Carg26388 (gene) Silver-seed gourd

NameCarg26388
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein XRI1 isoform X2
LocationCucurbita_argyrosperma_scaffold_377 : 87512 .. 89980 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTACTCGGTTAGTGGGCGCTTTTCTCCTTCTTCTCCGCCCCTAAGCCCCCATTATCTAGCACACCACAACTCAAACATCGGGGGACCGAACTGGATTTCTCTTCAAATGCTTCTTTTTTGATCGCAGTCAATAGCAGTTCACGAGTGTTGGTCTTGTTTTACTGTTCTAGCCATGGATGATTGCGCCAAAAACAAGTAAGATCGCTGTTCTTCTGCTCTATCTGTTTGTTTATGTGATTGGTTTGGTTTCTCCGTGTTTTTTTTTTGTGTTTTGGAAGATCTAGCTGTTCCTGTTGATTCCTTGTTTTGGGGGAAGCTGTTTTTTGGGGTTTTATTGTAATGGTTCTTCGATTTGTTCTGATTTTCTTGCGCTGTAATCGGTAATTTGAAGTCGAAATGGAGTGGAGGATGAGGCTGTTGGATTTAATTTAAGTAGCGGATCATTGACAGCTAATGACTTGTTATTATTGTTTATAGCGTTCTTGCAGTCTTCCGAGTTGTTTAATTATTGTGTTAATTTGTTGAGAAAATCCTCAAGAAGTATGGTTTAATTTGCTTCTTTCAGTAGTTTGACTTGCTTGGTTGAGATTGAATCAATTGTTTTCCATTTCTATTATGGTAATAAGCGTTGCATGTGCTTAATCTTTCACTTTTGTTGCTTTTATGTGTGATTTTATCAGTGATTCTTGGAATTGGGAAGGAGATGGGTATACCATTCAGAAGGATGCGGATTTAGGTGAGTAATTTTCTTGTTTACTTTGTTTGTTATGTGTTATATGTGAGATCCCACGTTAGTGGAAGAGAGGAACGAAACATTCCTTATAAGGGTGTGGAAACTTCTATCTAGTAGACGTGTTTTAAAACCTTGAGGGGAAGTCTGGAAGGGTAAGGTCAATGAGGACAATATCTGCTAGTGGTGAGCTTGAGTTGTTACATTATTGGTGAGATTCCACGTTAGTTGGAGAGAGGAACGAAGCATTCCTTATAAAGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTGGAGGGGAAGTTCGGAAGGGAATGCTCAAAGAGGATAATATCTGCTAATAATGCGCTTGAGTTGTTATATTCTCTGATCACATTGTGTTAAAATTCATCCTTGGGACCTTTTTTGTTTTCATTGTCATGAGTAGAGATATCAGAATTCCTGTGGGACGGGGTATCCGAAAATGGAAATCTTTCGTACGTGTTTGATGAAACAACTCCTGTTAAAGCTTGTGGGGACTTGGCATTCAATGTTTCATATAGTGGTAAGAACATTACACTTGATTTTAATCTAAGGGGTCGTTGGTTCTTTGTCATTTCTAATGTGGAGAAGTGGGTTTCAGATGACAGGAACAAGAAATCAGAAGAGTCCAGGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAACTTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACATGTAAGTGATATGCACTTCCTGGTGTATGGTTGTAAGAATTCGGATCGACTTCAGTCAAACATGTCAATTCTATAAGTTGTTCTATCTTATTGCTTGTAGTTGCAATAAGTTTGCTTTGCTTTTGATTGAGTTTGCTTGAAAGAATATATAACGTATTACATAGTTTAAGAGAGAGAATCAATCTTCAGTTGAGTAGTATGCTCGTTTCACGAGGTTCTACCATAGTAGGGTGCAATCATACTCAAAATCTGAGTTTGATCCTGGCTTAGAAGGGATGCTAGCTATATGCTTAACACATGAAAGTCGAATGTAGTTTAATAAAAACCTGTGCCAGCACCTCGGATGCAAAACGCTTCTTTATAGGAGAGTCAAGGGCGCTTCCGCGGGCGATTCTAAGTTGCTCCAAGGAGCTTATTGTCGATCTTTAGTGTTTGGGAGATATACTTTTAACAAGGAGTTCCGTTGATAGGAGCTCCTTTTCGAGCTTACGGTCCACTTTTTAAAAAATCAGGCTTCTCCTTTGTCTTTTATTTCAGCACTTGTTTGCTGTCGATCCTCTTAGATGCAAAAACTTAAGTTCTCTGCTATGATGTTAGACTTGTCGATAGATACAAGTATACTGTAGAACTTGTATGAAATTTGTTGTGGCCTTTTGTTCTATATCCAGAAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTCAACTCTCAGGTTTGTCTCAAACACGATACTTTATACGGGATTCCCGAGTGCTCTTGGATTTGTCTAATCATATAATGTATTTGCCTTAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCACTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGATTTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATTAA

mRNA sequence

AGTTACTCGGTTAGTGGGCGCTTTTCTCCTTCTTCTCCGCCCCTAAGCCCCCATTATCTAGCACACCACAACTCAAACATCGGGGGACCGAACTGGATTTCTCTTCAAATGCTTCTTTTTTGATCGCAGTCAATAGCAGTTCACGAGTGTTGGTCTTGTTTTACTGTTCTAGCCATGGATGATTGCGCCAAAAACAAGAACAAGAAATCAGAAGAGTCCAGGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAACTTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACATAAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTCAACTCTCAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCACTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGATTTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATTAA

Coding sequence (CDS)

ATGGATGATTGCGCCAAAAACAAGAACAAGAAATCAGAAGAGTCCAGGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAACTTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACATAAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTCAACTCTCAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCACTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGATTTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATTAA

Protein sequence

MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDLYVSCLHPNCFAYNY
BLAST of Carg26388 vs. NCBI nr
Match: XP_022963649.1 (protein XRI1-like [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 8.4e-51
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0

Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL
Sbjct: 127 YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 171

BLAST of Carg26388 vs. NCBI nr
Match: XP_023511506.1 (protein XRI1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 4.2e-50
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0

Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECSQLSDNVSTFCHENLDHSPEGWIAEC TDADMLCSPEDL
Sbjct: 127 YGIPECSQLSDNVSTFCHENLDHSPEGWIAECLTDADMLCSPEDL 171

BLAST of Carg26388 vs. NCBI nr
Match: XP_022967302.1 (protein XRI1-like [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 5.4e-50
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0

Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECS LSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL
Sbjct: 127 YGIPECSLLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 171

BLAST of Carg26388 vs. NCBI nr
Match: XP_008461885.1 (PREDICTED: protein XRI1 isoform X1 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-41
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0

Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL 
Sbjct: 65  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSLCREDLSSRFLKSHNKDVSSLAALA 124

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 125 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 172

BLAST of Carg26388 vs. NCBI nr
Match: XP_008461886.1 (PREDICTED: protein XRI1 isoform X2 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-41
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0

Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL 
Sbjct: 64  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSLCREDLSSRFLKSHNKDVSSLAALA 123

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 124 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 171

BLAST of Carg26388 vs. TrEMBL
Match: tr|A0A1S3CH27|A0A1S3CH27_CUCME (protein XRI1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-41
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0

Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL 
Sbjct: 65  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSLCREDLSSRFLKSHNKDVSSLAALA 124

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 125 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 172

BLAST of Carg26388 vs. TrEMBL
Match: tr|A0A1S3CFL6|A0A1S3CFL6_CUCME (protein XRI1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-41
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0

Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL 
Sbjct: 64  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSLCREDLSSRFLKSHNKDVSSLAALA 123

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 124 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 171

BLAST of Carg26388 vs. TrEMBL
Match: tr|A0A0A0LBN6|A0A0A0LBN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G628730 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.0e-41
Identity = 86/108 (79.63%), Postives = 93/108 (86.11%), Query Frame = 0

Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETS+C EDLSSRFLK+H K VS PAAL 
Sbjct: 64  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSICREDLSSRFLKSHNKVVSSPAALA 123

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 124 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 171

BLAST of Carg26388 vs. TrEMBL
Match: tr|W9S460|W9S460_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003040 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-16
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 0

Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           N +K +EE RE+ SQ KRRRMLQF  +DM++SLC+E++SS FLK++++  S    LPE S
Sbjct: 63  NMSKGTEECRESFSQMKRRRMLQFPNKDMDSSLCSEEMSSAFLKSNERVDSLEEGLPEGS 122

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPE 110
           + +   S  ++N S   ++ LD SP+GWIA+CF DA+M  SP+
Sbjct: 123 HFV---SGFAENASASGYDTLDQSPDGWIADCFNDAEMHFSPD 162

BLAST of Carg26388 vs. TrEMBL
Match: tr|A0A1Q3BRT3|A0A1Q3BRT3_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_14204 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 54/108 (50.00%), Postives = 72/108 (66.67%), Query Frame = 0

Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           N NK+ EE+R T SQAKRRRML F  Q+++ SLC+E +SS FLK+++++ S    LPEAS
Sbjct: 69  NMNKEPEETRVTSSQAKRRRMLDFNTQEIDFSLCSEAMSSAFLKSNEREESLEEVLPEAS 128

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDLYVS 115
              P  S+  D  S++  E L  S E WIAECF D DM  SP+D+ +S
Sbjct: 129 QWDPGVSE--DAASSY--EGLQTS-EKWIAECFNDTDMPISPDDMTLS 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022963649.18.4e-5197.14protein XRI1-like [Cucurbita moschata][more]
XP_023511506.14.2e-5096.19protein XRI1-like [Cucurbita pepo subsp. pepo][more]
XP_022967302.15.4e-5096.19protein XRI1-like [Cucurbita maxima][more]
XP_008461885.14.6e-4180.56PREDICTED: protein XRI1 isoform X1 [Cucumis melo][more]
XP_008461886.14.6e-4180.56PREDICTED: protein XRI1 isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CH27|A0A1S3CH27_CUCME3.1e-4180.56protein XRI1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1[more]
tr|A0A1S3CFL6|A0A1S3CFL6_CUCME3.1e-4180.56protein XRI1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1[more]
tr|A0A0A0LBN6|A0A0A0LBN6_CUCSA4.0e-4179.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G628730 PE=4 SV=1[more]
tr|W9S460|W9S460_9ROSA3.4e-1648.54Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003040 PE=4 SV=1[more]
tr|A0A1Q3BRT3|A0A1Q3BRT3_CEPFO1.1e-1450.00Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_14204 PE=4... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26388-RACarg26388-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR33385FAMILY NOT NAMEDcoord: 6..114
NoneNo IPR availablePANTHERPTHR33385:SF4PROTEIN XRI1coord: 6..114