Carg26031 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26031
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ran-binding protein 1
Location	Cucurbita_argyrosperma_scaffold_296 : 118485 .. 121178 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTCTCACTTATTTTATTTCTTCTATATAAAAACCCTAATCTTTTCTTCTCTCACTTTCATTGCCTTCCCCCAAATTCCGATCCCTTTCTCTGCAACAACAAAGCTTCATCTATGGCCAGCGCCGATTCCGAACGTAGAGACACTGAGGAGTCTCCTGCCGGCGAGGATGAAGACACTGGAGCTCAAGTCGCCCCGATCGTCAAGTTGGAGGAGGTCGTCGTTACCACCGGTGAAGAAAATGAGGACGCTGTTCTCGATCTGTACGCTTTTCTCTATCTAAATCTTGTTTTTCTCAAATTTACGTTTTGGTTCGTTAGTGTGATTTGTTTCCTGCCGGTTATTCACTGTTTTAGGAAGGCAAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACACAAGGAGACTGGCAAGGTTCGCCTTGTTATGAGACAGTCTAAGACGCTTAAGATCTGCGCTAATCATCTTGGTTCGTTCTTGATTCCTTATTCCTTATGGGCATCCAATTGAGTTCCTTTGAGTTCTATAGTTAATTGTTTGGTTTTTGTGCTTTTGTAGTGCTTCCGTCAATGACGGTTCAGGAACACGCTGGAAATGATAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGAGAATTGAAAGATGAGCTTTTCTGTATCAGATTCCCATCTATTGAGAGTGAGTACAATTTTCCAACGTTTTTCCCTGAAATTATGCTGCAGGTTAGACTAGCTGATGGATTCTTTGAGGCTTTTTTTGTTTTTGGTTTTATTCTGAATCCATGATAGCAGGGAATTATCAATAAGATGATAGATGTTCTATCGTATGGCATGTTGTTGTGGTCTTTTCCTTCTCCTTATAGAACTGCTAAAATCCCTAGTTATCTAATTCACTATTCATTAAAAAAAAAAAAAACATAATTCATAAGGAGAAGGAAAAGATAGGGGTTGTCTTATTTTAATAATATAGGGTTGTCTTGGGCCTCCTCAACACTTTTTTTCCTCTTGACTTGACCATTGATAGTAATCTTTTGGATTTGAACTGACATTTTTTCTTTTAATAAGATGGGGATTGCTTGGTTTCCTTAGTTATCTAATTCTGAAAATTCTGATATCCTGATTCGTGTGTGACATTATGACAGTAGCAGAGTAGGAGTTTGGCTGCCCAAAAGAAAAAAAGTGTTGAGTTTATTTTATTTAATGAGATTTTTCTAAGAGGATTTGATTAGGAAAAGAGATCGAAGAGGAGAGTGGTTTTAATGGTGACTAGAGAAATTTTTTGTGGTGGCAACTTAGGAGATAGGTGGGTAAAGTGGAAGATGAACTGGCATTTTATTTTAGGGCATACAAAGAATTAAATTAAGTTGTTAAAGTGGGTAATTGGAGTACTTATTGTGATTAGAGGATTGCGACAATTGCAAAGTAGGAGGATTGGAAGGTGAAATGAAAGAAGCAATTGGGATTTTCTTCGTTCCCTGGGATAGGTTTGATTTGGATGGTCATAATTCCGTTGTTTTAAATTGTTTATCTAGACCAATTTAAGAAGCATATTTCACGATAAATCAAGTTCCCTGACATCTAATTCAATTGCCTTGATTTATTAGTTTAAATCATTTATCTCCTGTTGTAGGAGATCGTCCATGTCCACTCATCATAATCTTTTATTGTTGTGTCTTCAATGAGTATCTGTCAATCAAATTTACATGGGAATTAGGTTACTTATCGTTGCAACTCTTGATGAGATAGGAGCATTAGATAAATGATAAATCAAAGAGTATTCATTTTCCTTTTTGGGGGGCGGTGTGGTTGTACTTTGTCATCAATTCATGATGATAGAAGAGATCAGATTTTCTTTGAAATCTTTCAACTTCTAAACTAACAAAAGTTAAAAAGTTTTGTAGGTAACCTTTCATTCATTTGTATTAGTTGTGCTCCTAAAAATCTTGGAAGTCATACTTTCTCTAGTTTGGATACAGGCATGTTGGGGCATGCACAATTACTTTTTTAGATTTAGACGCTCGGACACTATTCATGTTCTTTATTCAATTTCTCATTTCTTTACCTGTCTTTTCTATTGTTCAACTCAACTTATTTTACTACTTTTCCTTCTTTAATTTTAATGTTATTTTAAACCAAATCTTATTTCCTTTAATTGTCCTGGAACTGATCAGTGGATATATGGGGCATATCTACGTTTTAAAAATCTAAAAATTCTACCTACACCCAAGTGTCGTTAAACATAAATCTTTGACCAAGGGTCAGAGGTTTAAATCTCCCACTCACCCATGTGGTTGAACTGCAATAAAATAAAAGTTCTAGCACTTGTAAAGATTTTTATATTGAATGTTCATCTCATCATTTTTATTCTATATTAAGAAAGATAGTTGGTTTACATTCCCTTGGTAACAAATACTCTATTTGTCTCAGACTGCAAATCTTTCATGGAAACGTTCCAAGAAATTGCCGAGTCCCAACAGAAGAAAGAGGAAAATAAAGATGCATCTGCTGCTGCTGGATTACTCGAGAAATTGAGTGTTGAAGAAAAGAAAGGTGAAGATAAAGCTGGGGAGACACCTTCGAAAACTAAGGAGGAGGATGAGGCAGAAAAATCAGATGCAGAGAAGAAGAATGATGAGTAGCCTGCTGAGG

mRNA sequence

CTCATTCTCACTTATTTTATTTCTTCTATATAAAAACCCTAATCTTTTCTTCTCTCACTTTCATTGCCTTCCCCCAAATTCCGATCCCTTTCTCTGCAACAACAAAGCTTCATCTATGGCCAGCGCCGATTCCGAACGTAGAGACACTGAGGAGTCTCCTGCCGGCGAGGATGAAGACACTGGAGCTCAAGTCGCCCCGATCGTCAAGTTGGAGGAGGTCGTCGTTACCACCGGTGAAGAAAATGAGGACGCTGTTCTCGATCTGAAGGCAAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACACAAGGAGACTGGCAAGGTTCGCCTTGTTATGAGACAGTCTAAGACGCTTAAGATCTGCGCTAATCATCTTGTGCTTCCGTCAATGACGGTTCAGGAACACGCTGGAAATGATAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGAGAATTGAAAGATGAGCTTTTCTGTATCAGATTCCCATCTATTGAGAACTGCAAATCTTTCATGGAAACGTTCCAAGAAATTGCCGAGTCCCAACAGAAGAAAGAGGAAAATAAAGATGCATCTGCTGCTGCTGGATTACTCGAGAAATTGAGTGTTGAAGAAAAGAAAGGTGAAGATAAAGCTGGGGAGACACCTTCGAAAACTAAGGAGGAGGATGAGGCAGAAAAATCAGATGCAGAGAAGAAGAATGATGAGTAGCCTGCTGAGG

Coding sequence (CDS)

ATGGCCAGCGCCGATTCCGAACGTAGAGACACTGAGGAGTCTCCTGCCGGCGAGGATGAAGACACTGGAGCTCAAGTCGCCCCGATCGTCAAGTTGGAGGAGGTCGTCGTTACCACCGGTGAAGAAAATGAGGACGCTGTTCTCGATCTGAAGGCAAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACACAAGGAGACTGGCAAGGTTCGCCTTGTTATGAGACAGTCTAAGACGCTTAAGATCTGCGCTAATCATCTTGTGCTTCCGTCAATGACGGTTCAGGAACACGCTGGAAATGATAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGAGAATTGAAAGATGAGCTTTTCTGTATCAGATTCCCATCTATTGAGAACTGCAAATCTTTCATGGAAACGTTCCAAGAAATTGCCGAGTCCCAACAGAAGAAAGAGGAAAATAAAGATGCATCTGCTGCTGCTGGATTACTCGAGAAATTGAGTGTTGAAGAAAAGAAAGGTGAAGATAAAGCTGGGGAGACACCTTCGAAAACTAAGGAGGAGGATGAGGCAGAAAAATCAGATGCAGAGAAGAAGAATGATGAGTAG

Protein sequence

MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVEEKKGEDKAGETPSKTKEEDEAEKSDAEKKNDE

Homology

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BLAST of Carg26031 vs. NCBI nr
Match: XP_022964855.1 (ran-binding protein 1 homolog a-like [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 1.2e-94
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MASADSERRDTEE+PAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD
Sbjct: 1   MASADSERRDTEEAPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180

Query: 181 EK 183
           EK
Sbjct: 181 EK 182

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BLAST of Carg26031 vs. NCBI nr
Match: XP_023519268.1 (ran-binding protein 1 homolog a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 1.2e-94
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MASADSERRDTEE+PAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD
Sbjct: 1   MASADSERRDTEEAPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180

Query: 181 EK 183
           EK
Sbjct: 181 EK 182

[Close]

BLAST of Carg26031 vs. NCBI nr
Match: XP_022970594.1 (ran-binding protein 1 homolog a-like [Cucurbita maxima])

HSP 1 Score: 354.4 bits (908), Expect = 2.7e-94
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MASADSERRDTEE+PAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD
Sbjct: 1   MASADSERRDTEEAPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDAS+AAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASSAAGLLEKLSVE 180

Query: 181 EK 183
           EK
Sbjct: 181 EK 182

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BLAST of Carg26031 vs. NCBI nr
Match: XP_004145252.1 (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus] >KGN65825.1 hypothetical protein Csa_1G532330 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 4.5e-89
Identity = 172/182 (94.51%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MAS DSERRD EE+PAGEDEDTGAQVAPIVKLE V VTTGEE+ED VLDLKAKLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 EK 183
           EK
Sbjct: 181 EK 182

[Close]

BLAST of Carg26031 vs. NCBI nr
Match: XP_008457356.1 (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 5.9e-89
Identity = 172/182 (94.51%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MA++DSERRD EE+ AGEDEDTGAQVAPIVKLE V VTTGEE+EDAVLDLKAKLYRFDKD
Sbjct: 1   MATSDSERRDDEEAHAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLEKLSVE 180

Query: 181 EK 183
           EK
Sbjct: 181 EK 182

[Close]

BLAST of Carg26031 vs. TAIR10
Match: AT2G30060.1 (Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 265.0 bits (676), Expect = 4.0e-71
Identity = 132/178 (74.16%), Postives = 150/178 (84.27%), Query Frame = 0


Query: 5   DSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKDGNQW 64
           + E RD EE+ A EDEDTGAQVAPIV+LEEV VTTGEE+ED +LDLK+KLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   M+VQEHAGNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVEEK 183
           +DGELKDELFCIRF S+ENCK+FM+ F+E+AE              AGLLEKL+VEEK
Sbjct: 129 SDGELKDELFCIRFASVENCKAFMQKFKEVAEXXXXXXXXXXXXXXAGLLEKLTVEEK 186

[Close]

BLAST of Carg26031 vs. TAIR10
Match: AT5G58590.1 (RAN binding protein 1)

HSP 1 Score: 260.4 bits (664), Expect = 9.8e-70
Identity = 130/165 (78.79%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MASADSERRDTE-ESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDK 60
           MAS + ER + E E+   EDEDTGAQVAPIV+LEEV VTTGEE+EDAVLDLK+K+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   M+VQEH+GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEEN 165
           HATDF+DGELKDELFCIRF SIENCK+FME F EIAESQQ  +E+
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKES 165

[Close]

BLAST of Carg26031 vs. TAIR10
Match: AT1G07140.1 (Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 238.8 bits (608), Expect = 3.0e-63
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 22  TGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKDGNQWKERGAGTVKFLKHKETG 81
           TGAQVAPIV+LEEV VTTGEE+EDAVLDLK+KLYRFDKD NQWKERGAGTVKFLKHK TG
Sbjct: 24  TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTG 83

Query: 82  KVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSI 141
           K+RLVMRQSKTLKICANH V   M+VQEH GN+KSCVWHA DFADGELKDELFCIRF SI
Sbjct: 84  KIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASI 143

Query: 142 ENCKSFMETFQEIA 156
           ENCK+FM+ F+E+A
Sbjct: 144 ENCKTFMQKFKEVA 157

[Close]

BLAST of Carg26031 vs. Swiss-Prot
Match: sp|Q8RWG8|RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 7.1e-70
Identity = 132/178 (74.16%), Postives = 150/178 (84.27%), Query Frame = 0


Query: 5   DSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKDGNQW 64
           + E RD EE+ A EDEDTGAQVAPIV+LEEV VTTGEE+ED +LDLK+KLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   M+VQEHAGNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVEEK 183
           +DGELKDELFCIRF S+ENCK+FM+ F+E+AE              AGLLEKL+VEEK
Sbjct: 129 SDGELKDELFCIRFASVENCKAFMQKFKEVAEXXXXXXXXXXXXXXAGLLEKLTVEEK 186

[Close]

BLAST of Carg26031 vs. Swiss-Prot
Match: sp|P92985|RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.8e-68
Identity = 130/165 (78.79%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MASADSERRDTE-ESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDK 60
           MAS + ER + E E+   EDEDTGAQVAPIV+LEEV VTTGEE+EDAVLDLK+K+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   M+VQEH+GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEEN 165
           HATDF+DGELKDELFCIRF SIENCK+FME F EIAESQQ  +E+
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKES 165

[Close]

BLAST of Carg26031 vs. Swiss-Prot
Match: sp|Q9LMK7|RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.5e-62
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 22  TGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKDGNQWKERGAGTVKFLKHKETG 81
           TGAQVAPIV+LEEV VTTGEE+EDAVLDLK+KLYRFDKD NQWKERGAGTVKFLKHK TG
Sbjct: 24  TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTG 83

Query: 82  KVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSI 141
           K+RLVMRQSKTLKICANH V   M+VQEH GN+KSCVWHA DFADGELKDELFCIRF SI
Sbjct: 84  KIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASI 143

Query: 142 ENCKSFMETFQEIA 156
           ENCK+FM+ F+E+A
Sbjct: 144 ENCKTFMQKFKEVA 157

[Close]

BLAST of Carg26031 vs. Swiss-Prot
Match: sp|Q09717|RANG_SCHPO (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sbp1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-31
Identity = 68/134 (50.75%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 28  PIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVM 87
           PIVKL  V   T EE E     ++AKL+RFDK  ++WKERG G  + LKHKETGK RLVM
Sbjct: 77  PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVM 136

Query: 88  RQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH-ATDFADGELKDELFCIRFPSIENCKS 147
           R+ KTLK+CANHL++P M +  + G+D+S VW  A D ++GE   E F IRF + EN   
Sbjct: 137 RRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANL 196

Query: 148 FMETFQEIAESQQK 161
           F E F++  E   K
Sbjct: 197 FKENFEKYQEENAK 210

[Close]

BLAST of Carg26031 vs. Swiss-Prot
Match: sp|P43487|RANG_HUMAN (Ran-specific GTPase-activating protein OS=Homo sapiens OX=9606 GN=RANBP1 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.2e-30
Identity = 82/192 (42.71%), Postives = 114/192 (59.38%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDT-GAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRF-- 60
           MA+A     D + S    DE     Q  PIV L E  + T EE+E+ +  ++AKL+RF  
Sbjct: 1   MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 60

Query: 61  DKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSC 120
           + D  +WKERG G VK LKHKE G +RL+MR+ KTLKICANH + P M ++ +AG+D++ 
Sbjct: 61  ENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 120

Query: 121 VWHA-TDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKE------ENKDASAA 180
           VW+   DFAD   K EL  IRF + EN + F   F+E  +  +++E      +N  A   
Sbjct: 121 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKV 180

Query: 181 AGLLEKLSVEEK 183
           A  LE LSV+E+
Sbjct: 181 AEKLEALSVKEE 192

[Close]

BLAST of Carg26031 vs. TrEMBL
Match: tr|A0A0A0LV78|A0A0A0LV78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532330 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 3.0e-89
Identity = 172/182 (94.51%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MAS DSERRD EE+PAGEDEDTGAQVAPIVKLE V VTTGEE+ED VLDLKAKLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 EK 183
           EK
Sbjct: 181 EK 182

[Close]

BLAST of Carg26031 vs. TrEMBL
Match: tr|A0A1S3C5F4|A0A1S3C5F4_CUCME (ran-binding protein 1 homolog a-like OS=Cucumis melo OX=3656 GN=LOC103497064 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 3.9e-89
Identity = 172/182 (94.51%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MA++DSERRD EE+ AGEDEDTGAQVAPIVKLE V VTTGEE+EDAVLDLKAKLYRFDKD
Sbjct: 1   MATSDSERRDDEEAHAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLEKLSVE 180

Query: 181 EK 183
           EK
Sbjct: 181 EK 182

[Close]

BLAST of Carg26031 vs. TrEMBL
Match: tr|A0A1S3C5A9|A0A1S3C5A9_CUCME (ran-binding protein 1 homolog a OS=Cucumis melo OX=3656 GN=LOC103497065 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 161/181 (88.95%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MAS+D+ERR+ EE+PA EDEDTGAQVAPIVKLE V VTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCK+FMETFQE+AESQ+KK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

[Close]

BLAST of Carg26031 vs. TrEMBL
Match: tr|B5AJV3|B5AJV3_CUCMN (Ran-binding protein 1 OS=Cucumis melo var. cantalupensis OX=3658 PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 161/182 (88.46%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MAS+D+ERR+ EE+PA EDEDTGAQVAPIVKLE V VTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCK+FMETFQE+AESQ+KK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 EK 183
           ++
Sbjct: 181 DE 182

[Close]

BLAST of Carg26031 vs. TrEMBL
Match: tr|A0A0A0LXN6|A0A0A0LXN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532320 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 161/181 (88.95%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MASADSERRDTEESPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60
           MAS+D+ERR+ EE+PA EDEDTGAQVAPIVKLE V VTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCK+FMETFQE+AESQ+KK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 E 182
           +
Sbjct: 181 D 181

The following BLAST results are available for this feature:

BLAST of Carg26031 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964855.1	1.2e-94	99.45	ran-binding protein 1 homolog a-like [Cucurbita moschata]	[more]
XP_023519268.1	1.2e-94	99.45	ran-binding protein 1 homolog a-like [Cucurbita pepo subsp. pepo]	[more]
XP_022970594.1	2.7e-94	98.90	ran-binding protein 1 homolog a-like [Cucurbita maxima]	[more]
XP_004145252.1	4.5e-89	94.51	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus] >KGN65825.1 hy...	[more]
XP_008457356.1	5.9e-89	94.51	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo]	[more]

BLAST of Carg26031 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30060.1	4.0e-71	74.16	Pleckstrin homology (PH) domain superfamily protein	[more]
AT5G58590.1	9.8e-70	78.79	RAN binding protein 1	[more]
AT1G07140.1	3.0e-63	84.33	Pleckstrin homology (PH) domain superfamily protein	[more]

BLAST of Carg26031 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RWG8\|RBP1B_ARATH	7.1e-70	74.16	Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 ...	[more]
sp\|P92985\|RBP1C_ARATH	1.8e-68	78.79	Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 ...	[more]
sp\|Q9LMK7\|RBP1A_ARATH	5.5e-62	84.33	Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 ...	[more]
sp\|Q09717\|RANG_SCHPO	2.2e-31	50.75	Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 97...	[more]
sp\|P43487\|RANG_HUMAN	4.2e-30	42.71	Ran-specific GTPase-activating protein OS=Homo sapiens OX=9606 GN=RANBP1 PE=1 SV...	[more]

BLAST of Carg26031 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV78\|A0A0A0LV78_CUCSA	3.0e-89	94.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532330 PE=4 SV=1	[more]
tr\|A0A1S3C5F4\|A0A1S3C5F4_CUCME	3.9e-89	94.51	ran-binding protein 1 homolog a-like OS=Cucumis melo OX=3656 GN=LOC103497064 PE=...	[more]
tr\|A0A1S3C5A9\|A0A1S3C5A9_CUCME	1.5e-85	88.95	ran-binding protein 1 homolog a OS=Cucumis melo OX=3656 GN=LOC103497065 PE=4 SV=...	[more]
tr\|B5AJV3\|B5AJV3_CUCMN	1.5e-85	88.46	Ran-binding protein 1 OS=Cucumis melo var. cantalupensis OX=3658 PE=2 SV=1	[more]
tr\|A0A0A0LXN6\|A0A0A0LXN6_CUCSA	1.5e-85	88.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532320 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011993	PH-like_dom_sf
IPR000156	Ran_bind_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26031-RA	Carg26031-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 194..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..212
None	No IPR available	PANTHER	PTHR23138:SF107	SUBFAMILY NOT NAMED	coord: 6..211
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 6..211
None	No IPR available	CDD	cd13179	RanBD_RanBP1	coord: 23..156 e-value: 2.96212E-68 score: 207.036
None	No IPR available	SUPERFAMILY	SSF50729	PH domain-like	coord: 24..161
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 26..154 e-value: 3.3E-42 score: 156.2
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 37..154 e-value: 4.1E-41 score: 140.0
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 25..160 score: 34.768
IPR011993	PH-like domain superfamily	GENE3D	G3DSA:2.30.29.30		coord: 10..174 e-value: 7.4E-54 score: 183.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26031	Cucurbita pepo (Zucchini)	carcpeB0877
Carg26031	Cucurbita pepo (Zucchini)	carcpeB0878
Carg26031	Silver-seed gourd	carcarB497
Carg26031	Cucumber (Gy14) v2	carcgybB0614
Carg26031	Cucumber (Gy14) v1	carcgyB0691
Carg26031	Cucurbita maxima (Rimu)	carcmaB0866
Carg26031	Cucurbita maxima (Rimu)	carcmaB0868
Carg26031	Cucurbita moschata (Rifu)	carcmoB0843
Carg26031	Cucurbita moschata (Rifu)	carcmoB0845
Carg26031	Wild cucumber (PI 183967)	carcpiB0648
Carg26031	Cucumber (Chinese Long) v2	carcuB0641
Carg26031	Cucumber (Chinese Long) v3	carcucB0649
Carg26031	Bottle gourd (USVL1VR-Ls)	carlsiB562
Carg26031	Melon (DHL92) v3.5.1	carmeB0618
Carg26031	Melon (DHL92) v3.6.1	carmedB0625
Carg26031	Watermelon (Charleston Gray)	carwcgB0599
Carg26031	Watermelon (97103) v1	carwmB0614
Carg26031	Watermelon (97103) v2	carwmbB0642
Carg26031	Wax gourd	carwgoB0734