Carg26200 (gene) Silver-seed gourd

NameCarg26200
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_219 : 135089 .. 135673 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCGACTGGTTGATCTGTTATTTCAGGGTATGCTCATGTTTGACATATTTTGTGGGGATGTGTATTGGAATAGGAGTGCACGGCTCCATGAATATCTCGACTCGTATACAAATTGAAAAGTAGTAAATCACACTGGAATTCAGATTACATTGAAATATGAAATGGGAATGTTTATGAATCAATTAAGGGTACTTTATGTCCCGTTCTTTGATCATCACAATAGTAAACTTAATATTCATTAAGAACAACGTAATTTTCATGGTGCATACCCACCACCATGTCCTCCGCCTTGTCCGCTGCCTCCGCCAGCTCCATATCCACCTCCTTGTGCACCTCCACCACCATAGCCGCCACCGGAGCCGCCGCCGCCTCCACCTCCATGCCCTCCTGCTCCACTTCCTGAGCCGCCTCCTTCTCCTCCGCCACTTCCGTATCCACCTCCATTTGCTCCTCCACCACCATACCCACCACCGGAACCGCCTCCTCCGCCACCTCCATGCCCTCCTGTTCCGCTCCCTGAGCCGCCTCCTTGTCCTCCGCCACTTCCATATCCACCGCCATTTGCTCCTCCGGCACCATAA

mRNA sequence

ATGACTCGACTGCCGCCACCGGAGCCGCCGCCGCCTCCACCTCCATGCCCTCCTGCTCCACTTCCTGAGCCGCCTCCTTCTCCTCCGCCACTTCCGTATCCACCTCCATTTGCTCCTCCACCACCATACCCACCACCGGAACCGCCTCCTCCGCCACCTCCATGCCCTCCTGTTCCGCTCCCTGAGCCGCCTCCTTGTCCTCCGCCACTTCCATATCCACCGCCATTTGCTCCTCCGGCACCATAA

Coding sequence (CDS)

ATGACTCGACTGCCGCCACCGGAGCCGCCGCCGCCTCCACCTCCATGCCCTCCTGCTCCACTTCCTGAGCCGCCTCCTTCTCCTCCGCCACTTCCGTATCCACCTCCATTTGCTCCTCCACCACCATACCCACCACCGGAACCGCCTCCTCCGCCACCTCCATGCCCTCCTGTTCCGCTCCCTGAGCCGCCTCCTTGTCCTCCGCCACTTCCATATCCACCGCCATTTGCTCCTCCGGCACCATAA

Protein sequence

MTRLPPPEPPPPPPPCPPAPLPEPPPSPPPLPYPPPFAPPPPYPPPEPPPPPPPCPPVPLPEPPPCPPPLPYPPPFAPPAP
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26200-RACarg26200-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 6..22
score: 54.12
coord: 28..40
score: 44.62
coord: 41..62
score: 45.45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg26200Wax gourdcarwgoB0608
Carg26200Silver-seed gourdcarcarB485
Carg26200Silver-seed gourdcarcarB486
Carg26200Silver-seed gourdcarcarB487
Carg26200Cucumber (Gy14) v2carcgybB0503
Carg26200Cucumber (Gy14) v2carcgybB0504
Carg26200Cucumber (Gy14) v1carcgyB0572
Carg26200Cucumber (Gy14) v1carcgyB0573
Carg26200Cucurbita maxima (Rimu)carcmaB0697
Carg26200Cucurbita maxima (Rimu)carcmaB0698
Carg26200Cucurbita maxima (Rimu)carcmaB0699
Carg26200Cucurbita maxima (Rimu)carcmaB0700
Carg26200Cucurbita moschata (Rifu)carcmoB0679
Carg26200Cucurbita moschata (Rifu)carcmoB0680
Carg26200Cucurbita moschata (Rifu)carcmoB0677
Carg26200Cucurbita moschata (Rifu)carcmoB0678
Carg26200Cucurbita pepo (Zucchini)carcpeB0702
Carg26200Cucurbita pepo (Zucchini)carcpeB0703
Carg26200Cucurbita pepo (Zucchini)carcpeB0704
Carg26200Cucurbita pepo (Zucchini)carcpeB0705
Carg26200Wild cucumber (PI 183967)carcpiB0534
Carg26200Wild cucumber (PI 183967)carcpiB0535
Carg26200Cucumber (Chinese Long) v2carcuB0526
Carg26200Cucumber (Chinese Long) v2carcuB0527
Carg26200Cucumber (Chinese Long) v3carcucB0532
Carg26200Cucumber (Chinese Long) v3carcucB0533
Carg26200Bottle gourd (USVL1VR-Ls)carlsiB450
Carg26200Bottle gourd (USVL1VR-Ls)carlsiB451
Carg26200Melon (DHL92) v3.5.1carmeB0503
Carg26200Melon (DHL92) v3.5.1carmeB0502
Carg26200Melon (DHL92) v3.6.1carmedB0507
Carg26200Melon (DHL92) v3.6.1carmedB0508
Carg26200Watermelon (Charleston Gray)carwcgB0486
Carg26200Watermelon (Charleston Gray)carwcgB0487
Carg26200Watermelon (97103) v1carwmB0496
Carg26200Watermelon (97103) v1carwmB0497
Carg26200Watermelon (97103) v2carwmbB0524
Carg26200Watermelon (97103) v2carwmbB0525