Carg26048 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26048
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING/FYVE/PHD zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_258 : 105353 .. 108211 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGCGAAGTGTTTGAAGAAATGCCAAGCTGAGAGAGATGCCCAAAAACCCATTTAATCTTCTTCCTTCCTTAAAACTCAGAGCAACGTCGCAGGGCATAAAAAGGGTACCCGCTTTCTTTGCTTGTACAAAATTCCATCCCCTTCTTCTAAGTTTCTTCCTCCTTTTTTTATTTGCTTCCCTTTTCTTATATTCTTCTTTCCTTCCTTTTCTCTTCTGCCTGTTTCTTCTCCTTTTCCTCTGTTTTCCTCTGTTTTCCTCCTCCTCCTTATAAACCTTTGCCCTCTACTTTTTCCTGTATATCTTTCCTAATGTTGTCGGTGGGGTTTTAAAGAGGATCCTGTAGTCTTTTTTTGTTGGGGTTTTCCTCATTTATCTTGTTTTGTCATTGCCCACATGCATGTTGTTTAATCTCTAGCATAACCCATTAATTGGAAAGAATTAAAGGCTTGGTTTCTCATATCTCTATGCTGTTGGTCCGTTTAAATATTGTGAAATCAATTGTCCTGATATTGCGAGTTTCTTAGTATGGGGGATCACTTTGTTTTGCTGGTTGATCGGTTGTTGACGGAGTCGACATTAGGAGCAGCAATCGAGAGTCGAAGGCAGTTGATGGAAGCGACATCGTCTTCTTCCACAGATGATTTGAAGAGGAATAAGTCAACCTTAGAAATGGAGTTCGAAGATATACTTTCTTCAAAGAAAATGGTGGAATGTAGAATATGTCAGGATGAGGATGAAGACTCGAACATGGAAACGCCTTGCTCGTGCCGTGGTAGCCTTAAGGTTTGTTGATGAACTCATTTCTGATCGTTGTATTGGTCTTCTTGTTGTGTTCTTCATGCCTTCGTGTTTGTGAACTTTGCACTTGATTCCAAATATGGAGCATAGAAACAAACTTCTTTGCATTTTTGGAAAGCAAGCTCATTGATATATGCCATAGTTGTCATTATAGTTCACTTCAGCAACACGGATACGTCATTCTAATGCACCATTATCTTGAAGTTTACATCTCCAACACAACTCTCAAGTTGTTAACTGTGCTGCTTTCTCGTGCATATATCCATTATATTTCTCCATACCCAAAAATCTTGTGCCACAATAGACTTCTCATGTAAGTTTACTTGACATGTTCCATTGGATTTTGCAGTACGCGCATCGAAGATGCATACAGAAGTGGTGTAATGAGAAGGGTAACACAGTTTGTGAAATATGCCAACAGGTGGAGTATGATGTTTTGTAGTTCTTTCCTCCTAGTTTTTGTCGCTTTGATATAAGATTATAATCTATAGTGTAACAGCCCAAGTCTACCGCCAGTAAATATTGTCTTTTTTTGGTCTTTCCCTTTCGAGCTTTCCCTCAAAGTTTTTAAAACGCGTTTGCTAGAGAGGGGTTTCCACACCCTTATGAAGAATGTTTCATTCTCCTCCCCTCAATGTGGGATCTCACAATCCAGACACTGTGTGGTGTACCAACAAGGATGCTGGGCCCCGAAGGGGGGAGGGGTGGATTGTGAGGTCCCACGTTGATTGGGGGAGAGGAATGAGTGCCAGCAAAGATGTGGGGCTCCAAAGGGGATGACTTGTATGATCCCAAATCAATTGGAGAGGGGAACGAGTACCAGCGAGGATGCTGACTCCAAAGGGGAGTGAATTGCGAGATCCCACGTCGGCTGGGGAGGAGAATGAAATATTTTTTATAAGCGTGTGGTAATCTCTCCCTAACCGACGCGTTTTAAAAACCTTGAGGGAAAGCCCAAAAGGGAAAGCCTAAAGAGAGAACAATATCTACTAGCAGTGGGCTTGAGCGGTTACTTGTTGCTTTGCCCGAGAATATCAGTTTGTTTAATGCAGTTTCTACAACAAAACTGAACAATGGTACTATGGTTTTTCAGCAATTCAAGCCAGGCTACACGGCTCCTCCTTCGTTATTTGAAATGAGACGTATCCCAATGAACTTCAGGTAATGTTCTTGCTATAATTCTTCCAAAGTATGATCTTTCCACTTTAACTTGAGAATTTCTTGAAGTTCTTTGATTGACTCTGTTTTTCCTTGCAGAGGGAACTGGGAGATGTCTAGAAGGGACTCGGATAGTCCTACCTATATAACAATGGTATCATCAAACCGTAATGTGGCTGATTCCGATTATGATGAGATAGCAGCTTCTGCTGCAAGCAGTGTCCTATGCTGTCATTCAATTGCTATCACCGTAAGTTCTCTTTCTCCCTTGAAGCGTTTGTGTTAGGAAAATATCAAAACCTGAAGCGTTTGTTTCTCTTTTTCTTTGTAGTTCATGGTTCTTCTGGTTTTGAGGCACACTCTTCCCCTCATGTTTAATGAAACCAGTGATTACTCTTTTCCTATGCTTCTGGTAAGAAATCTTATGTTCCATTTCTGTTTTTCAACAAATGCAAGACCCCCAAAACTTCTATCAGAAAGTTGAATTATACTCCCTTCTATGACAGTTGATATGCCTGCGAATTTTCGGGATCTGCCTACTGATATACGTTATGTTCAAAGTCGTCACTGCGGTGCATCGTCGTCGACTTCTCGTACGTGCCCAGAACAATCCAATGCATCATCTCCTTTTACAGTTAACAAACATTTTCATCCTCTTAGTGATAATTCAAGTATGTTTATGGTTTCTTGTTTTTGGGTGACTATGATCAGCTGCCTACGTCTTCTAGCTCACCCATTAGTTCATCCAGCATAGCTCGGAGTTCGACGTCCCAATCGCCCCAACCTCAGCCTAACTTTATCCGTGTTTGATGAGTTTTGTACGAGCTTGGAGAAACTCGATTTCAAGGCTGAAAGACGGTGTAGCTGTGGTTATCCTAATGCAAAAGGTTTCATGGC

mRNA sequence

ATGCACGCGAATATGGGGGATCACTTTGTTTTGCTGGTTGATCGGTTGTTGACGGAGTCGACATTAGGAGCAGCAATCGAGAGTCGAAGGCAGTTGATGGAAGCGACATCGTCTTCTTCCACAGATGATTTGAAGAGGAATAAGTCAACCTTAGAAATGGAGTTCGAAGATATACTTTCTTCAAAGAAAATGGTGGAATGTAGAATATGTCAGGATGAGGATGAAGACTCGAACATGGAAACGCCTTGCTCGTGCCGTGGTAGCCTTAAGTACGCGCATCGAAGATGCATACAGAAGTGGTGTAATGAGAAGGGCTACACGGCTCCTCCTTCGTTATTTGAAATGAGACGTATCCCAATGAACTTCAGAGGGAACTGGGAGATGTCTAGAAGGGACTCGGATAGTCCTACCTATATAACAATGGTATCATCAAACCGTAATGTGGCTGATTCCGATTATGATGAGATAGCAGCTTCTGCTGCAAGCAGTGTCCTATGCTGTCATTCAATTGCTATCACCTTCATGGTTCTTCTGGTTTTGAGGCACACTCTTCCCCTCATGTTTAATGAAACCAGTGATTACTCTTTTCCTATGCTTCTGTTGATATGCCTGCGAATTTTCGGGATCTGCCTACTGATATACGTTATGTTCAAAGTCGTCACTGCGGTGCATCGTCGTCGACTTCTCGTACGTGCCCAGAACAATCCAATGCATCATCTCCTTTTACAGTTAACAAACATTTTCATCCTCTTAGTGATAATTCAACTGCCTACGTCTTCTAGCTCACCCATTAGTTCATCCAGCATAGCTCGGAGTTCGACGTCCCAATCGCCCCAACCTCAGCCTAACTTTATCCGTGTTTGATGAGTTTTGTACGAGCTTGGAGAAACTCGATTTCAAGGCTGAAAGACGGTGTAGCTGTGGTTATCCTAATGCAAAAGGTTTCATGGC

Coding sequence (CDS)

ATGCACGCGAATATGGGGGATCACTTTGTTTTGCTGGTTGATCGGTTGTTGACGGAGTCGACATTAGGAGCAGCAATCGAGAGTCGAAGGCAGTTGATGGAAGCGACATCGTCTTCTTCCACAGATGATTTGAAGAGGAATAAGTCAACCTTAGAAATGGAGTTCGAAGATATACTTTCTTCAAAGAAAATGGTGGAATGTAGAATATGTCAGGATGAGGATGAAGACTCGAACATGGAAACGCCTTGCTCGTGCCGTGGTAGCCTTAAGTACGCGCATCGAAGATGCATACAGAAGTGGTGTAATGAGAAGGGCTACACGGCTCCTCCTTCGTTATTTGAAATGAGACGTATCCCAATGAACTTCAGAGGGAACTGGGAGATGTCTAGAAGGGACTCGGATAGTCCTACCTATATAACAATGGTATCATCAAACCGTAATGTGGCTGATTCCGATTATGATGAGATAGCAGCTTCTGCTGCAAGCAGTGTCCTATGCTGTCATTCAATTGCTATCACCTTCATGGTTCTTCTGGTTTTGAGGCACACTCTTCCCCTCATGTTTAATGAAACCAGTGATTACTCTTTTCCTATGCTTCTGTTGATATGCCTGCGAATTTTCGGGATCTGCCTACTGATATACGTTATGTTCAAAGTCGTCACTGCGGTGCATCGTCGTCGACTTCTCGTACGTGCCCAGAACAATCCAATGCATCATCTCCTTTTACAGTTAACAAACATTTTCATCCTCTTAGTGATAATTCAACTGCCTACGTCTTCTAGCTCACCCATTAGTTCATCCAGCATAGCTCGGAGTTCGACGTCCCAATCGCCCCAACCTCAGCCTAACTTTATCCGTGTTTGA

Protein sequence

MHANMGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKMVECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKGYTAPPSLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSIAITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRRLLVRAQNNPMHHLLLQLTNIFILLVIIQLPTSSSSPISSSSIARSSTSQSPQPQPNFIRV

Homology

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BLAST of Carg26048 vs. NCBI nr
Match: XP_023521591.1 (E3 ubiquitin-protein ligase MARCH8-like [Cucurbita pepo subsp. pepo] >XP_023549808.1 E3 ubiquitin-protein ligase MARCH8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.9 bits (1078), Expect = 7.2e-114
Identity = 220/237 (92.83%), Postives = 220/237 (92.83%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           MGDHFVLLVDRLLTESTLGAAIESRRQ MEATSSSSTDDLKRNKSTLEMEFEDI SSKKM
Sbjct: 1   MGDHFVLLVDRLLTESTLGAAIESRRQSMEATSSSSTDDLKRNKSTLEMEFEDIPSSKKM 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPP 124
           VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK              GYTAPP
Sbjct: 61  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKGNTVCEICQQQFKPGYTAPP 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 184
           SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI
Sbjct: 121 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 180

Query: 185 AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRR 228
           AITFMVLLVLRHTLPLMFNE SDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRR
Sbjct: 181 AITFMVLLVLRHTLPLMFNEASDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRR 237

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BLAST of Carg26048 vs. NCBI nr
Match: XP_022990541.1 (E3 ubiquitin-protein ligase MARCH11 [Cucurbita maxima])

HSP 1 Score: 419.5 bits (1077), Expect = 9.4e-114
Identity = 220/238 (92.44%), Postives = 221/238 (92.86%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           MGDHFVLLVDRLLTESTLGAAIESRRQ MEATSSSST DLKRNKSTLEMEFEDILSSKKM
Sbjct: 1   MGDHFVLLVDRLLTESTLGAAIESRRQSMEATSSSSTGDLKRNKSTLEMEFEDILSSKKM 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPP 124
           VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK              GYTAPP
Sbjct: 61  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKGNTVCEICQQQFKPGYTAPP 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 184
           SLFEMRRIPMNFRGNWEMSRRDSDSPTYIT+VSSNRNVADSDYDEIAASAASSVLCCHSI
Sbjct: 121 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITVVSSNRNVADSDYDEIAASAASSVLCCHSI 180

Query: 185 AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRRL 229
           AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHR RL
Sbjct: 181 AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRHRL 238

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BLAST of Carg26048 vs. NCBI nr
Match: XP_022922015.1 (E3 ubiquitin-protein ligase MARCH8-like [Cucurbita moschata])

HSP 1 Score: 418.7 bits (1075), Expect = 1.6e-113
Identity = 219/234 (93.59%), Postives = 219/234 (93.59%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM
Sbjct: 1   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPP 124
           VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK              GYTAPP
Sbjct: 61  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKGNTVCEICQQQFKPGYTAPP 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 184
           SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI
Sbjct: 121 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 180

Query: 185 AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVH 225
           AITFMVLLVLRH LPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVH
Sbjct: 181 AITFMVLLVLRHILPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVH 234

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BLAST of Carg26048 vs. NCBI nr
Match: XP_022152265.1 (uncharacterized protein LOC111020033 isoform X1 [Momordica charantia] >XP_022152266.1 uncharacterized protein LOC111020033 isoform X1 [Momordica charantia] >XP_022152267.1 uncharacterized protein LOC111020033 isoform X1 [Momordica charantia] >XP_022152268.1 uncharacterized protein LOC111020033 isoform X1 [Momordica charantia] >XP_022152269.1 uncharacterized protein LOC111020033 isoform X1 [Momordica charantia] >XP_022152270.1 uncharacterized protein LOC111020033 isoform X1 [Momordica charantia])

HSP 1 Score: 338.6 bits (867), Expect = 2.1e-89
Identity = 184/241 (76.35%), Postives = 200/241 (82.99%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           MGDHFVLLVDRLLTES L AAIESR++  EAT SS+ D L+R+KS+ EMEFE+I S KKM
Sbjct: 1   MGDHFVLLVDRLLTESRLEAAIESRKRSTEAT-SSAMDCLRRDKSSPEMEFENIPSPKKM 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPP 124
           VECRICQDEDEDSNMETPCSC GSLKYAHR CIQKWCNEK              GYTAPP
Sbjct: 61  VECRICQDEDEDSNMETPCSCCGSLKYAHRSCIQKWCNEKGDTICEICHQQFKPGYTAPP 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYI-TMVSSNRNVADSDYDEIAASAASSVLCCHS 184
            LFEM RIPMNFRGNWE+SRRD  SP+YI  MVSSNRNVADS+YDE + SAA+SVLCCHS
Sbjct: 121 PLFEMGRIPMNFRGNWEISRRDLGSPSYIAAMVSSNRNVADSEYDEFSTSAANSVLCCHS 180

Query: 185 IAITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRRLL 231
           +AI FMVLLVLRHTLPL+FNE+ DYSFPMLL ICLR FGI L IYVMFKVVT VHRRRLL
Sbjct: 181 VAIIFMVLLVLRHTLPLIFNESGDYSFPMLLSICLRTFGIFLPIYVMFKVVTTVHRRRLL 240

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BLAST of Carg26048 vs. NCBI nr
Match: XP_008467135.1 (PREDICTED: uncharacterized protein LOC103504564 isoform X1 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 1.8e-88
Identity = 179/241 (74.27%), Postives = 200/241 (82.99%), Query Frame = 0


Query: 4   NMGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKK 63
           +MGDHFVLLVDRLLTESTL AAIESR+   EAT SS+ D LKR++S+ +M FE+I S KK
Sbjct: 45  SMGDHFVLLVDRLLTESTLEAAIESRKPSTEAT-SSAMDGLKRDRSSPDMGFENIPSPKK 104

Query: 64  MVECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAP 123
           +VECRICQDEDEDSNMETPCSC GSLKYAHRRCIQKWCNEK              GYTAP
Sbjct: 105 IVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICRQQYEPGYTAP 164

Query: 124 PSLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHS 183
           P LFEM RIPMNFRGNWE+SRR+ DSP+YI MVSSNRNVAD  YDE +ASAA+SVLCCHS
Sbjct: 165 PPLFEMGRIPMNFRGNWEISRRNLDSPSYIAMVSSNRNVADPGYDEFSASAATSVLCCHS 224

Query: 184 IAITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRRLL 231
           +AI FMVLLVLRH+LPL+FNE+  YSFP+LL ICLR FGI L +YVMFKVV AVHRRRLL
Sbjct: 225 VAIIFMVLLVLRHSLPLIFNESGGYSFPLLLTICLRTFGIFLPVYVMFKVVFAVHRRRLL 284

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BLAST of Carg26048 vs. TAIR10
Match: AT2G01275.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 201.4 bits (511), Expect = 7.3e-52
Identity = 116/235 (49.36%), Postives = 151/235 (64.26%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           MGDHFVLLVDRL+TEST+ AAI+SR Q+++A        +  +K TLEM     LS   M
Sbjct: 1   MGDHFVLLVDRLITESTIEAAIQSRNQMLQANIPVEECTILDDK-TLEMLRNGDLS---M 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKG--------------YTAPP 124
            ECRIC DED DSNMETPCSC GS+KYAHRRC+Q+WCNEKG              YTAPP
Sbjct: 61  AECRICHDEDLDSNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAPP 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 184
            L E+  +P++FRGNW +S+R+     +IT+V ++    D  Y     S+ +S +CC S+
Sbjct: 121 PLLELGHVPLHFRGNWGISQREH---RFITVVPADSTFIDQPY---PLSSTTSFICCRSL 180

Query: 185 AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHR 226
            + FM LL+LRHTLPL+   ++ + FP+  L+ LRI GI L IYV+ K V    R
Sbjct: 181 VLIFMALLILRHTLPLVLTGSNLHVFPLFTLLFLRILGIMLPIYVVTKAVATCRR 225

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BLAST of Carg26048 vs. TAIR10
Match: AT5G38070.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 158.7 bits (400), Expect = 5.4e-39
Identity = 90/237 (37.97%), Postives = 129/237 (54.43%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           MGDH VL+VDRL ++S LG    +  +         ++ +       E +F         
Sbjct: 1   MGDHLVLVVDRLSSDSGLGTVNRADPKADSVNEDGVSESISAGADLCESKF--------- 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPP 124
           V+CRIC DEDED+NM+TPCSC G+LK+AH  C+Q+WCNEK              GYTAP 
Sbjct: 61  VQCRICHDEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYKPGYTAPR 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 184
            LF    I MNF  +W +   D  +P ++T        AD D+D  +  + +S++CC  I
Sbjct: 121 QLFHYTGISMNFGSDWGIEGLDLRNPYFLTW-----GDADDDHDLYSFHSPTSLICCRLI 180

Query: 185 AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRR 228
           A+ F++LL LRH+LP++     D+S  +L+L  +R  GI L+ YV FK    + R R
Sbjct: 181 ALLFVLLLFLRHSLPVLLGGVDDFSITLLMLPLVRTLGILLIAYVFFKSFIVIQRCR 223

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BLAST of Carg26048 vs. TAIR10
Match: AT1G14260.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-23
Identity = 77/239 (32.22%), Postives = 106/239 (44.35%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           M +H  ++    L    L  A  S R    A ++    D      T E E ED L S   
Sbjct: 1   MSNHHTVVYVNGLVRPVLAEAEYSMRTESPADNAIDIYD----GDTTENEEEDSLISS-- 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPP 124
            ECRICQDE +  N+E+PC+C GSLKYAHR+C+Q+WCNEK              GYT+  
Sbjct: 61  AECRICQDECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQPYQAGYTSXX 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 184
                     +  G W +S  D D P  + +  + R + +S+YD+  AS  S      S 
Sbjct: 121 XXXXXXXXXXDIGGGWRISGLDLDDPRLLAIAEAERQILESEYDDYTASDTSGAAFFRSA 180

Query: 185 AITFMVLLVLRH--TLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRR 228
                     RH  T+P   +   D    +L L  LR     L  Y+M   ++ +HRRR
Sbjct: 181 XXXXXXXXXXRHALTIPDYSDSEDDDPSSILSLFLLRAASFLLPCYIMASAISILHRRR 233

[Close]

BLAST of Carg26048 vs. TAIR10
Match: AT2G02960.5 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 8.7e-21
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 66  ECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPPS 125
           ECRIC DE    N+E+PC+C GSLKYAHR+C+Q+WCNEK              GYTAPP 
Sbjct: 42  ECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAPPP 101

Query: 126 LFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAAS 163
             +     ++  G W +S  D   P  + +  + R   +S+Y E  AS+AS
Sbjct: 102 PLQPEETTIDIGGGWTISGLDVHDPRLLAIAEAERRYLESEYVEYTASSAS 152

[Close]

BLAST of Carg26048 vs. TAIR10
Match: AT3G47550.3 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-20
Identity = 64/175 (36.57%), Postives = 89/175 (50.86%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIES--------RRQLMEATSSSSTD-DLKRNKSTLEMEF 64
           M DH  L  DRL+T  +L +  +S        R Q  +  SSS  + ++ R    +  E 
Sbjct: 1   MADHLSLCTDRLITSESLDSEKDSDSSGESSYRPQGTDLASSSVNETEVPREYYAVADEE 60

Query: 65  EDILSSKKMVECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK----------- 124
           E +L S   VECRICQ+ED   N+E PC+C GSLKYAHR+C+Q+WCNEK           
Sbjct: 61  EPLLQS---VECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDITCEICHQP 120

Query: 125 ---GYTAPPSLFEMRRIPMNFRGNWEMS-RRDSDSPTYITMVSSNRNVADSDYDE 156
              GYTA         I ++   +WE     D   P  + M ++ R+  ++DYDE
Sbjct: 121 YQHGYTAXXXXXXXXXI-IHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDE 171

[Close]

BLAST of Carg26048 vs. Swiss-Prot
Match: sp|Q5XH39|MARH8_XENLA (E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis OX=8355 GN=march8 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 7.1e-04
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 15  RLLTESTLGAAIESRRQLMEATSSSSTDDLKR-NKSTLEMEFEDILSSKKMVECRICQDE 74
           +L  E TLG ++     + +A S +S     R  ++++    +DI        CRIC  E
Sbjct: 8   KLQNEKTLGHSVSRSSNISKAGSPTSVSAPSRFPRTSVTPSSQDI--------CRICHCE 67

Query: 75  -DEDSNMETPCSCRGSLKYAHRRCIQKW 101
            D++S + TPC C GSL + H+ C+Q+W
Sbjct: 68  GDDESPLITPCHCTGSLHFVHQACLQQW 87

[Close]

BLAST of Carg26048 vs. Swiss-Prot
Match: sp|P40318|DOA10_YEAST (ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SSM4 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.2e-04
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 67  CRICQDE-DEDSNMETPCSCRGSLKYAHRRCIQKWCNEK 105
           CRIC+ E  ED+ +  PC CRGS+KY H  C+ +W   K
Sbjct: 39  CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASK 77

[Close]

BLAST of Carg26048 vs. Swiss-Prot
Match: sp|A6NNE9|MARHB_HUMAN (E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens OX=9606 GN=MARCH11 PE=2 SV=3)

HSP 1 Score: 45.8 bits (107), Expect = 9.2e-04
Identity = 16/39 (41.03%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 67  CRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKG 106
           C+IC    E   +  PC C GS++Y H+ C+ KW +E+G
Sbjct: 170 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERG 208

[Close]

BLAST of Carg26048 vs. Swiss-Prot
Match: sp|Q8CBH7|MARHB_MOUSE (E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus OX=10090 GN=March11 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 9.2e-04
Identity = 16/39 (41.03%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 67  CRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKG 106
           C+IC    E   +  PC C GS++Y H+ C+ KW +E+G
Sbjct: 168 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERG 206

[Close]

BLAST of Carg26048 vs. Swiss-Prot
Match: sp|A6P320|MARHB_RAT (E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus OX=10116 GN=March11 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.2e-04
Identity = 16/39 (41.03%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 67  CRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEKG 106
           C+IC    E   +  PC C GS++Y H+ C+ KW +E+G
Sbjct: 166 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERG 204

[Close]

BLAST of Carg26048 vs. TrEMBL
Match: tr|A0A1S3CST7|A0A1S3CST7_CUCME (uncharacterized protein LOC103504564 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504564 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.2e-88
Identity = 179/241 (74.27%), Postives = 200/241 (82.99%), Query Frame = 0


Query: 4   NMGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKK 63
           +MGDHFVLLVDRLLTESTL AAIESR+   EAT SS+ D LKR++S+ +M FE+I S KK
Sbjct: 45  SMGDHFVLLVDRLLTESTLEAAIESRKPSTEAT-SSAMDGLKRDRSSPDMGFENIPSPKK 104

Query: 64  MVECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAP 123
           +VECRICQDEDEDSNMETPCSC GSLKYAHRRCIQKWCNEK              GYTAP
Sbjct: 105 IVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICRQQYEPGYTAP 164

Query: 124 PSLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHS 183
           P LFEM RIPMNFRGNWE+SRR+ DSP+YI MVSSNRNVAD  YDE +ASAA+SVLCCHS
Sbjct: 165 PPLFEMGRIPMNFRGNWEISRRNLDSPSYIAMVSSNRNVADPGYDEFSASAATSVLCCHS 224

Query: 184 IAITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRRLL 231
           +AI FMVLLVLRH+LPL+FNE+  YSFP+LL ICLR FGI L +YVMFKVV AVHRRRLL
Sbjct: 225 VAIIFMVLLVLRHSLPLIFNESGGYSFPLLLTICLRTFGIFLPVYVMFKVVFAVHRRRLL 284

[Close]

BLAST of Carg26048 vs. TrEMBL
Match: tr|A0A1S3CST5|A0A1S3CST5_CUCME (uncharacterized protein LOC103504564 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504564 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.5e-88
Identity = 179/240 (74.58%), Postives = 199/240 (82.92%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSSSSTDDLKRNKSTLEMEFEDILSSKKM 64
           MGDHFVLLVDRLLTESTL AAIESR+   EAT SS+ D LKR++S+ +M FE+I S KK+
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESRKPSTEAT-SSAMDGLKRDRSSPDMGFENIPSPKKI 60

Query: 65  VECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAPP 124
           VECRICQDEDEDSNMETPCSC GSLKYAHRRCIQKWCNEK              GYTAPP
Sbjct: 61  VECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICRQQYEPGYTAPP 120

Query: 125 SLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHSI 184
            LFEM RIPMNFRGNWE+SRR+ DSP+YI MVSSNRNVAD  YDE +ASAA+SVLCCHS+
Sbjct: 121 PLFEMGRIPMNFRGNWEISRRNLDSPSYIAMVSSNRNVADPGYDEFSASAATSVLCCHSV 180

Query: 185 AITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLIYVMFKVVTAVHRRRLLV 231
           AI FMVLLVLRH+LPL+FNE+  YSFP+LL ICLR FGI L +YVMFKVV AVHRRRLL+
Sbjct: 181 AIIFMVLLVLRHSLPLIFNESGGYSFPLLLTICLRTFGIFLPVYVMFKVVFAVHRRRLLL 239

[Close]

BLAST of Carg26048 vs. TrEMBL
Match: tr|A0A1S4DSC9|A0A1S4DSC9_CUCME (uncharacterized protein LOC103504564 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504564 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 150/203 (73.89%), Postives = 168/203 (82.76%), Query Frame = 0


Query: 42  DDLKRNKSTLEMEFEDILSSKKMVECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWC 101
           D LKR++S+ +M FE+I S KK+VECRICQDEDEDSNMETPCSC GSLKYAHRRCIQKWC
Sbjct: 2   DGLKRDRSSPDMGFENIPSPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWC 61

Query: 102 NEK--------------GYTAPPSLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRN 161
           NEK              GYTAPP LFEM RIPMNFRGNWE+SRR+ DSP+YI MVSSNRN
Sbjct: 62  NEKGDTICEICRQQYEPGYTAPPPLFEMGRIPMNFRGNWEISRRNLDSPSYIAMVSSNRN 121

Query: 162 VADSDYDEIAASAASSVLCCHSIAITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIF 221
           VAD  YDE +ASAA+SVLCCHS+AI FMVLLVLRH+LPL+FNE+  YSFP+LL ICLR F
Sbjct: 122 VADPGYDEFSASAATSVLCCHSVAIIFMVLLVLRHSLPLIFNESGGYSFPLLLTICLRTF 181

Query: 222 GICLLIYVMFKVVTAVHRRRLLV 231
           GI L +YVMFKVV AVHRRRLL+
Sbjct: 182 GIFLPVYVMFKVVFAVHRRRLLL 204

[Close]

BLAST of Carg26048 vs. TrEMBL
Match: tr|A0A0A0KSZ3|A0A0A0KSZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571450 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 147/203 (72.41%), Postives = 168/203 (82.76%), Query Frame = 0


Query: 42  DDLKRNKSTLEMEFEDILSSKKMVECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWC 101
           D LKR+KS+ +M F+++ S KK+VECRICQDEDEDSNMETPCSC GSLKYAHRRCIQKWC
Sbjct: 2   DGLKRDKSSTDMGFDNVQSPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWC 61

Query: 102 NEK--------------GYTAPPSLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRN 161
           NEK              GYTAPP LFEM RIPMNFRGNWE+SRR+ D+P+YI MVSSNRN
Sbjct: 62  NEKGDTICEICRQQYKPGYTAPPPLFEMGRIPMNFRGNWEISRRNLDNPSYIAMVSSNRN 121

Query: 162 VADSDYDEIAASAASSVLCCHSIAITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIF 221
           VADS YDE +ASAA+SVLCCHS+AI FMVLLVLRH+LPL+FNE+  ++FP+LL ICLR F
Sbjct: 122 VADSGYDEFSASAATSVLCCHSVAIIFMVLLVLRHSLPLIFNESGSHTFPLLLTICLRTF 181

Query: 222 GICLLIYVMFKVVTAVHRRRLLV 231
           GI L IYVMFKVV AVHRRRL +
Sbjct: 182 GIFLPIYVMFKVVFAVHRRRLFL 204

[Close]

BLAST of Carg26048 vs. TrEMBL
Match: tr|A0A2N9FP90|A0A2N9FP90_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16456 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.6e-69
Identity = 148/254 (58.27%), Postives = 182/254 (71.65%), Query Frame = 0


Query: 5   MGDHFVLLVDRLLTESTLGAAIESRRQLMEATSS-SSTDDLKRNKSTLEMEFEDILSSKK 64
           MGDHFVLLVDRLLTESTL AAIESR + M+ATSS    D+ K + S+ ++++ +I S +K
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESRNKTMQATSSVVIIDEEKIDISSKKVDYGNISSPRK 60

Query: 65  MVECRICQDEDEDSNMETPCSCRGSLKYAHRRCIQKWCNEK--------------GYTAP 124
           +VECRICQDEDEDSNMETPCSC GSLKYAHRRC+Q+WCNEK              GYTAP
Sbjct: 61  VVECRICQDEDEDSNMETPCSCCGSLKYAHRRCVQRWCNEKGDTMCEICHQQFKPGYTAP 120

Query: 125 PSLFEMRRIPMNFRGNWEMSRRDSDSPTYITMVSSNRNVADSDYDEIAASAASSVLCCHS 184
           P LF+  R+PMNFRGNWE+SRRD +SP  I MVS+NRN+ D DYDE +AS   S++CC S
Sbjct: 121 PPLFQFGRVPMNFRGNWEISRRDLNSPRIIAMVSANRNLLDPDYDEYSASTTRSLICCRS 180

Query: 185 IA----------------ITFMVLLVLRHTLPLMFNETSDYSFPMLLLICLRIFGICLLI 228
           +A                I FMVLL+LRHTLPL+ N +++YSFP+ +L+ LR  GI L I
Sbjct: 181 VALIVFSLSLYVCVYKILIKFMVLLILRHTLPLIINGSNEYSFPLSMLLLLRTAGIVLPI 240

The following BLAST results are available for this feature:

BLAST of Carg26048 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521591.1	7.2e-114	92.83	E3 ubiquitin-protein ligase MARCH8-like [Cucurbita pepo subsp. pepo] >XP_0235498...	[more]
XP_022990541.1	9.4e-114	92.44	E3 ubiquitin-protein ligase MARCH11 [Cucurbita maxima]	[more]
XP_022922015.1	1.6e-113	93.59	E3 ubiquitin-protein ligase MARCH8-like [Cucurbita moschata]	[more]
XP_022152265.1	2.1e-89	76.35	uncharacterized protein LOC111020033 isoform X1 [Momordica charantia] >XP_022152...	[more]
XP_008467135.1	1.8e-88	74.27	PREDICTED: uncharacterized protein LOC103504564 isoform X1 [Cucumis melo]	[more]

BLAST of Carg26048 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01275.1	7.3e-52	49.36	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G38070.1	5.4e-39	37.97	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G14260.1	5.4e-23	32.22	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G02960.5	8.7e-21	41.44	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT3G47550.3	1.9e-20	36.57	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of Carg26048 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5XH39\|MARH8_XENLA	7.1e-04	32.95	E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis OX=8355 GN=march8 PE=2 SV=2	[more]
sp\|P40318\|DOA10_YEAST	9.2e-04	48.72	ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces cerevisiae (s...	[more]
sp\|A6NNE9\|MARHB_HUMAN	9.2e-04	41.03	E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens OX=9606 GN=MARCH11 PE=2 SV=3	[more]
sp\|Q8CBH7\|MARHB_MOUSE	9.2e-04	41.03	E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus OX=10090 GN=March11 PE=2 SV=...	[more]
sp\|A6P320\|MARHB_RAT	9.2e-04	41.03	E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus OX=10116 GN=March11 PE=...	[more]

BLAST of Carg26048 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CST7\|A0A1S3CST7_CUCME	1.2e-88	74.27	uncharacterized protein LOC103504564 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CST5\|A0A1S3CST5_CUCME	1.5e-88	74.58	uncharacterized protein LOC103504564 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DSC9\|A0A1S4DSC9_CUCME	4.3e-75	73.89	uncharacterized protein LOC103504564 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KSZ3\|A0A0A0KSZ3_CUCSA	2.2e-74	72.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571450 PE=4 SV=1	[more]
tr\|A0A2N9FP90\|A0A2N9FP90_FAGSY	3.6e-69	58.27	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16456 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR033275	MARCH-like
IPR022143	DUF3675
IPR013083	Znf_RING/FYVE/PHD
IPR011016	Znf_RING-CH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26048-RA	Carg26048-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 66..107 e-value: 4.0E-13 score: 59.6
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 67..103 e-value: 9.7E-13 score: 47.9
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 59..123 score: 17.577
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 52..116 e-value: 6.5E-15 score: 56.4
IPR022143	Protein of unknown function DUF3675	PFAM	PF12428	DUF3675	coord: 105..219 e-value: 3.7E-38 score: 130.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..287
None	No IPR available	PANTHER	PTHR23012:SF100	SUBFAMILY NOT NAMED	coord: 5..236
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 67..111 e-value: 2.32818E-16 score: 70.0488
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 63..106
IPR033275	E3 ubiquitin-protein ligase MARCH-like	PANTHER	PTHR23012	MEMBRANE ASSOCIATED RING FINGER	coord: 5..236

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26048	Cla003921	Watermelon (97103) v1	carwmB0423
Carg26048	Csa5G571450	Cucumber (Chinese Long) v2	carcuB0461
Carg26048	MELO3C005309	Melon (DHL92) v3.5.1	carmeB0436
Carg26048	ClCG01G006180	Watermelon (Charleston Gray)	carwcgB0419
Carg26048	CSPI05G19650	Wild cucumber (PI 183967)	carcpiB0465
Carg26048	Cucsa.280410	Cucumber (Gy14) v1	carcgyB0495
Carg26048	CmaCh04G020990	Cucurbita maxima (Rimu)	carcmaB0595
Carg26048	CmaCh15G009530	Cucurbita maxima (Rimu)	carcmaB0593
Carg26048	CmoCh15G009930	Cucurbita moschata (Rifu)	carcmoB0578
Carg26048	CmoCh04G022020	Cucurbita moschata (Rifu)	carcmoB0580
Carg26048	Lsi09G006550	Bottle gourd (USVL1VR-Ls)	carlsiB387
Carg26048	Cp4.1LG01g18260	Cucurbita pepo (Zucchini)	carcpeB0600
Carg26048	CsGy5G019140	Cucumber (Gy14) v2	carcgybB0437
Carg26048	MELO3C005309.2	Melon (DHL92) v3.6.1	carmedB0438
Carg26048	CsaV3_5G028480	Cucumber (Chinese Long) v3	carcucB0461
Carg26048	Cla97C01G006490	Watermelon (97103) v2	carwmbB0450
Carg26048	Bhi12G000778	Wax gourd	carwgoB0512

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26048	Carg26346	Silver-seed gourd	carcarB229

The following block(s) are covering this gene:

None