Carg26409 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26409
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Thioredoxin
Location	Cucurbita_argyrosperma_scaffold_257 : 112932 .. 115754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAACGTAAATTAAAAAAATTAATGAAAAAATTAAATAAATAAAATAAAATAAAATAAAAAAAAGACGCGTCAAATCTCCACTTCCCTTCCGTCTCTCTTTCTGCGGCTCTGCCCACTGATCTGTTTTTACTTCGCATGCCGTTTGATTCCCGATCTCCTTTGCTTCTCTGCTCCTCCTCCTTCTCTCTTGTCCATGGCCTCCTCCTTGCCTTTCTCCGTTCCTCAAACCCTTCCCAATCGCATTTCCTCCCATTCTAACCTCAATTCACTTTGCTTTTTCTCGCCTCCTTCCAATCTGCGTCTCCATCGCCGGATTAGGGCTCGAAATGCTTCTCTCACACTCAACGTTCAATGCGTCAGTCAGGCTAAAGGTTTTTCTCTTCGCTCTGCTTTTGTTTGTTTTCGCTTTACGTTTTGTGTTGTTTTGTTTGTATGCTGTACTCGCCTGTTTGGTACGTTTCTCTAATTTTCTGCTGAAATGAATGAGTTAGTGTAGGTTTTACTACGTTCTAGATGTTGATCTCACTCTTTCTGTCTTTGTGTGCGGCGGATGAGATCTTGATTGTTGTGGTTTTCTTATTTTAGATTTAGTACAATAAATGTGATTGTTGATGAGGATTTAAATGACTGAGCTACAAGGAGATTGACTTCGATTACATATGAGATGGTTTTCAATTTAATCTATGATTCCGATCATATGTTTTGCCTTTTCCTCTAATTATGCTTAGTTTACGGACAGTTAAAGTAATGTTGGTAATGCTCGTATTATTTCGAGGTCCAATCTTAAATTTGCGGTGTGAAGGAATGCTGCAATTGTCGCAAATTCCTGAAATAAAAGGATTTCAAGATCTGTTCAATGAGTTGCGCAACACGCGTACAAATCTTAGGAAAAAATTTGATTGTCTCCTCTGTGTAGTGTTTCAATATCTAAACGTTTTGCCTTTTTTTTTTACTTGGTGTATTATGATGCTTTTAACGAGAGCAATTCCGAAATTGCTACTTCATGGTAACTTTTTTTGGTAACTACGGGAAAGGAAGGGAGTAAATAATTCATTATTAGGGTTTTCAATCATGCCCTGCTAGATGATTTGAATAGAAACAGCGCATGGATGAATATGTTTCATAGCTATCAGATGTCCATTTACTTGTGGAAACCCTACTTTTTTTGACATAGAACGAACTGCACTTAGATACAAGTTAATGTTTTTTTTGTACCTGCTTAGTAAACTACACTTGCATATGATTTTTGTTGAGCTTGTCATGCATGATCACTCCTGTTATCAGCTTGAATTACTAGTTTTTAATGCAATGTTTAGAACTTTTTTTTCTCTGAGTTTGTTCTTCTTTTTCATAGTTACCGAAGACACTTAACATTCCAAGTATAGAGAGTAAATCTTTGTTCTTTGTTCTGACAAAGTTAGAATGTCGTTTCTGTCTCTCTGGACTACATCTTGATGAAGTGGTAGTATGATTATTTTTTCTCAGTCTTCATTCATTGTGTTTCTTACTTTTATAAAGAATATATATATAAATATAAGGTCTTGTTGTATGTTTCCCATCATTACACATAGACTTACCCAATTTTGACATTTGTTTCTGAATGATGTTATCTGGTGATATTACTACTTCATCTCTTTTCTTGTTTCAAGTATGTATGCAGTACACTGGGTTATTTTTTTTGTTTTTTTTTTATTTTTACCTGTGGAATCAGTATCTTGTATGAATATACTATGATGATGGTCTTATGTTTTTGCATCATTGAAACTCATCCTTTCTCCCTTGTTCAAGGGCTTCTTTATCCTATAAACTATTCTTTGTAATCCATTGGTCTCTAGTAATGGTCTCTAGTAATCCATTGGTCTCTAGTAATGGTCGAACCTTACTGTATACTATGGAAATTGCTAGTTGATTAAGGGTTTTCACATATAGTATGATTAGTAGTTACTCTCTGGCAAGAACTTTAGTATTAAAACTTTTGATGTCATTTTTCTTCAGTTTTTAATTGATAAAATTGGTGTAACTATTTGGATTTCCATCTCAAGAATTCCTCTCTGATAATCTTGTATTGGCATACACAGCTGAGGTGGTTACTAAAGAGTCATGGAACAAAATGATTCTAGAGAGTGGAATCCCTGTTCTAGTTGAATTTTATGCTAGTTGGTGTGGACCATGTAGAATGGTGCATCGAGTCATCGATGAGCTAGCTGCTGATTATGAGGGGAAGCTCAAATGCTTTGTACTCAATACTGACAAAGATTTGCAAATAGCCGAAGACTACGAAATTAAGGCTGTTCCTGTGGTCATGTTGTTCAAGAATGGGGAGAAGTGTGAAAGTGTCATCGGCACCATGCCAAAAGATTTCTATATTGCTGCCATCGAAAGGGTCCTCAAGCAGTAGGATGGATGCATGGAAATCAAATGGGACATCTTTTGCAAGGTTGACCTGACCCCCTTGATTGTTCGAGCTGGTCGGATATTTTGTCGTAAAGCTTTACACTAGGCTACTAGTTCTTGAGCTGTATATAAGAATATACTTCACTGTTAAGTTTCTTACTGTAGTTGATCGCATAGCCCTCATTAACCTATGATGATGGCTACATGGCAAATCCACACTTCACTGTTATGGCCTTTAGATGAAACTACTTGGGAGTTCTGAGCCATTTTCTTACTTAAGAATGCTTGCATTTTTCGGTTTTTCTTTATTATTTCGATGATGGAGGATTGAAATCTCTAACCTTTTTGTCGAAGGTATTTGTAGTTTCACTTTTCTGATGATACGTTGGATACCATCATTTGATTAAAAAGGATTGAAGCATTTTG

mRNA sequence

AGAAAACGTAAATTAAAAAAATTAATGAAAAAATTAAATAAATAAAATAAAATAAAATAAAAAAAAGACGCGTCAAATCTCCACTTCCCTTCCGTCTCTCTTTCTGCGGCTCTGCCCACTGATCTGTTTTTACTTCGCATGCCGTTTGATTCCCGATCTCCTTTGCTTCTCTGCTCCTCCTCCTTCTCTCTTGTCCATGGCCTCCTCCTTGCCTTTCTCCGTTCCTCAAACCCTTCCCAATCGCATTTCCTCCCATTCTAACCTCAATTCACTTTGCTTTTTCTCGCCTCCTTCCAATCTGCGTCTCCATCGCCGGATTAGGGCTCGAAATGCTTCTCTCACACTCAACGTTCAATGCGTCAGTCAGGCTAAAGCTGAGGTGGTTACTAAAGAGTCATGGAACAAAATGATTCTAGAGAGTGGAATCCCTGTTCTAGTTGAATTTTATGCTAGTTGGTGTGGACCATGTAGAATGGTGCATCGAGTCATCGATGAGCTAGCTGCTGATTATGAGGGGAAGCTCAAATGCTTTGTACTCAATACTGACAAAGATTTGCAAATAGCCGAAGACTACGAAATTAAGGCTGTTCCTGTGGTCATGTTGTTCAAGAATGGGGAGAAGTGTGAAAGTGTCATCGGCACCATGCCAAAAGATTTCTATATTGCTGCCATCGAAAGGGTCCTCAAGCAGTAGGATGGATGCATGGAAATCAAATGGGACATCTTTTGCAAGGTTGACCTGACCCCCTTGATTGTTCGAGCTGGTCGGATATTTTGTCGTAAAGCTTTACACTAGGCTACTAGTTCTTGAGCTGTATATAAGAATATACTTCACTGTTAAGTTTCTTACTGTAGTTGATCGCATAGCCCTCATTAACCTATGATGATGGCTACATGGCAAATCCACACTTCACTGTTATGGCCTTTAGATGAAACTACTTGGGAGTTCTGAGCCATTTTCTTACTTAAGAATGCTTGCATTTTTCGGTTTTTCTTTATTATTTCGATGATGGAGGATTGAAATCTCTAACCTTTTTGTCGAAGGTATTTGTAGTTTCACTTTTCTGATGATACGTTGGATACCATCATTTGATTAAAAAGGATTGAAGCATTTTG

Coding sequence (CDS)

ATGGCCTCCTCCTTGCCTTTCTCCGTTCCTCAAACCCTTCCCAATCGCATTTCCTCCCATTCTAACCTCAATTCACTTTGCTTTTTCTCGCCTCCTTCCAATCTGCGTCTCCATCGCCGGATTAGGGCTCGAAATGCTTCTCTCACACTCAACGTTCAATGCGTCAGTCAGGCTAAAGCTGAGGTGGTTACTAAAGAGTCATGGAACAAAATGATTCTAGAGAGTGGAATCCCTGTTCTAGTTGAATTTTATGCTAGTTGGTGTGGACCATGTAGAATGGTGCATCGAGTCATCGATGAGCTAGCTGCTGATTATGAGGGGAAGCTCAAATGCTTTGTACTCAATACTGACAAAGATTTGCAAATAGCCGAAGACTACGAAATTAAGGCTGTTCCTGTGGTCATGTTGTTCAAGAATGGGGAGAAGTGTGAAAGTGTCATCGGCACCATGCCAAAAGATTTCTATATTGCTGCCATCGAAAGGGTCCTCAAGCAGTAG

Protein sequence

MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ

Homology

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BLAST of Carg26409 vs. NCBI nr
Match: XP_022927893.1 (thioredoxin M3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 332.8 bits (852), Expect = 6.6e-88
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60
           MAS LPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA
Sbjct: 23  MASYLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 82

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 83  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 142

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 166
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 143 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 187

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BLAST of Carg26409 vs. NCBI nr
Match: XP_022988977.1 (thioredoxin M3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 331.6 bits (849), Expect = 1.5e-87
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60
           MASSLPFSV QTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA
Sbjct: 1   MASSLPFSVHQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 166
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

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BLAST of Carg26409 vs. NCBI nr
Match: XP_023531830.1 (thioredoxin M3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 4.3e-87
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60
           MASSLPFSVPQTLPN ISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQ KA
Sbjct: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 166
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

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BLAST of Carg26409 vs. NCBI nr
Match: XP_008454954.1 (PREDICTED: thioredoxin M3, chloroplastic [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 2.2e-75
Identity = 140/165 (84.85%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60
           MA+S+ FS PQT P+RIS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQ KA
Sbjct: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 166
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

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BLAST of Carg26409 vs. NCBI nr
Match: XP_004136977.1 (PREDICTED: thioredoxin M3, chloroplastic [Cucumis sativus] >KGN43925.1 hypothetical protein Csa_7G073610 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 2.7e-73
Identity = 137/165 (83.03%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60
           MA+S  FS  QT P+RIS +SNLNSL  FSPPSNL  +RR+  RNASLTLN+QC+SQ KA
Sbjct: 1   MAASFSFSTSQTHPDRISPYSNLNSLRLFSPPSNLPFNRRLNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDE+AA+Y+GKLKCFVLNTD DL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDEIAAEYDGKLKCFVLNTDTDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 166
           QIAEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

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BLAST of Carg26409 vs. TAIR10
Match: AT2G15570.2 (Thioredoxin superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 4.2e-44
Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 17  ISSHSNLNSLCFFSPPSNLRLHRR--IRARNASLTLNVQCVSQAKAEV-VTKESWNKMIL 76
           ISS S L  +  FSP S     RR  + +  + L L+  CV  ++A   VT+ SW   +L
Sbjct: 23  ISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAAEVTQRSWEDSVL 82

Query: 77  ESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPV 136
           +S  PVLVEFY SWCGPCRMVHR+IDE+A DY GKL C++LN D DL +AE+YEIKAVPV
Sbjct: 83  KSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPV 142

Query: 137 VMLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           V+LFKNGEK ES++GTMPK+FYI+AIERVL
Sbjct: 143 VLLFKNGEKRESIMGTMPKEFYISAIERVL 172

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BLAST of Carg26409 vs. TAIR10
Match: AT3G15360.1 (thioredoxin M-type 4)

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-28
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 33  SNLRLHRRIR-ARNASLTLNVQCVSQAKAEV--VTKESWNKMILESGIPVLVEFYASWCG 92
           ++L  +RR R AR   +    Q  + A  EV  ++   W   +LES +PVLVEF+A WCG
Sbjct: 58  ASLGANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCG 117

Query: 93  PCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGT 152
           PCRM+H ++D+LA D+ GK K + +NTD+    A  Y I++VP V++FK GEK +S+IG 
Sbjct: 118 PCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGA 177

Query: 153 MPKDFYIAAIERVL 164
           +P++     IER L
Sbjct: 178 VPRETLEKTIERFL 191

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BLAST of Carg26409 vs. TAIR10
Match: AT4G03520.1 (Thioredoxin superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-22
Identity = 48/155 (30.97%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 9   VPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKAEVVTKESW 68
           +P++   RI    +  SL     P   RL R +       T ++Q        VV   +W
Sbjct: 39  LPESSGLRIRLSLSPASLTSIHQPRVSRLRRAVVCEAQETTTDIQ--------VVNDSTW 98

Query: 69  NKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEI 128
           + ++L++  PV+V+F+A WCGPC+M+  ++++LA  Y GK+K + LNTD+       Y +
Sbjct: 99  DSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGV 158

Query: 129 KAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           +++P +M+F  GEK +++IG +PK    +++++ L
Sbjct: 159 RSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

[Close]

BLAST of Carg26409 vs. TAIR10
Match: AT1G03680.1 (thioredoxin M-type 1)

HSP 1 Score: 101.3 bits (251), Expect = 5.9e-22
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 43  ARNASLTLNVQCVSQAKA---EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVID 102
           +R + L   V C +Q  A    VV   +W+ ++L++  PV V+F+A WCGPC+M+  +++
Sbjct: 56  SRVSRLRRGVICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVN 115

Query: 103 ELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAI 162
           ELA  Y G+ K + LNTD+       Y ++++P +M+F NGEK +++IG + KD    +I
Sbjct: 116 ELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSI 175

Query: 163 ERVL 164
            + L
Sbjct: 176 NKFL 179

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BLAST of Carg26409 vs. TAIR10
Match: AT1G76760.1 (thioredoxin Y1)

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-17
Identity = 43/130 (33.08%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 39  RRIRA---RNASLTLNVQCV-SQAKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMV 98
           RR+R    +  SL+   +C   + +A+  T +S+  +++ S  PVLV++YA+WCGPC+ +
Sbjct: 40  RRVRTGDLKFPSLSSTTRCTPRRIEAKKQTFDSFEDLLVNSDKPVLVDYYATWCGPCQFM 99

Query: 99  HRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDF 158
             +++E++   + K++   ++T+K   IA  Y+I+A+P  +LFK+GE C+   G +    
Sbjct: 100 VPILNEVSETLKDKIQVVKIDTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQ 159

Query: 159 YIAAIERVLK 165
            I  IE  LK
Sbjct: 160 LIQRIEDSLK 169

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BLAST of Carg26409 vs. Swiss-Prot
Match: sp|Q9SEU7|TRXM3_ARATH (Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.2e-44
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 17  ISSHSNLNSLCFFSPPSNLRLHRR--IRARNASLTLNVQCVSQAKAEVVTKESWNKMILE 76
           ISS S L  +  FSP S     RR  + +  + L L+  CV  ++A  VT+ SW   +L+
Sbjct: 23  ISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLK 82

Query: 77  SGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVV 136
           S  PVLVEFY SWCGPCRMVHR+IDE+A DY GKL C++LN D DL +AE+YEIKAVPVV
Sbjct: 83  SETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVV 142

Query: 137 MLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           +LFKNGEK ES++GTMPK+FYI+AIERVL
Sbjct: 143 LLFKNGEKRESIMGTMPKEFYISAIERVL 171

[Close]

BLAST of Carg26409 vs. Swiss-Prot
Match: sp|Q7XQQ2|TRXM3_ORYSJ (Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0430800 PE=2 SV=4)

HSP 1 Score: 135.2 bits (339), Expect = 6.6e-31
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 52  VQCV-SQAKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLK 111
           V C  S   A+ +T  SWN+ ++ S IPVL+EF+ASWCGPCRMVHR++DE+A +Y G++K
Sbjct: 58  VSCAYSPRGAKTITACSWNEYVICSDIPVLIEFWASWCGPCRMVHRIVDEIAQEYAGRIK 117

Query: 112 CFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIER 162
           C+ L+TD   Q+A  Y I+ +P V+LFK+GEK  S+ GT+PK  Y+ AIE+
Sbjct: 118 CYKLDTDDYPQVATSYSIERIPTVLLFKDGEKTHSITGTLPKAVYVRAIEK 168

[Close]

BLAST of Carg26409 vs. Swiss-Prot
Match: sp|Q7X8R5|TRXM2_ORYSJ (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0530600 PE=2 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 56/129 (43.41%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 38  HRRIRARNASLTLNVQCV-SQAKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHR 97
           +RR   R AS+   VQ   +  +   VTK +W  +++ES +PVLV ++A+WCGPC+M+  
Sbjct: 52  NRRGGGRGASVVCAVQGQDTSIQVPEVTKSTWQSLVMESELPVLVGYWATWCGPCKMIDP 111

Query: 98  VIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYI 157
           V+ +L+ +YEGKLKC+ LNTD++  IA  Y ++++P +M+FKNGEK ++VIG +P+   I
Sbjct: 112 VVGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVIGAVPESTLI 171

Query: 158 AAIERVLKQ 166
           A+IE+ +++
Sbjct: 172 ASIEKFVER 180

[Close]

BLAST of Carg26409 vs. Swiss-Prot
Match: sp|P23400|TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=TRXM PE=1 SV=3)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 49/109 (44.95%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 55  VSQAKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVL 114
           V +A+A  V  +++  ++LES +PVLV+F+A WCGPCR++  V+DE+A +Y+ KLKC  L
Sbjct: 31  VVRAEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKL 90

Query: 115 NTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           NTD+   +A +Y I+++P +M+FK G+KCE++IG +PK   +  +E+ L
Sbjct: 91  NTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139

[Close]

BLAST of Carg26409 vs. Swiss-Prot
Match: sp|Q6H7E4|TRXM1_ORYSJ (Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0639900 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 54/123 (43.90%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 42  RARNASLTLNVQCVSQA-KAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDE 101
           RAR  S+    Q    + +   VTK +W  +++ES +PVLVEF+ASWCGPC+M+  VI +
Sbjct: 49  RARGVSVVCAAQGQETSFQVPDVTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPVIGK 108

Query: 102 LAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIE 161
           L+ +YEGKL C+ LNTD++  IA  + I+++P +M+FKNGEK ++VIG +P+   +++I+
Sbjct: 109 LSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVSSID 168

Query: 162 RVL 164
           + +
Sbjct: 169 KYI 171

[Close]

BLAST of Carg26409 vs. TrEMBL
Match: tr|A0A1S3C0H5|A0A1S3C0H5_CUCME (thioredoxin M3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495242 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.5e-75
Identity = 140/165 (84.85%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60
           MA+S+ FS PQT P+RIS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQ KA
Sbjct: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 166
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of Carg26409 vs. TrEMBL
Match: tr|A0A0A0K2M6|A0A0A0K2M6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073610 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.8e-73
Identity = 137/165 (83.03%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60
           MA+S  FS  QT P+RIS +SNLNSL  FSPPSNL  +RR+  RNASLTLN+QC+SQ KA
Sbjct: 1   MAASFSFSTSQTHPDRISPYSNLNSLRLFSPPSNLPFNRRLNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDE+AA+Y+GKLKCFVLNTD DL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDEIAAEYDGKLKCFVLNTDTDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 166
           QIAEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of Carg26409 vs. TrEMBL
Match: tr|A0A2P5E936|A0A2P5E936_9ROSA (Thioredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_221700 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.1e-49
Identity = 102/164 (62.20%), Postives = 121/164 (73.78%), Query Frame = 0


Query: 2   ASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASL-TLNVQCVSQAKA 61
           ASS     P    +  SS S LN+  F S P + R    ++  N  L TL V CV +++A
Sbjct: 14  ASSRALQSPVWSLSSSSSRSELNAASFVSFPLHFRFREVLKLPNLKLPTLKVLCVRESRA 73

Query: 62  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 121
             VTK+SW   +L S  PVLVEFYASWCGPCRMVHRVIDE+A +Y GKLKCFVLNTD DL
Sbjct: 74  PAVTKDSWESSVLNSETPVLVEFYASWCGPCRMVHRVIDEIATEYAGKLKCFVLNTDNDL 133

Query: 122 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLK 165
           QIAEDYEIKAVPVV+LFKNG++ E+V+GTMPK+FY+AAIERVLK
Sbjct: 134 QIAEDYEIKAVPVVLLFKNGKRSEAVVGTMPKEFYVAAIERVLK 177

[Close]

BLAST of Carg26409 vs. TrEMBL
Match: tr|A0A2C9VJ98|A0A2C9VJ98_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G072300 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48
Identity = 103/169 (60.95%), Postives = 127/169 (75.15%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSP--PSNLRLH-RRIRARNA---SLTLNVQC 60
           MASS   S P TLP+  +S  +++      P  P    LH + +  +NA   S  L V C
Sbjct: 1   MASSTSLSFPLTLPSPRASSPSVHRCLLHLPSLPFPFTLHAKMLSVKNAPPPSSPLRVFC 60

Query: 61  VSQAKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVL 120
              ++A VVTK+SW K+IL+S +PVLVEF+ASWCGPCRMVHRVIDE+  +Y+GKLKCFVL
Sbjct: 61  SRDSRASVVTKDSWEKLILQSDVPVLVEFFASWCGPCRMVHRVIDEIVGEYDGKLKCFVL 120

Query: 121 NTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           NTD DL+IAE+YEIKAVPVV+LFKNGEK ESV+GTMPK+FY+AAIERVL
Sbjct: 121 NTDSDLEIAENYEIKAVPVVLLFKNGEKRESVVGTMPKEFYVAAIERVL 169

[Close]

BLAST of Carg26409 vs. TrEMBL
Match: tr|W9RYA9|W9RYA9_9ROSA (Thioredoxin M3 OS=Morus notabilis OX=981085 GN=L484_027517 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.4e-48
Identity = 100/151 (66.23%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 14  PNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKAEVVTKESWNKMIL 73
           P+  +  S L +    S P NL+L +R+  RN + TL   CV   KA VVTK+SW K +L
Sbjct: 22  PHSPTFSSELIAASLASFPLNLQLRKRLEIRNRN-TLRTLCVRDTKAPVVTKDSWEKSVL 81

Query: 74  ESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPV 133
            S  PVLVEFYASWCGPCRMVHRVIDE+A +Y G+LKCFVLNTD D QIAEDYEIK VPV
Sbjct: 82  NSKTPVLVEFYASWCGPCRMVHRVIDEIAVEYAGRLKCFVLNTDDDPQIAEDYEIKGVPV 141

Query: 134 VMLFKNGEKCESVIGTMPKDFYIAAIERVLK 165
           V LFKNGEK E+VIGTMPK+FY+AAIERVLK
Sbjct: 142 VFLFKNGEKRETVIGTMPKEFYVAAIERVLK 171

The following BLAST results are available for this feature:

BLAST of Carg26409 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927893.1	6.6e-88	99.39	thioredoxin M3, chloroplastic-like [Cucurbita moschata]	[more]
XP_022988977.1	1.5e-87	99.39	thioredoxin M3, chloroplastic-like [Cucurbita maxima]	[more]
XP_023531830.1	4.3e-87	98.79	thioredoxin M3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_008454954.1	2.2e-75	84.85	PREDICTED: thioredoxin M3, chloroplastic [Cucumis melo]	[more]
XP_004136977.1	2.7e-73	83.03	PREDICTED: thioredoxin M3, chloroplastic [Cucumis sativus] >KGN43925.1 hypotheti...	[more]

BLAST of Carg26409 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15570.2	4.2e-44	59.33	Thioredoxin superfamily protein	[more]
AT3G15360.1	7.2e-28	43.28	thioredoxin M-type 4	[more]
AT4G03520.1	4.5e-22	30.97	Thioredoxin superfamily protein	[more]
AT1G03680.1	5.9e-22	36.29	thioredoxin M-type 1	[more]
AT1G76760.1	7.5e-17	33.08	thioredoxin Y1	[more]

BLAST of Carg26409 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SEU7\|TRXM3_ARATH	5.2e-44	59.73	Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=2 SV=2	[more]
sp\|Q7XQQ2\|TRXM3_ORYSJ	6.6e-31	52.25	Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0...	[more]
sp\|Q7X8R5\|TRXM2_ORYSJ	1.8e-28	43.41	Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0...	[more]
sp\|P23400\|TRXM_CHLRE	1.5e-27	44.95	Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=TRXM P...	[more]
sp\|Q6H7E4\|TRXM1_ORYSJ	2.0e-27	43.90	Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0...	[more]

BLAST of Carg26409 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0H5\|A0A1S3C0H5_CUCME	1.5e-75	84.85	thioredoxin M3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495242 PE=4 SV=1	[more]
tr\|A0A0A0K2M6\|A0A0A0K2M6_CUCSA	1.8e-73	83.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073610 PE=4 SV=1	[more]
tr\|A0A2P5E936\|A0A2P5E936_9ROSA	3.1e-49	62.20	Thioredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_221700 PE=4 SV=1	[more]
tr\|A0A2C9VJ98\|A0A2C9VJ98_MANES	1.5e-48	60.95	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G072300 PE=4 SV=...	[more]
tr\|W9RYA9\|W9RYA9_9ROSA	3.4e-48	66.23	Thioredoxin M3 OS=Morus notabilis OX=981085 GN=L484_027517 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR017937	Thioredoxin_CS
IPR005746	Thioredoxin
IPR013766	Thioredoxin_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26409-RA	Carg26409-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 127..138 score: 27.78 coord: 79..87 score: 61.79 coord: 87..96 score: 49.78
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 61..165 e-value: 6.0E-28 score: 98.9
None	No IPR available	PANTHER	PTHR10438:SF233	THIOREDOXIN M3, CHLOROPLASTIC	coord: 27..163
None	No IPR available	CDD	cd02947	TRX_family	coord: 66..160 e-value: 1.60693E-28 score: 101.866
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 61..160 e-value: 6.1E-25 score: 87.1
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 39..165 score: 12.257
IPR005746	Thioredoxin	TIGRFAM	TIGR01068	TIGR01068	coord: 64..161 e-value: 9.7E-29 score: 97.5
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 27..163
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 80..98
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 53..163

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26409	Cla016016	Watermelon (97103) v1	carwmB0799
Carg26409	Csa7G073610	Cucumber (Chinese Long) v2	carcuB0817
Carg26409	MELO3C018455	Melon (DHL92) v3.5.1	carmeB0798
Carg26409	ClCG02G005980	Watermelon (Charleston Gray)	carwcgB0774
Carg26409	CSPI07G07580	Wild cucumber (PI 183967)	carcpiB0837
Carg26409	Cucsa.219810	Cucumber (Gy14) v1	carcgyB0914
Carg26409	CmoCh11G013670	Cucurbita moschata (Rifu)	carcmoB1085
Carg26409	Lsi03G004980	Bottle gourd (USVL1VR-Ls)	carlsiB736
Carg26409	Cp4.1LG04g07990	Cucurbita pepo (Zucchini)	carcpeB1126
Carg26409	CsGy7G007150	Cucumber (Gy14) v2	carcgybB0791
Carg26409	MELO3C018455.2	Melon (DHL92) v3.6.1	carmedB0810
Carg26409	CsaV3_7G008540	Cucumber (Chinese Long) v3	carcucB0841
Carg26409	Cla97C02G032950	Watermelon (97103) v2	carwmbB0838
Carg26409	Bhi05G000924	Wax gourd	carwgoB0937

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26409	Silver-seed gourd	carcarB246
Carg26409	Cucurbita maxima (Rimu)	carcmaB1113
Carg26409	Cucurbita maxima (Rimu)	carcmaB1114
Carg26409	Cucurbita moschata (Rifu)	carcmoB1086
Carg26409	Cucurbita pepo (Zucchini)	carcpeB1125
Carg26409	Bottle gourd (USVL1VR-Ls)	carlsiB737
Carg26409	Watermelon (Charleston Gray)	carwcgB0775