Carg26519 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26519
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pollen-specific leucine-rich repeat extensin-like protein 1-like
Location	Cucurbita_argyrosperma_scaffold_255 : 172067 .. 173108 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCATCCATGGCGGACGCCAAGGTCATTTCTCTCTGTTTTTGGTTTGGTTTTTGAGTTTCTTGTCTCTGTTTTGCTGATTCTGAGTGACTTTAATTGTTTATGCAGAAGACTGTGGTTATGATGCTTAAAGTGGATTTGCAGTGTGATCGATGCTACAAGAAAGTGAAGAAAGTTCTCTGCAAATTTCCTCGTCAGTTCTTTCTCCATTTCTACTGTTCTTCTGTTCTTTACTCTGTTTTTCCAAATTGATTTTGATTCTTTGAACGCCAGAAATTCGAGACCAGATTTATGATGAGAAACAGAATCTTGTGATTATCAAAGTGGTTTGTTGTAATCCTGAGAAGCTTAGAGATAAAATTTGTTGCAAGGGCTGTGGTGTTATTAAGAGCATTGAAATCAAGCCCGCCGATCCTCCTCCGCCCAAAAAGCCTGATCCTCCTCCGCCCAAAAAAGCCGATCCTCCTCCGCCGGCTAAGCCTGACCCTCCTCCCCCTAAAAAAGCCGACCCACCACCGCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCACCACCGAAAAAGGCCGACCCACCGCCTCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCGCCTCCAAAGGCCGACCCTCCCCCACCCAAAAAGGCCGACCCTCCCCACACCCAAAAAGGCCGACCCACCGCCGCCAAAAAGGCCGACCCACCCCCGGCACCCAAGGCCGACCCACCGCCTCCGAAAAAGGTAGACCCTGTGCCACCGGCTCAACCCGAACCGTTCCCGGTTAACATATGCGTGCCGGTTCCCGGATACCCACCGGCTTACCCGATTGGGATGTGCTGTAGTCAGTGCTATGAAGGGCAGGGTGGGGGCCCATGTTACAGTGGGTTTGGTAGGCCCGGCCCATGTTGCGATGGGTGCGCTTCTGGAAGGCCCATTTACGACAGTTACGGCGGAGGGAGGCCCTGTTATGTTAGCCACTGTGAATACCTCAACGAAGAAAATGCATCCGGGTGCAGTGTTATGTGA

mRNA sequence

ACTCATCCATGGCGGACGCCAAGAAGACTGTGGTTATGATGCTTAAAGTGGATTTGCAGTGTGATCGATGCTACAAGAAAGTGAAGAAAGTTCTCTGCAAATTTCCTCAAATTCGAGACCAGATTTATGATGAGAAACAGAATCTTGTGATTATCAAAGTGGTTTGTTGTAATCCTGAGAAGCTTAGAGATAAAATTTGTTGCAAGGGCTGTGGTGTTATTAAGAGCATTGAAATCAAGCCCGCCGATCCTCCTCCGCCCAAAAAGCCTGATCCTCCTCCGCCCAAAAAAGCCGATCCTCCTCCGCCGGCTAAGCCTGACCCTCCTCCCCCTAAAAAAGCCGACCCACCACCGCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCACCACCGAAAAAGGCCGACCCACCGCCTCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCGCCTCCAAAGGCCGACCCTCCCCCACCCAAAAAGGCCGACCCTCCCCACACCCAAAAAGGCCGACCCACCGCCGCCAAAAAGGCCGACCCACCCCCGGCACCCAAGGCCGACCCACCGCCTCCGAAAAAGGTAGACCCTGTGCCACCGGCTCAACCCGAACCGTTCCCGGTTAACATATGCGTGCCGGTTCCCGGATACCCACCGGCTTACCCGATTGGGATGTGCTGTAGTCAGTGCTATGAAGGGCAGGGTGGGGGCCCATGTTACAGTGGGTTTGGTAGGCCCGGCCCATGTTGCGATGGGTGCGCTTCTGGAAGGCCCATTTACGACAGTTACGGCGGAGGGAGGCCCTGTTATGTTAGCCACTGTGAATACCTCAACGAAGAAAATGCATCCGGGTGCAGTGTTATGTGA

Coding sequence (CDS)

ATGGCGGACGCCAAGAAGACTGTGGTTATGATGCTTAAAGTGGATTTGCAGTGTGATCGATGCTACAAGAAAGTGAAGAAAGTTCTCTGCAAATTTCCTCAAATTCGAGACCAGATTTATGATGAGAAACAGAATCTTGTGATTATCAAAGTGGTTTGTTGTAATCCTGAGAAGCTTAGAGATAAAATTTGTTGCAAGGGCTGTGGTGTTATTAAGAGCATTGAAATCAAGCCCGCCGATCCTCCTCCGCCCAAAAAGCCTGATCCTCCTCCGCCCAAAAAAGCCGATCCTCCTCCGCCGGCTAAGCCTGACCCTCCTCCCCCTAAAAAAGCCGACCCACCACCGCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCACCACCGAAAAAGGCCGACCCACCGCCTCCCAAGGCCGACCCTCCGCCACCGAAAAAGGCCGACCCACCGCCTCCAAAGGCCGACCCTCCCCCACCCAAAAAGGCCGACCCTCCCCACACCCAAAAAGGCCGACCCACCGCCGCCAAAAAGGCCGACCCACCCCCGGCACCCAAGGCCGACCCACCGCCTCCGAAAAAGGTAGACCCTGTGCCACCGGCTCAACCCGAACCGTTCCCGGTTAACATATGCGTGCCGGTTCCCGGATACCCACCGGCTTACCCGATTGGGATGTGCTGTAGTCAGTGCTATGAAGGGCAGGGTGGGGGCCCATGTTACAGTGGGTTTGGTAGGCCCGGCCCATGTTGCGATGGGTGCGCTTCTGGAAGGCCCATTTACGACAGTTACGGCGGAGGGAGGCCCTGTTATGTTAGCCACTGTGAATACCTCAACGAAGAAAATGCATCCGGGTGCAGTGTTATGTGA

Protein sequence

MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKICCKGCGVIKSIEIKPADPPPPKKPDPPPPKKADPPPPAKPDPPPPKKADPPPPKADPPPPKKADPPPPKKADPPPPKADPPPPKKADPPPPKADPPPPKKADPPHTQKGRPTAAKKADPPPAPKADPPPPKKVDPVPPAQPEPFPVNICVPVPGYPPAYPIGMCCSQCYEGQGGGPCYSGFGRPGPCCDGCASGRPIYDSYGGGRPCYVSHCEYLNEENASGCSVM

Homology

[Close]

BLAST of Carg26519 vs. NCBI nr
Match: XP_022927595.1 (protein PYRICULARIA ORYZAE RESISTANCE 21-like isoform X10 [Cucurbita moschata])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 274/289 (94.81%), Postives = 274/289 (94.81%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DKICCKGCGVIKSIEIKPADPPPP               XXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPP---------------XXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYEGQGGGPC 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYEGQGGGPC
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYEGQGGGPC 240

Query: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 290
           YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM
Sbjct: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 274

[Close]

BLAST of Carg26519 vs. NCBI nr
Match: XP_022927594.1 (leucine-rich repeat extensin-like protein 3 isoform X9 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 282/289 (97.58%), Postives = 282/289 (97.58%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DKICCKGCGVIKSIEIKPADPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYEGQGGGPC 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       YPPAYPIGMCCSQCYEGQGGGPC
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPPAYPIGMCCSQCYEGQGGGPC 240

Query: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 290
           YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM
Sbjct: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 289

[Close]

BLAST of Carg26519 vs. NCBI nr
Match: XP_023520687.1 (leucine-rich repeat extensin-like protein 3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 274/289 (94.81%), Postives = 275/289 (95.16%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVM+LKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMLLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DKICCKGCGVIKSIEIKPADPPPP        XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPP--------XXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYEGQGGGPC 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      GYPPAYPIGMCCSQCYEGQGGGPC
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYPPAYPIGMCCSQCYEGQGGGPC 240

Query: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 290
           YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM
Sbjct: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 281

[Close]

BLAST of Carg26519 vs. NCBI nr
Match: XP_022927597.1 (leucine-rich repeat extensin-like protein 3 isoform X11 [Cucurbita moschata])

HSP 1 Score: 211.5 bits (537), Expect = 3.9e-51
Identity = 265/289 (91.70%), Postives = 265/289 (91.70%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DKICCKGCGVIKSIEIKPADPPPP                XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPP----------------XXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYEGQGGGPC 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       YPPAYPIGMCCSQCYEGQGGGPC
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPPAYPIGMCCSQCYEGQGGGPC 240

Query: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 290
           YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM
Sbjct: 241 YSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 273

[Close]

BLAST of Carg26519 vs. NCBI nr
Match: XP_022973157.1 (leucine-rich repeat extensin-like protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 9.6e-50
Identity = 281/295 (95.25%), Postives = 281/295 (95.25%), Query Frame = 0


Query: 1   MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
           MADAKK VVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR
Sbjct: 1   MADAKKVVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60

Query: 61  DKICCKGCGVIKSIEIKPADPPP------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DKICCKGCGVIKSIEIKPADPPP       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DKICCKGCGVIKSIEIKPADPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYEG 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      GYPPAYPIGMCCSQCYEG
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYPPAYPIGMCCSQCYEG 240

Query: 241 QGGGPCYSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 290
           QGGGPCYSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM
Sbjct: 241 QGGGPCYSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 295

[Close]

BLAST of Carg26519 vs. TAIR10
Match: AT4G16380.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-23
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 5  KKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKIC 64
          +K  +M LKVDL C +CYKKVKKVLCKFPQIRDQ++DEK N+VIIKVVCC+PE++ DK+C
Sbjct: 7  EKVTMMKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDKLC 66

Query: 65 CKGCGVIKS 74
           KG G IK+
Sbjct: 67 SKGGGSIKT 75

[Close]

BLAST of Carg26519 vs. TAIR10
Match: AT1G51090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-20
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 4  AKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKI 63
          A+K V+M LKVDL C +CYKKVKK + KFPQI D+++DEK N +IIKVVC +PE+L +K+
Sbjct: 2  AEKVVMMKLKVDLNCSKCYKKVKKAIRKFPQITDELFDEKSNTIIIKVVCYDPERLMNKL 61

Query: 64 CCKGCGVIKSIEIKPADPP 83
          C KG G IKSI I   +PP
Sbjct: 62 CYKGDGSIKSIVI--LEPP 78

[Close]

BLAST of Carg26519 vs. TAIR10
Match: AT1G49420.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-13
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 5  KKTVVMMLKVD-LQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKI 64
          +K   M LK + L  ++ + KVKK L   PQ+RDQ ++E+ N V IKVVCC+PEK+ DK+
Sbjct: 7  EKVTWMKLKTEPLSNEKNFSKVKKALSSIPQVRDQKFEEETNTVTIKVVCCSPEKVMDKL 66

Query: 65 CCKGCGVIKSIE-IKPA 80
          C KG G IK IE I PA
Sbjct: 67 CSKGRGAIKLIETIDPA 83

[Close]

BLAST of Carg26519 vs. Swiss-Prot
Match: sp|A2XT03|PI21_ORYSI (Protein PYRICULARIA ORYZAE RESISTANCE 21 OS=Oryza sativa subsp. indica OX=39946 GN=PI21 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.1e-04
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 9  VMMLKVDLQCDRCYKKVKKVLCKFPQ---IRDQIYDEKQNLVIIKVVCCNPEKLRDKICC 68
          ++++ VDLQC RC  K++KVL    +   I    YD K N VI++    +PEKL  KI C
Sbjct: 3  ILVISVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGK-FDPEKLCKKIWC 62

Query: 69 KGCGVIKSIEIKPADPPP 84
          K   +IK I I    PPP
Sbjct: 63 KAGKIIKEILIVDVWPPP 79

[Close]

BLAST of Carg26519 vs. Swiss-Prot
Match: sp|Q7XL73|PI21_ORYSJ (Protein PYRICULARIA ORYZAE RESISTANCE 21 OS=Oryza sativa subsp. japonica OX=39947 GN=PI21 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.9e-04
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 9  VMMLKVDLQCDRCYKKVKKVLCKFPQ---IRDQIYDEKQNLVIIKVVCCNPEKLRDKICC 68
          ++++ VDLQC RC  K++KVL    +   I    YD K N VI++    +PEKL  KI C
Sbjct: 3  ILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGK-FDPEKLCKKIWC 62

Query: 69 KGCGVIKSIEIKPADPPP 84
          K   +IK I I    PPP
Sbjct: 63 KAGKIIKEILIVDVWPPP 79

[Close]

BLAST of Carg26519 vs. TrEMBL
Match: tr|A0A0A0LTA1|A0A0A0LTA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172590 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 3  DAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDK 62
          D KK VVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDK
Sbjct: 4  DGKKVVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDK 63

Query: 63 ICCKGCGVIKSIEIKPADPPPP 85
          ICCKGCGVIKSIEIK  +PP P
Sbjct: 64 ICCKGCGVIKSIEIKEPEPPKP 85

[Close]

BLAST of Carg26519 vs. TrEMBL
Match: tr|A0A1S3CL41|A0A1S3CL41_CUCME (leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103502210 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.9e-35
Identity = 258/296 (87.16%), Postives = 261/296 (88.18%), Query Frame = 0


Query: 3   DAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDK 62
           D KK VVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDK
Sbjct: 4   DGKKVVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDK 63

Query: 63  ICCKGCGVIKSIEIKPADPP---------PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           ICCKGCGVIKSIEIK  +PP           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 64  ICCKGCGVIKSIEIKEPEPPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICVPVPGYPPAYPIGMCCSQCYE 242
           XXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXX              G+CC QCYE
Sbjct: 184 XXXXXXXXXXXXXVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCCRQCYE 243

Query: 243 GQGGGPCYSGFGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCSVM 290
           G+GGGPCYSGFG  XXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGC VM
Sbjct: 244 GRGGGPCYSGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYLNEENASGCVVM 299

[Close]

BLAST of Carg26519 vs. TrEMBL
Match: tr|A0A1S2YNR7|A0A1S2YNR7_CICAR (proline-rich protein 2 OS=Cicer arietinum OX=3827 GN=LOC101498654 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.6e-29
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
          MA+  K  +M LKVDLQCD+CYKKVKKVLCKFPQIRDQ+YDEK N+V I VVCC+PEK+R
Sbjct: 1  MAEKVKVTIMKLKVDLQCDKCYKKVKKVLCKFPQIRDQVYDEKNNIVTITVVCCSPEKIR 60

Query: 61 DKICCKGCGVIKSIEIKPADPPPP 85
          DK+CCKGCG IKSIEI   +PPPP
Sbjct: 61 DKLCCKGCGAIKSIEI--VEPPPP 82

[Close]

BLAST of Carg26519 vs. TrEMBL
Match: tr|A0A0B0MHK6|A0A0B0MHK6_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_21782 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 4  AKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKI 63
          A+K  VM+LKVDLQC RCYKKVKKVLCKFPQIRDQIYDEK N V I VVCCNPEKLRDKI
Sbjct: 2  AEKVTVMVLKVDLQCWRCYKKVKKVLCKFPQIRDQIYDEKTNTVTITVVCCNPEKLRDKI 61

Query: 64 CCKGCGVIKSIEIKPADPPPP 85
          CCKG G IKSIEIKP  PPPP
Sbjct: 62 CCKGAGSIKSIEIKP--PPPP 80

[Close]

BLAST of Carg26519 vs. TrEMBL
Match: tr|M5WHC4|M5WHC4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G004900 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-28
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MADAKKTVVMMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLR 60
          MA+ +K  +M+LKVDLQC +CYKKVKKVLCKFPQIRDQIYDEKQN V+IKVVCC+PEK+R
Sbjct: 1  MAEKEKETIMVLKVDLQCHKCYKKVKKVLCKFPQIRDQIYDEKQNQVVIKVVCCSPEKIR 60

Query: 61 DKICCKGCGVIKSIEIKPAD---PPPP 85
          D+ICCKG G IK IEIK  +   PPPP
Sbjct: 61 DRICCKGGGAIKGIEIKEPEKPKPPPP 87

The following BLAST results are available for this feature:

BLAST of Carg26519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927595.1	1.1e-56	94.81	protein PYRICULARIA ORYZAE RESISTANCE 21-like isoform X10 [Cucurbita moschata]	[more]
XP_022927594.1	2.1e-52	97.58	leucine-rich repeat extensin-like protein 3 isoform X9 [Cucurbita moschata]	[more]
XP_023520687.1	1.3e-51	94.81	leucine-rich repeat extensin-like protein 3 isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022927597.1	3.9e-51	91.70	leucine-rich repeat extensin-like protein 3 isoform X11 [Cucurbita moschata]	[more]
XP_022973157.1	9.6e-50	95.25	leucine-rich repeat extensin-like protein 3 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg26519 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16380.1	2.5e-23	69.57	Heavy metal transport/detoxification superfamily protein	[more]
AT1G51090.1	1.9e-20	60.76	Heavy metal transport/detoxification superfamily protein	[more]
AT1G49420.1	3.9e-13	51.95	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of Carg26519 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2XT03\|PI21_ORYSI	1.1e-04	42.31	Protein PYRICULARIA ORYZAE RESISTANCE 21 OS=Oryza sativa subsp. indica OX=39946 ...	[more]
sp\|Q7XL73\|PI21_ORYSJ	1.9e-04	42.31	Protein PYRICULARIA ORYZAE RESISTANCE 21 OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Carg26519 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTA1\|A0A0A0LTA1_CUCSA	1.2e-35	92.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172590 PE=4 SV=1	[more]
tr\|A0A1S3CL41\|A0A1S3CL41_CUCME	9.9e-35	87.16	leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103502...	[more]
tr\|A0A1S2YNR7\|A0A1S2YNR7_CICAR	3.6e-29	75.00	proline-rich protein 2 OS=Cicer arietinum OX=3827 GN=LOC101498654 PE=4 SV=1	[more]
tr\|A0A0B0MHK6\|A0A0B0MHK6_GOSAR	1.1e-28	83.95	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_21782 PE=4 SV=1	[more]
tr\|M5WHC4\|M5WHC4_PRUPE	2.4e-28	73.56	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G004900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036163	HMA_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26519-RA	Carg26519-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..175
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 141..289 coord: 7..147
None	No IPR available	PANTHER	PTHR22814:SF163	METAL ION BINDING PROTEIN-RELATED	coord: 141..289 coord: 7..147
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	SSF55008	HMA, heavy metal-associated domain	coord: 9..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26519	CmaCh13G003650	Cucurbita maxima (Rimu)	carcmaB1362
Carg26519	Cp4.1LG00g01820	Cucurbita pepo (Zucchini)	carcpeB1370
Carg26519	MELO3C026077.2	Melon (DHL92) v3.6.1	carmedB0968

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None