4 SV=1[more]
tr|B9I1Y1|B9I1Y1_POPTR2.8e-1688.68Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G017500v3 PE=... [more]
tr|A0A2N9IVW4|A0A2N9IVW4_FAGSY8.2e-1684.91Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56161 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008565protein transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006913nucleocytoplasmic transport
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR027140KPNB1_plant
IPR011989ARM-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0015031 protein transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0008565 protein transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26611-RACarg26611-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 45..102
e-value: 1.7E-11
score: 44.9
NoneNo IPR availablePANTHERPTHR10527IMPORTIN BETAcoord: 46..99
IPR027140Importin subunit beta-1, plantsPANTHERPTHR10527:SF44IMPORTIN SUBUNIT BETA-1coord: 46..99
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 47..99

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg26611Bottle gourd (USVL1VR-Ls)carlsiB246
Carg26611Watermelon (Charleston Gray)carwcgB0265
Carg26611Watermelon (97103) v1carwmB0264
Carg26611Watermelon (97103) v2carwmbB0281
Carg26611Wax gourdcarwgoB0357
Carg26611Silver-seed gourdcarcarB313
Carg26611Cucumber (Gy14) v2carcgybB0288
Carg26611Cucurbita maxima (Rimu)carcmaB0379
Carg26611Cucurbita moschata (Rifu)carcmoB0376
Carg26611Cucurbita moschata (Rifu)carcmoB0377
Carg26611Cucurbita pepo (Zucchini)carcpeB0384
Carg26611Wild cucumber (PI 183967)carcpiB0305
Carg26611Cucumber (Chinese Long) v2carcuB0301
Carg26611Cucumber (Chinese Long) v3carcucB0304