Carg25989 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25989
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	Cucurbita_argyrosperma_scaffold_311 : 145888 .. 146818 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGATTTGACTGTGCTTGGACTCACGTTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGTCAACGCCAAGTTACTGAGCGCCGGCCGCCGCCGCCGCCGCCACTGTGGGACTTCATCGGGGTCCACCTCCGGCGGGAAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACCTCCAACACGAAGCTTCGACACTTGCTCAGGTGATATAAAATCTCCAAACCCTTTCTAGATCGAAATTGCATTTTCATCCCTCGATTTTTCAAACTATTTCATTTCGATCCCGATATTTTCAAATATTATACTTTAATCCCTAAATTGTGATAATTTAATCATTTACGCTCATAAGCTTCCATGAATGTCTATCTACGTTAACAAAAAAAAACGAAATCTGCTAATTTTAAGAGTCAGATGAATCATGTACTAAAAACATGCGAGTTTCGAGTAGAAAATAAAATAAGAGGTCTTTGTCTTAATGCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA

mRNA sequence

ATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGATTTGACTGTGCTTGGACTCACGTTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGTCAACGCCAAGTTACTGAGCGCCGGCCGCCGCCGCCGCCGCCACTGTGGGACTTCATCGGGGTCCACCTCCGGCGGGAAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACCTCCAACACGAAGCTTCGACACTTGCTCAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA

Coding sequence (CDS)

ATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGATTTGACTGTGCTTGGACTCACGTTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGTCAACGCCAAGTTACTGAGCGCCGGCCGCCGCCGCCGCCGCCACTGTGGGACTTCATCGGGGTCCACCTCCGGCGGGAAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACCTCCAACACGAAGCTTCGACACTTGCTCAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA

Protein sequence

MTVGTKLRKTATTAGAGVAVKAEDLTVLGLTLKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAEAHCITNNHQFSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN

Homology

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: XP_022933450.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 100 QLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 159
           +LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM
Sbjct: 207 KLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 266

Query: 160 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN
Sbjct: 267 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 313

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: XP_022933451.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 100 QLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 159
           +LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM
Sbjct: 205 KLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 264

Query: 160 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN
Sbjct: 265 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 311

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: XP_022974160.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 2.8e-51
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 100 QLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 159
           +LPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM
Sbjct: 209 KLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 268

Query: 160 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAG SGYGNPIN
Sbjct: 269 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN 315

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: XP_022974168.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 2.8e-51
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 100 QLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 159
           +LPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM
Sbjct: 207 KLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 266

Query: 160 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAG SGYGNPIN
Sbjct: 267 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN 313

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: XP_023531847.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 100 QLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 159
           +LPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM
Sbjct: 209 KLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPM 268

Query: 160 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAG SGYGNPI+
Sbjct: 269 LSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIS 315

[Close]

BLAST of Carg25989 vs. TAIR10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-24
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 102 PEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLS 161
           P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +S
Sbjct: 311 PGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 370

Query: 162 DLHLGGGG---DGGSTSSPIID 181
           DLHLGG     +G S S+PI+D
Sbjct: 371 DLHLGGSANNHNGVSASAPILD 389

[Close]

BLAST of Carg25989 vs. TAIR10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-11
Identity = 61/177 (34.46%), Postives = 86/177 (48.59%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAEAHCITNNHQFSHFHFQYL 91
           +KSTWVPAA+RR   + LS G++ ++  G      S  K         +   ++      
Sbjct: 151 VKSTWVPAAKRRERQQQLSTGQQPQQLGG------SVPKRQRERIPARSTSMAYTRIPSN 210

Query: 92  QHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGV 151
                 +   P +V + AVF+CVRV++V+       EYAY+  V IGGHVFKG LYD G 
Sbjct: 211 NTSGLEVGNFPPEVSSSAVFRCVRVSSVD---DEEEEYAYKTAVSIGGHVFKGVLYDQGP 270

Query: 152 EAREGFPMLSD-LHLGGGGDGGSTSSPIIDPSD-VYGSSAGRGGGLAGSSGYGNPIN 207
             R      S  L+L   G   S+SSP +  ++ V GS++      A S  Y  PIN
Sbjct: 271 AERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPA-SLNYPTPIN 317

[Close]

BLAST of Carg25989 vs. TAIR10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-10
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAEAHCITNNHQFSHFHFQYL 91
           ++STWVPAA+RR   + L+  + + +      G +   +  E    T++   S    +  
Sbjct: 175 VRSTWVPAAKRRERQQQLATVQPQTQ---LPRGESVPKRHRENLPATSS---SLVCTRIP 234

Query: 92  QHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHG 151
            H    +   P +V + AVF+CVRV++VE    G  E+AYQ  V IGGH+FKG LYD G
Sbjct: 235 SHSGLEVGNFPAEVSSSAVFRCVRVSSVE---DGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Carg25989 vs. TAIR10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-10
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 99  AQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEA 154
           A  P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+
Sbjct: 195 ASFPGEVSSDALFRCVKMSGVDDGGDG--QYAYQTTVNIGGHLFKGILYDQGPES 247

[Close]

BLAST of Carg25989 vs. TAIR10
Match: AT3G54430.1 (SHI-related sequence 6)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 101 LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPML 160
           LP ++ APAVFK  RVTA+        E  YQA V I GH+FKG+L+ +GV+  + FP L
Sbjct: 123 LPGKIEAPAVFKRTRVTAISNNEQA--EIGYQATVTISGHIFKGFLHYYGVDHNKAFPCL 181

Query: 161 S 162
           S
Sbjct: 183 S 181

[Close]

BLAST of Carg25989 vs. Swiss-Prot
Match: sp|Q94CK9|LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.4e-23
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 102 PEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLS 161
           P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +S
Sbjct: 224 PGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 283

Query: 162 DLHLGGGG---DGGSTSSPIID 181
           DLHLGG     +G S S+PI+D
Sbjct: 284 DLHLGGSANNHNGVSASAPILD 302

[Close]

BLAST of Carg25989 vs. Swiss-Prot
Match: sp|Q9XGX0|SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-10
Identity = 61/177 (34.46%), Postives = 86/177 (48.59%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAEAHCITNNHQFSHFHFQYL 91
           +KSTWVPAA+RR   + LS G++ ++  G      S  K         +   ++      
Sbjct: 151 VKSTWVPAAKRRERQQQLSTGQQPQQLGG------SVPKRQRERIPARSTSMAYTRIPSN 210

Query: 92  QHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGV 151
                 +   P +V + AVF+CVRV++V+       EYAY+  V IGGHVFKG LYD G 
Sbjct: 211 NTSGLEVGNFPPEVSSSAVFRCVRVSSVD---DEEEEYAYKTAVSIGGHVFKGVLYDQGP 270

Query: 152 EAREGFPMLSD-LHLGGGGDGGSTSSPIIDPSD-VYGSSAGRGGGLAGSSGYGNPIN 207
             R      S  L+L   G   S+SSP +  ++ V GS++      A S  Y  PIN
Sbjct: 271 AERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPA-SLNYPTPIN 317

[Close]

BLAST of Carg25989 vs. Swiss-Prot
Match: sp|Q9SD40|SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAEAHCITNNHQFSHFHFQYL 91
           ++STWVPAA+RR   + L+  + + +      G +   +  E    T++   S    +  
Sbjct: 175 VRSTWVPAAKRRERQQQLATVQPQTQ---LPRGESVPKRHRENLPATSS---SLVCTRIP 234

Query: 92  QHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHG 151
            H    +   P +V + AVF+CVRV++VE    G  E+AYQ  V IGGH+FKG LYD G
Sbjct: 235 SHSGLEVGNFPAEVSSSAVFRCVRVSSVE---DGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Carg25989 vs. Swiss-Prot
Match: sp|O65517|SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-08
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 99  AQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEA 154
           A  P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+
Sbjct: 195 ASFPGEVSSDALFRCVKMSGVDDGGDG--QYAYQTTVNIGGHLFKGILYDQGPES 247

[Close]

BLAST of Carg25989 vs. Swiss-Prot
Match: sp|Q9M2U4|SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-08
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 101 LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPML 160
           LP ++ APAVFK  RVTA+        E  YQA V I GH+FKG+L+ +GV+  + FP L
Sbjct: 123 LPGKIEAPAVFKRTRVTAISNNEQA--EIGYQATVTISGHIFKGFLHYYGVDHNKAFPCL 181

Query: 161 S 162
           S
Sbjct: 183 S 181

[Close]

BLAST of Carg25989 vs. TrEMBL
Match: tr|A0A1S3BQ17|A0A1S3BQ17_CUCME (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103491981 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 100 QLPEQVRAPAVFKCVRVTAVEGGGT-GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFP 159
           +LPEQ+RAPAVFKCVRVTAVEGG + GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP
Sbjct: 203 KLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP 262

Query: 160 MLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
            +S+LHL   GDGGSTSSP+IDPSDVYGSSA RGGGLAG SGYGN IN
Sbjct: 263 TMSNLHL---GDGGSTSSPVIDPSDVYGSSATRGGGLAGGSGYGNSIN 307

[Close]

BLAST of Carg25989 vs. TrEMBL
Match: tr|A0A0A0M099|A0A0A0M099_CUCSA (Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G628000 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 91/108 (84.26%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 100 QLPEQVRAPAVFKCVRVTAVEGGGT-GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFP 159
           +LPEQ+RAPAVFKCVRVTAVEGG + GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP
Sbjct: 203 KLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP 262

Query: 160 MLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           M+S+LHL   GDGGSTSSP+IDP+DVYGSS  RGGGLAG SGYGN IN
Sbjct: 263 MMSNLHL---GDGGSTSSPVIDPADVYGSSTTRGGGLAGGSGYGNSIN 307

[Close]

BLAST of Carg25989 vs. TrEMBL
Match: tr|A0A2P5Y9X2|A0A2P5Y9X2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA08235 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 80/116 (68.97%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 93  HEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVE 152
           H+A     LP QVRAPAVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD GVE
Sbjct: 271 HQAGFKETLPGQVRAPAVFKCVRVTAVE---VGEDEYAYQAVVKIGGHVFKGFLYDQGVE 330

Query: 153 AREGFPMLSDLHLGGGG--DGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
            R+GFP +S+LHLGGG   +GGS+SSP++DPS VY   A  GGGL G S YGNPIN
Sbjct: 331 GRDGFPNISELHLGGGSGTNGGSSSSPVLDPSQVY---AATGGGLLGGSTYGNPIN 380

[Close]

BLAST of Carg25989 vs. TrEMBL
Match: tr|A0A0B0NYZ5|A0A0B0NYZ5_GOSAR (tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein OS=Gossypium arboreum OX=29729 GN=F383_03543 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.3e-32
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 101 LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPML 160
           LP QVRAPAVFKCVRVTAVEG   G +EYAYQAVVKIGGHVFKG+LYD GVE R+GFP +
Sbjct: 343 LPGQVRAPAVFKCVRVTAVEG---GEDEYAYQAVVKIGGHVFKGFLYDQGVEGRDGFPNI 402

Query: 161 SDLHLGGGG-DGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           S+LHLGGGG + GS+SSP++DPSDVY ++   GG L G  GYGNPIN
Sbjct: 403 SELHLGGGGRNAGSSSSPVLDPSDVYAATG--GGFLGGGLGYGNPIN 444

[Close]

BLAST of Carg25989 vs. TrEMBL
Match: tr|A0A2P5PWW2|A0A2P5PWW2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD36378 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.3e-32
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 101 LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPML 160
           LP QVRAPAVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD GVE REGFP +
Sbjct: 277 LPGQVRAPAVFKCVRVTAVE---DGEDEYAYQAVVKIGGHVFKGFLYDQGVEEREGFPNI 336

Query: 161 SDLHLGGGG--DGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 207
           S+LHLGGG   +GGS+SSP++DPS VY   A  GGGL G S YGNPIN
Sbjct: 337 SELHLGGGSGTNGGSSSSPVLDPSQVY---AATGGGLLGGSTYGNPIN 378

The following BLAST results are available for this feature:

BLAST of Carg25989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933450.1	3.3e-52	99.07	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022933451.1	3.3e-52	99.07	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022974160.1	2.8e-51	97.20	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022974168.1	2.8e-51	97.20	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima]	[more]
XP_023531847.1	1.1e-50	96.26	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25989 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12330.4	3.5e-24	69.51	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	4.5e-11	34.46	Lateral root primordium (LRP) protein-related	[more]
AT3G51060.1	6.5e-10	36.13	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	8.4e-10	50.91	Lateral root primordium (LRP) protein-related	[more]
AT3G54430.1	1.9e-09	49.18	SHI-related sequence 6	[more]

BLAST of Carg25989 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94CK9\|LRP1_ARATH	6.4e-23	69.51	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
sp\|Q9XGX0\|SHI_ARATH	8.1e-10	34.46	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
sp\|Q9SD40\|SRS1_ARATH	1.2e-08	36.13	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
sp\|O65517\|SRS2_ARATH	1.5e-08	50.91	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
sp\|Q9M2U4\|SRS6_ARATH	3.4e-08	49.18	Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1	[more]

BLAST of Carg25989 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQ17\|A0A1S3BQ17_CUCME	3.5e-42	85.19	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103491981 PE=4 S...	[more]
tr\|A0A0A0M099\|A0A0A0M099_CUCSA	7.8e-42	84.26	Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G628000 PE=4 SV=1	[more]
tr\|A0A2P5Y9X2\|A0A2P5Y9X2_GOSBA	1.1e-32	68.97	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA08235 PE=4 SV...	[more]
tr\|A0A0B0NYZ5\|A0A0B0NYZ5_GOSAR	3.3e-32	72.90	tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein OS=Gossypium arbor...	[more]
tr\|A0A2P5PWW2\|A0A2P5PWW2_GOSBA	7.3e-32	73.15	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD36378 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007818	SHI
IPR006511	SHI_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25989-RA	Carg25989-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 101..151 e-value: 2.1E-24 score: 83.2
None	No IPR available	PFAM	PF05142	DUF702	coord: 32..152 e-value: 7.2E-27 score: 94.6
None	No IPR available	PANTHER	PTHR31604:SF2	PROTEIN SHI RELATED SEQUENCE 6	coord: 32..197
IPR007818	SHI protein family	PANTHER	PTHR31604	FAMILY NOT NAMED	coord: 32..197

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25989	Cla007368	Watermelon (97103) v1	carwmB0892
Carg25989	Csa1G628000	Cucumber (Chinese Long) v2	carcuB0905
Carg25989	MELO3C015123	Melon (DHL92) v3.5.1	carmeB0876
Carg25989	ClCG03G012640	Watermelon (Charleston Gray)	carwcgB0864
Carg25989	CSPI01G30960	Wild cucumber (PI 183967)	carcpiB0925
Carg25989	CmoCh11G008930	Cucurbita moschata (Rifu)	carcmoB1201
Carg25989	Lsi06G005760	Bottle gourd (USVL1VR-Ls)	carlsiB807
Carg25989	Cp4.1LG04g12290	Cucurbita pepo (Zucchini)	carcpeB1240
Carg25989	CsGy1G030220	Cucumber (Gy14) v2	carcgybB0878
Carg25989	MELO3C015123.2	Melon (DHL92) v3.6.1	carmedB0884
Carg25989	CsaV3_1G043360	Cucumber (Chinese Long) v3	carcucB0928
Carg25989	Cla97C03G062920	Watermelon (97103) v2	carwmbB0928
Carg25989	Bhi02G001250	Wax gourd	carwgoB1035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None