Carg26166 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26166
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Leucine-rich repeat (LRR) family protein
Location	Cucurbita_argyrosperma_scaffold_444 : 118500 .. 120532 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCGCTGATCCCACCGTGCGTAAGAATCAAATGCTACGTATACGCCCAAAACCCAACCGGGGATCCTCTAGCCACTGCGATTGCCACAATCCTTCGCATAACTCAAGAATGCTCAAAAGCAACTCACGCCTACTGACGCTCAATTTTGGGTATCCAAGACATGGGGTCGGGGACAATTACTGCCTCTTCAAAGGCTTCTCTGCACGGTCGTTCCGGACCTCAGATATCACTGGCCTGGTCCTGCCATTGACTTCAGTGGGGCCAAGATTGTGTGGGCGTTCTTGCTTGGAGACTCTACCTGCTTCATACGAAAGATATTGCCTATCTATTCATGCTAATTCCAATAACTTTAAGTGGCGTTTATCAAGCGGAATATTGAGAAGTAGAGGGATTCTTATTTGTATGAGCTTGATTCATTGAGTAACAATAAGTTCTTGTGGGTTCATATCGTTTTGGAGCCAACTAATATTGTCGTTTGTTGGACCTTCGTTTTCAATGGTTATGATTATATGGTTCGGTGCCGGAATCGGTTGTTTAATATTGCACTGAATGTGCTGTTTATCTAAACAAACAAGTGGTTTCAACTGGGACGACCCCGCGCAGCACGTTCGGTAACGACGCCCCCTCTATGGTCACCTTGCTGCAACCAGTTTACAGGTCCCTCCATCCCTACTTAATTTTCAACATAATAATCAATAAGAATTCAAATAAATGGTTATGATCTTGTCATTTTAAGCTAATTCCCTTCTGGGTTTGCTTTGGGATAATTCTAAAAGGTCTCAGGAGATAGTGTTCTTAATTTGTAAAACACATGGATCATTCCCTCAAATTAGCCTAAGTGGAACTCCTTCCCAACAATTATTCTCAATAGATCGGGCTCTTTTGATATTTGGGATTGAGGTCAATAGGAACAATGCTTTAAATTGAAGAGAGGGTTGTTGGGAGGGAGTATGACTATTGGCTGATTAAACCGATGATCATTAGGTTTATAAGTAAGAAGGAATACATCCCTATTGATGATGAGGGTTTTTGGGAAAAAAAATACGAGAGCTTATACTCAAAGTGGACATATCATGCCGTGTGAGGTCCTGATTCAATAACATATATCATGGTCACATAAGAATACTCAAGTGTCGAACCAAAGAAGGTGTTGAGTTTTCGAAAGGTATAACAGTCAAAAGTGACTCAAGATGGTCGAACAAATCAATATGTACTTTGTTACGAGGACTCAAGAAAAGAGTCCAGGAGACTAGTATCAAAGGGCTCCATAGGTCTCAGGGGAACCTCTATGGTGTACTTTGTTCGAGTGGAAGAAGTTTTGGAGGGAGTTACACATTGGGCTAATGGGCGTTTTATAAGTAAAGAATACATCTTTGTTGGTAGATGTGATTTTTTATCATACCATTGCAGAAGTTGGTGATTTCTAACCAAATTTCAAGCTTATGGGTTGGTTTAATGTAAATGATGTTTTATTCTTACATGCAGGTCCGATCCCACCGACAATCGGGCGAGCGTGGAGGACTCTACGCGAGGTACTATTCTTAAAAAACAGCCTCTCCGGTTGTCTGCCGTTCGAGATAGGCTATTTACTAAAAGCCACAGTGTTGGACGCCAGCTCAAACATCATAACAGGTCCAATACCCAAGTCCTTAGGCTGCCTATTCAGTTTGCAAATCCTTAACTTAGCCAACAACCACTTGTACGGAGCCATTCCAGAGTCCCTCTGCAGCCTCCCACACGTCTACAACATAACTCTAAGCAACAACTATTTCACCCGAGTCGGCCCACAGTGCCGGAAGTTAATCACAGCTCAAAGGCTCCACGTCCAAGGAAACTGCCTTCCGGGCTTCCGGTGCCAAAAAACCGCAGCCGAATGCGCCACTTTCTTCTGTAAACCACGGAGCTGCCCACGAGCCAACACGTTCAACTATGTTCCTTGTAAGCTCCCCACCATGGCTGCGGTTGCTTCGGTTCATGATATGGTTCCTCCTTCGCCTCGTTCGTATGCGGCCCTTGAAAGACCTTAA

mRNA sequence

ATGGCGTCCGCTGATCCCACCGTGCGTAAGAATCAAATGCTACGTATACGCCCAAAACCCAACCGGGGATCCTCTAGCCACTGCGATTGCCACAATCCTTCGCATAACTCAAGAATGCTCAAAAGCAACTCACGCCTACTGACGCTCAATTTTGGGTATCCAAGACATGGGGTCGGGGACAATTACTGCCTCTTCAAAGGCTTCTCTGCACGGTCGTTCCGGACCTCAGATATCACTGGCCTGGTCCTGCCATTGACTTCAGTGGGGCCAAGATTGTGTGGGCGTTCTTGCTTGGAGACTCTACCTGCTTCATACGAAAGATATTGCCTATCTATTCATGCTAATTCCAATAACTTTAAGTGGCGTTTATCAAGCGGAATATTGAGAAGTAGAGGGATTCTTATTTGTCCGATCCCACCGACAATCGGGCGAGCGTGGAGGACTCTACGCGAGGTACTATTCTTAAAAAACAGCCTCTCCGGTTGTCTGCCGTTCGAGATAGGCTATTTACTAAAAGCCACAGTGTTGGACGCCAGCTCAAACATCATAACAGGTCCAATACCCAAGTCCTTAGGCTGCCTATTCAGTTTGCAAATCCTTAACTTAGCCAACAACCACTTGTACGGAGCCATTCCAGAGTCCCTCTGCAGCCTCCCACACGTCTACAACATAACTCTAAGCAACAACTATTTCACCCGAGTCGGCCCACAGTGCCGGAAGTTAATCACAGCTCAAAGGCTCCACGTCCAAGGAAACTGCCTTCCGGGCTTCCGGTGCCAAAAAACCGCAGCCGAATGCGCCACTTTCTTCTGTAAACCACGGAGCTGCCCACGAGCCAACACGTTCAACTATGTTCCTTGTAAGCTCCCCACCATGGCTGCGGTTGCTTCGGTTCATGATATGGTTCCTCCTTCGCCTCGTTCGTATGCGGCCCTTGAAAGACCTTAA

Coding sequence (CDS)

ATGGCGTCCGCTGATCCCACCGTGCGTAAGAATCAAATGCTACGTATACGCCCAAAACCCAACCGGGGATCCTCTAGCCACTGCGATTGCCACAATCCTTCGCATAACTCAAGAATGCTCAAAAGCAACTCACGCCTACTGACGCTCAATTTTGGGTATCCAAGACATGGGGTCGGGGACAATTACTGCCTCTTCAAAGGCTTCTCTGCACGGTCGTTCCGGACCTCAGATATCACTGGCCTGGTCCTGCCATTGACTTCAGTGGGGCCAAGATTGTGTGGGCGTTCTTGCTTGGAGACTCTACCTGCTTCATACGAAAGATATTGCCTATCTATTCATGCTAATTCCAATAACTTTAAGTGGCGTTTATCAAGCGGAATATTGAGAAGTAGAGGGATTCTTATTTGTCCGATCCCACCGACAATCGGGCGAGCGTGGAGGACTCTACGCGAGGTACTATTCTTAAAAAACAGCCTCTCCGGTTGTCTGCCGTTCGAGATAGGCTATTTACTAAAAGCCACAGTGTTGGACGCCAGCTCAAACATCATAACAGGTCCAATACCCAAGTCCTTAGGCTGCCTATTCAGTTTGCAAATCCTTAACTTAGCCAACAACCACTTGTACGGAGCCATTCCAGAGTCCCTCTGCAGCCTCCCACACGTCTACAACATAACTCTAAGCAACAACTATTTCACCCGAGTCGGCCCACAGTGCCGGAAGTTAATCACAGCTCAAAGGCTCCACGTCCAAGGAAACTGCCTTCCGGGCTTCCGGTGCCAAAAAACCGCAGCCGAATGCGCCACTTTCTTCTGTAAACCACGGAGCTGCCCACGAGCCAACACGTTCAACTATGTTCCTTGTAAGCTCCCCACCATGGCTGCGGTTGCTTCGGTTCATGATATGGTTCCTCCTTCGCCTCGTTCGTATGCGGCCCTTGAAAGACCTTAA

Protein sequence

MASADPTVRKNQMLRIRPKPNRGSSSHCDCHNPSHNSRMLKSNSRLLTLNFGYPRHGVGDNYCLFKGFSARSFRTSDITGLVLPLTSVGPRLCGRSCLETLPASYERYCLSIHANSNNFKWRLSSGILRSRGILICPIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSNIITGPIPKSLGCLFSLQILNLANNHLYGAIPESLCSLPHVYNITLSNNYFTRVGPQCRKLITAQRLHVQGNCLPGFRCQKTAAECATFFCKPRSCPRANTFNYVPCKLPTMAAVASVHDMVPPSPRSYAALERP

Homology

[Close]

BLAST of Carg26166 vs. NCBI nr
Match: XP_022951757.1 (uncharacterized protein At4g06744-like [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 5.0e-60
Identity = 207/351 (58.97%), Postives = 219/351 (62.39%), Query Frame = 0


Query: 51  FGYPRHGVGDNYCLFKGFSARSFRTSDITGLVLPLTSVGPRLCGRSCLETLPASYERYCL 110
           FGY +  VGDNYCLFKGF        +ITGL   +   G R  GR        ++ R+  
Sbjct: 78  FGYTKTWVGDNYCLFKGFFCDVVPDLNITGL-SSIDFSGARFGGRF------LNFYRFIR 137

Query: 111 SI------HANSNNFKWRLSSGILRSRGILICPI-------------------------- 170
           ++      HANSNNF   +   I + R +    +                          
Sbjct: 138 NLPDIAIFHANSNNFSGVIKRNIEKLRFLYELDLSNNKFLGGFPGSVLGANKLSFVDLRF 197

Query: 171 ------------------------------------------------------PPTIGR 230
                                                                   TIGR
Sbjct: 198 NGYNGSVPDRLFNIDTDVLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGR 257

Query: 231 AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX 290
           AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 258 AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX 317

Query: 291 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPGFRCQKTAA 316
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPGFRCQKTAA
Sbjct: 318 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPGFRCQKTAA 377

[Close]

BLAST of Carg26166 vs. NCBI nr
Match: XP_023537880.1 (uncharacterized protein At4g06744-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 201/351 (57.26%), Postives = 216/351 (61.54%), Query Frame = 0


Query: 51  FGYPRHGVGDNYCLFKGFSARSFRTSDITGLVLPLTSVGPRLCGRSCLETLPASYERYCL 110
           FGY +  VGDNYCLFKGF        +ITGL   +   G R  GR        ++ R+  
Sbjct: 79  FGYTKTWVGDNYCLFKGFFCDVVPDLNITGL-SSIDFSGARFGGRF------LNFYRFIR 138

Query: 111 SI------HANSNNFKWRLSSGILRSRGILICPI-------------------------- 170
           ++      HANSNNF   +   I + R +    +                          
Sbjct: 139 NLPDIAIFHANSNNFSGVIKRNIEKLRFLYELDLSNNKFLGGFPGSVLGANKLSFVDLRF 198

Query: 171 ------------------------------------------------------PPTIGR 230
                                                                   TIGR
Sbjct: 199 NGYNGSLPDRLFNIDTDVLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGR 258

Query: 231 AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX 290
           AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 259 AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX 318

Query: 291 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPGFRCQKTAA 316
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX VGP+CR LITA+RLHVQGNCLPGFRCQKTA 
Sbjct: 319 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGPKCRNLITAERLHVQGNCLPGFRCQKTAT 378

[Close]

BLAST of Carg26166 vs. NCBI nr
Match: XP_023002891.1 (uncharacterized protein At4g06744-like [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 6.8e-57
Identity = 211/386 (54.66%), Postives = 232/386 (60.10%), Query Frame = 0


Query: 17  RPKPNRGSSSHCDCHNPSHNSRMLKSNSRLLTLN-FGYPRHGVGDNYCLFKGFSARSFRT 76
           RPK N G  +  +     H ++ LK N   +T + FGY +  VGDNYCLFKGF       
Sbjct: 61  RPKTNPGPLA--NGATILHITQELKRN---ITYDPFGYTKTWVGDNYCLFKGFFCDVVPD 120

Query: 77  SDITGLVLPLTSVGPRLCGRSCLETLPASYERYCLSI------HANSNNFKWRLSSGILR 136
            +ITGL   +   G R  G+        ++ R+  ++      HANSNNF   +   I +
Sbjct: 121 LNITGL-SSIDFSGARFGGQF------LNFYRFIRNLPDIAIFHANSNNFSGVIKRNINK 180

Query: 137 SRGILICPI--------------------------------------------------- 196
            R +    +                                                   
Sbjct: 181 LRFLYELDLSNNKFLGGFPGSVLGANKLSFVDFRFNGYNGSVPYRLFNIDTDVLFIXXXX 240

Query: 197 -----------------------------PPTIGRAWRTLREVLFLKNSLSGCLPFEIGY 256
                                         PTIGRAWRTLREVLFLKN LSGCLPFEIGY
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTIGRAWRTLREVLFLKNRLSGCLPFEIGY 300

Query: 257 LLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 316
           L+KATVLDASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 LVKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

[Close]

BLAST of Carg26166 vs. NCBI nr
Match: XP_022961677.1 (uncharacterized protein At4g06744-like [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 8.6e-52
Identity = 206/414 (49.76%), Postives = 231/414 (55.80%), Query Frame = 0


Query: 1   MASADPTVRKNQMLRIRPKPNR-GSSSHCDCHNPSHNSRMLKSNSRLLTLN--------- 60
           +A   P      + RIRP+P+      +     P+++   L +  R+L +          
Sbjct: 21  LAQTGPPRPNPTITRIRPRPSLIPPGINLMPRRPNNDPGPLANRDRILFITHELKRNITY 80

Query: 61  --FGYPRHGVGDNYCLFKGFSARSFRTSDITGL-VLPLTSV---GPRLCGRSCLETLPAS 120
              GY +  VGDNYCLFKGF        +ITGL  +  +     GP L     +  LP  
Sbjct: 81  DPLGYTKTWVGDNYCLFKGFFCDVVPDLNITGLSSIDFSGARFGGPFLNFYRFIRNLPD- 140

Query: 121 YERYCLSIHANSNNFKWRLSSGILRSRGI------------------------------- 180
                   HANSNNF   ++  I + R +                               
Sbjct: 141 ----IAIFHANSNNFTGVINRNINKLRFLYELDLSNNKFLGGFPGYVLGANKLAFVDFRF 200

Query: 181 -------------------------------------------------LICPIPPTIGR 240
                                                               PIPPTIGR
Sbjct: 201 NTYNGSVPYRLFNIDTDVLFINNNGFAGRIPQATFGNTPALYITLAGNKFTGPIPPTIGR 260

Query: 241 AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX 300
           AWRTLREVLFL+N LSGCLPFEIGYL+KATV DA+SXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 261 AWRTLREVLFLRNRLSGCLPFEIGYLVKATVFDANSXXXXXXXXXXXXXXXXXXXXXXXX 320

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPGFRCQKTAA 316
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GPQCRKL+TAQRLHVQGNCLPGFR QKTAA
Sbjct: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQCRKLVTAQRLHVQGNCLPGFRLQKTAA 380

[Close]

BLAST of Carg26166 vs. NCBI nr
Match: XP_023545662.1 (uncharacterized protein At4g06744-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 206/414 (49.76%), Postives = 231/414 (55.80%), Query Frame = 0


Query: 1   MASADPTVRKNQMLRIRPKPNR-GSSSHCDCHNPSHNSRMLKSNSRLLTLN--------- 60
           +A   P      + RIRP+P+            P+++   L + +R+L +          
Sbjct: 21  LAQTGPPRPNPTITRIRPRPSLIPPGIKLMPRRPNNDPGPLANRARILFITQELKRNITY 80

Query: 61  --FGYPRHGVGDNYCLFKGFSARSFRTSDITGL-VLPLTSV---GPRLCGRSCLETLPAS 120
              GY +  VGDNYCLFKGF        +ITGL  +  +     GP L     +  LP  
Sbjct: 81  DPLGYTKTWVGDNYCLFKGFFCDVVPDLNITGLSSIDFSGARFGGPFLNFYRFIRNLPD- 140

Query: 121 YERYCLSIHANSNNFKWRLSSGILRSRGI------------------------------- 180
                   HANSNNF   ++  I + R +                               
Sbjct: 141 ----IAIFHANSNNFTGVINRNINKLRFLYELDLSNNKFLGGFPGYVLGANKLAFVDFRF 200

Query: 181 -------------------------------------------------LICPIPPTIGR 240
                                                               PIPPTIGR
Sbjct: 201 NTYNGSVPYRLFNIDTDILFINNNGFAGRIPQATFGNTPALYITLAGNKFTGPIPPTIGR 260

Query: 241 AWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXXXXXXXXXX 300
           AWRTLREVLFL+N LSGCLPFEIGYL+KATV DA+SXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 261 AWRTLREVLFLRNRLSGCLPFEIGYLVKATVFDANSXXXXXXXXXXXXXXXXXXXXXXXX 320

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPGFRCQKTAA 316
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GPQCRKL+TAQRLHVQGNCLPGFR QKTAA
Sbjct: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQCRKLVTAQRLHVQGNCLPGFRSQKTAA 380

[Close]

BLAST of Carg26166 vs. TAIR10
Match: AT4G06744.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-12
Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 0


Query: 137 PIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASS--XXXXXXXXXXXXXX 196
           P+P +I R+  TL EVLFL N  +GC+P EIG+L  A+V+D     XXXXXXXXXXXXXX
Sbjct: 229 PLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASVIDIGGXXXXXXXXXXXXXXXX 288

Query: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCL 256
           XXXXXXXXXXXXXXXXXXX                    VGP CR L+    L V  NC+
Sbjct: 289 XXXXXXXXXXXXXXXXXXXCMLLRDNLVNLSLSDNYFTHVGPWCRGLLEKGVLDVGNNCI 348

Query: 257 PGFRCQKTAAECATFFCKPRS--CPRANTFNYVPCKLPTMAAVAS--VHDMVPPSP 307
           P F  Q++  ECA FF KP+   CP     ++  C+   +++ +S     MV PSP
Sbjct: 349 PFFPGQRSMQECAEFFVKPKKYYCPHMWFHSFFSCRYSHISSSSSSAFMPMVAPSP 404

[Close]

BLAST of Carg26166 vs. TAIR10
Match: AT1G49750.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 234 VGPQCRKLITAQRLHVQGNCLPGFRCQKTAAECATFFCKPRSCPRANTFNYVPC 288
           VGP+CRKLI  + + V  NC+     QKT +ECA FF + ++CP + +   VPC
Sbjct: 403 VGPKCRKLIKRKIMDVSMNCILDLPNQKTPSECAKFFMRKQTCPNSKSLFTVPC 456

[Close]

BLAST of Carg26166 vs. TAIR10
Match: AT3G22800.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 42.4 bits (98), Expect = 6.2e-04
Identity = 23/76 (30.26%), Postives = 38/76 (50.00%), Query Frame = 0


Query: 111 SIHANSNNFKWRLSSGI---------LRSRGILICPIPPTIGRAWRTLREVLFLKNSLSG 170
           ++  N N F++RL   I         L +  +    +PP+  +  +TL E++   + L+G
Sbjct: 198 ALFINDNKFQFRLPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQLTG 257

Query: 171 CLPFEIGYLLKATVLD 178
           CL  EIG L + TV D
Sbjct: 258 CLNREIGLLNQLTVFD 273

[Close]

BLAST of Carg26166 vs. Swiss-Prot
Match: sp|Q8W3M4|Y4744_ARATH (Uncharacterized protein At4g06744 OS=Arabidopsis thaliana OX=3702 GN=At4g06744 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-11
Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 0


Query: 137 PIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASS--XXXXXXXXXXXXXX 196
           P+P +I R+  TL EVLFL N  +GC+P EIG+L  A+V+D     XXXXXXXXXXXXXX
Sbjct: 229 PLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASVIDIGGXXXXXXXXXXXXXXXX 288

Query: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCL 256
           XXXXXXXXXXXXXXXXXXX                    VGP CR L+    L V  NC+
Sbjct: 289 XXXXXXXXXXXXXXXXXXXCMLLRDNLVNLSLSDNYFTHVGPWCRGLLEKGVLDVGNNCI 348

Query: 257 PGFRCQKTAAECATFFCKPRS--CPRANTFNYVPCKLPTMAAVAS--VHDMVPPSP 307
           P F  Q++  ECA FF KP+   CP     ++  C+   +++ +S     MV PSP
Sbjct: 349 PFFPGQRSMQECAEFFVKPKKYYCPHMWFHSFFSCRYSHISSSSSSAFMPMVAPSP 404

[Close]

BLAST of Carg26166 vs. TrEMBL
Match: tr|A0A1S3BBI2|A0A1S3BBI2_CUCME (uncharacterized protein At4g06744-like OS=Cucumis melo OX=3656 GN=LOC103487867 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-47
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 137 PIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXX 196
           PIPPTIGRAWRTL EVLFLKN L+GCLPFEIGYL+KATV DA++XXXXXXXXXXXXXXXX
Sbjct: 248 PIPPTIGRAWRTLTEVLFLKNRLTGCLPFEIGYLVKATVFDANTXXXXXXXXXXXXXXXX 307

Query: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPG 256
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +GP CRKL+TAQRLH+QGNC+PG
Sbjct: 308 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRIGPVCRKLVTAQRLHIQGNCIPG 367

Query: 257 FRCQKTAAECATFFCKPRSCPRANTFNYVPCKLPT-----MAAVASVHDMVPPSPRSYAA 316
           FR QKT ++CA FF KPR+CPRANTF+YVPC LPT      A V SV DMVPPSPRSYAA
Sbjct: 368 FRLQKTQSQCAAFFAKPRTCPRANTFSYVPCVLPTAAQLDKATVTSVDDMVPPSPRSYAA 427

[Close]

BLAST of Carg26166 vs. TrEMBL
Match: tr|E5GB82|E5GB82_CUCME (LRR-family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-47
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 137 PIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXX 196
           PIPPTIGRAWRTL EVLFLKN L+GCLPFEIGYL+KATV DA++XXXXXXXXXXXXXXXX
Sbjct: 248 PIPPTIGRAWRTLTEVLFLKNRLTGCLPFEIGYLVKATVFDANTXXXXXXXXXXXXXXXX 307

Query: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPG 256
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +GP CRKL+TAQRLH+QGNC+PG
Sbjct: 308 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRIGPVCRKLVTAQRLHIQGNCIPG 367

Query: 257 FRCQKTAAECATFFCKPRSCPRANTFNYVPCKLPT-----MAAVASVHDMVPPSPRSYAA 316
           FR QKT ++CA FF KPR+CPRANTF+YVPC LPT      A V SV DMVPPSPRSYAA
Sbjct: 368 FRLQKTQSQCAAFFAKPRTCPRANTFSYVPCVLPTAAQLDKATVTSVDDMVPPSPRSYAA 427

[Close]

BLAST of Carg26166 vs. TrEMBL
Match: tr|A0A0A0LND0|A0A0A0LND0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356090 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.3e-44
Identity = 150/187 (80.21%), Postives = 162/187 (86.63%), Query Frame = 0


Query: 137 PIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXX 196
           PIP TIGRAWRTL EVLFLKN L+GCLPFEIGYL+KATV DA++XXXXXXXXXXXXXXXX
Sbjct: 248 PIPSTIGRAWRTLTEVLFLKNRLTGCLPFEIGYLVKATVFDANTXXXXXXXXXXXXXXXX 307

Query: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPG 256
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +GP CRKL+ AQRLH+QGNC+PG
Sbjct: 308 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIGPVCRKLVIAQRLHIQGNCIPG 367

Query: 257 FRCQKTAAECATFFCKPRSCPRANTFNYVPCKLPT--------MAAVASVHDMVPPSPRS 316
           FR QKT ++CA FF KPR+CPRANTF+YVPC LPT         A V SV DMVPPSPRS
Sbjct: 368 FRLQKTQSQCAAFFAKPRTCPRANTFSYVPCVLPTAAEAVQLDKAKVTSVDDMVPPSPRS 427

[Close]

BLAST of Carg26166 vs. TrEMBL
Match: tr|A0A2C9VZG7|A0A2C9VZG7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G176700 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.4e-28
Identity = 126/181 (69.61%), Postives = 143/181 (79.01%), Query Frame = 0


Query: 137 PIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXX 196
           PIP +IGRAW TL E LFL+N L+GCLPFEIGYL KATVLD   XXXXXXXXXXXXXXXX
Sbjct: 197 PIPRSIGRAWNTLTEALFLRNRLTGCLPFEIGYLQKATVLDXXXXXXXXXXXXXXXXXXX 256

Query: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPG 256
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VGPQCR+LI A+RL+V  NC+ G
Sbjct: 257 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQVGPQCRRLIRARRLNVNRNCIMG 316

Query: 257 FRCQKTAAECATFFCKPRSCPRANTFNYVPCKLP--TMAAVASVHDMVPPSPRSYAALER 316
              Q+ AAECA FF KPRSC R ++F+++PC LP  +M   +   D   P+P+SY AL  
Sbjct: 317 LPGQRPAAECARFFAKPRSCARESSFSFIPCTLPASSMKIASPPTDDEAPAPQSYKALHA 376

[Close]

BLAST of Carg26166 vs. TrEMBL
Match: tr|A0A140G4M9|A0A140G4M9_9ROSI (LRR-RLK (Fragment) OS=Vernicia montana OX=316732 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.8e-27
Identity = 123/181 (67.96%), Postives = 139/181 (76.80%), Query Frame = 0


Query: 137 PIPPTIGRAWRTLREVLFLKNSLSGCLPFEIGYLLKATVLDASSXXXXXXXXXXXXXXXX 196
           PIP +IGR W TL E LFL N L+GCLPFEIGYL KATV D   XXXXXXXXXXXXXXXX
Sbjct: 237 PIPRSIGRTWNTLTEALFLGNRLTGCLPFEIGYLQKATVFDXXXXXXXXXXXXXXXXXXX 296

Query: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPQCRKLITAQRLHVQGNCLPG 256
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   VGPQCR LI A+RLHV  NC+ G
Sbjct: 297 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTQVGPQCRSLIRARRLHVNRNCIMG 356

Query: 257 FRCQKTAAECATFFCKPRSCPRANTFNYVPCKLP--TMAAVASVHDMVPPSPRSYAALER 316
              Q+ AAECA FF +PRSC R ++F+++PC LP  +M   +   +   P+P+SY ALE 
Sbjct: 357 LPGQRPAAECARFFARPRSCARESSFSFIPCNLPASSMKIASPPTEDEAPAPQSYKALEN 416

The following BLAST results are available for this feature:

BLAST of Carg26166 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951757.1	5.0e-60	58.97	uncharacterized protein At4g06744-like [Cucurbita moschata]	[more]
XP_023537880.1	1.0e-57	57.26	uncharacterized protein At4g06744-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002891.1	6.8e-57	54.66	uncharacterized protein At4g06744-like [Cucurbita maxima]	[more]
XP_022961677.1	8.6e-52	49.76	uncharacterized protein At4g06744-like [Cucurbita moschata]	[more]
XP_023545662.1	1.1e-51	49.76	uncharacterized protein At4g06744-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg26166 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G06744.1	2.1e-12	47.73	Leucine-rich repeat (LRR) family protein	[more]
AT1G49750.1	1.2e-07	44.44	Leucine-rich repeat (LRR) family protein	[more]
AT3G22800.1	6.2e-04	30.26	Leucine-rich repeat (LRR) family protein	[more]

BLAST of Carg26166 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W3M4\|Y4744_ARATH	3.8e-11	47.73	Uncharacterized protein At4g06744 OS=Arabidopsis thaliana OX=3702 GN=At4g06744 P...	[more]

BLAST of Carg26166 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBI2\|A0A1S3BBI2_CUCME	5.5e-47	82.61	uncharacterized protein At4g06744-like OS=Cucumis melo OX=3656 GN=LOC103487867 P...	[more]
tr\|E5GB82\|E5GB82_CUCME	5.5e-47	82.61	LRR-family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LND0\|A0A0A0LND0_CUCSA	3.3e-44	80.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356090 PE=4 SV=1	[more]
tr\|A0A2C9VZG7\|A0A2C9VZG7_MANES	4.4e-28	69.61	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G176700 PE=4 SV=...	[more]
tr\|A0A140G4M9\|A0A140G4M9_9ROSI	2.8e-27	67.96	LRR-RLK (Fragment) OS=Vernicia montana OX=316732 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26166-RA	Carg26166-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 92..265 e-value: 1.5E-23 score: 84.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR32093	FAMILY NOT NAMED	coord: 134..313
None	No IPR available	PANTHER	PTHR32093:SF96	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 134..313
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 137..259

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26166	Cla022593	Watermelon (97103) v1	carwmB0075
Carg26166	Csa2G356090	Cucumber (Chinese Long) v2	carcuB0086
Carg26166	MELO3C010838	Melon (DHL92) v3.5.1	carmeB0077
Carg26166	ClCG08G016140	Watermelon (Charleston Gray)	carwcgB0076
Carg26166	CSPI02G18880	Wild cucumber (PI 183967)	carcpiB0090
Carg26166	Cucsa.395940	Cucumber (Gy14) v1	carcgyB0089
Carg26166	CmaCh05G001650	Cucurbita maxima (Rimu)	carcmaB0101
Carg26166	CmaCh12G005650	Cucurbita maxima (Rimu)	carcmaB0100
Carg26166	CmoCh05G001650	Cucurbita moschata (Rifu)	carcmoB0109
Carg26166	CmoCh12G005080	Cucurbita moschata (Rifu)	carcmoB0108
Carg26166	Lsi08G014920	Bottle gourd (USVL1VR-Ls)	carlsiB068
Carg26166	Cp4.1LG11g01320	Cucurbita pepo (Zucchini)	carcpeB0112
Carg26166	Cp4.1LG07g05070	Cucurbita pepo (Zucchini)	carcpeB0113
Carg26166	CsGy2G018780	Cucumber (Gy14) v2	carcgybB0086
Carg26166	MELO3C010838.2	Melon (DHL92) v3.6.1	carmedB0078
Carg26166	CsaV3_2G026480	Cucumber (Chinese Long) v3	carcucB0093
Carg26166	Cla97C08G159770	Watermelon (97103) v2	carwmbB0074
Carg26166	Bhi04G000345	Wax gourd	carwgoB0089

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26166	Carg11862	Silver-seed gourd	carcarB090

The following block(s) are covering this gene:

None