Carg25982 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25982
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein CASP
Location	Cucurbita_argyrosperma_scaffold_311 : 92889 .. 94133 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGCACGAAATTGAGACAACTTTATCAAGTGAACGAGAACAACATATTATTGAGATCAAGAATCTGAATGCCTTGATAAATGAAAAGGTCAGTATCAATCTCAATTCTACTTCAACAATAAGCAGTTAACATCTAATGGATTAAGATGAGATAAATTCTCTTTGCATTCATATGGACAAAGTTGCTTACTTAAAATTGTCACCAAGTCTATGTTATCAATCACCAGGTCCAATGCACTATTTTACTTTGAATATGCCAATGACCAATTAGCCTCAACATTACAACTTTCATTGTTTGTAAGCCAGGAAGCTGCTATTGATGAGATGAAGAGAGAGCTTCAAGCGAGGCCAACAGAAAAAATGGTTGATGATCTGCGAAAAAAGTGAAGATTTTGCAAGTAACTTATCTAGCTTTTTTATGATAGAAATATTATCTACCTTACTCTCTCGAAATTCTAAATTGTCTGTGGCACATAGTTTAGGTATGAAGGAATGAATTATATTTTATTTCATAGTGTAGCGAGGTTCCTCTGCACTTTGATTCTTTGTCCCCTCAAGGACTTGCTCATTACGCAGTGCCAGTTGGATTGATTCTTCTGATGGCCATTTTTCTGGTGGTTCATTCGTTTCTCTAGTGGTCTATTCAATCATAAATGTGTTGTGAATTATGTGCGATAGTTCCTCAACAATTTGTTCTCTCTCTCACTCTCACTTTTAGATGGAGAACTTATTTATCTGTGTGAGGGCATGTTATATTTTCATCTCTTAATTCAGAAATCCCCTTTTTCTCTGTTTATAAAAAATATTGTTTTGTTGAATCTTACTTTTCGCATAGCTCATGTATAAAGTGCTTTTGATTATAGAGAACACAATTGTTCCATATAAAACATGATATGTTGTAATAATTTCAGTCAAACTATTGTTGCTAAATGTTTGAATGTCATTGCATCTTTCCGATCTTTAACATAATAATATAAAAGATTTGTGTGATCACATGAGTCCTACAATCATGAATATTATATTTTTTAAGTCATCTTAAAAAATTGTTCAGGTTTTATGCCACCAAAGTCTTCCTCTGATGAATTTGCTTGGCTTGGTAACATGTGTAGTGTATTCCTTCATCTGTGAATAACTTTACATGCATACCCAGGCTGTAGGTTATAATTCAATTGAGGCTGAAGATTGGGAGGTTGCCACCAGTGGGGAAAGAGATGAGCAAAATGGAATCTCTTCTTCTTGA

mRNA sequence

ATGGAACTGCACGAAATTGAGACAACTTTATCAAGTGAACGAGAACAACATATTATTGAGATCAAGAATCTGAATGCCTTGATAAATGAAAAGGAAGCTGCTATTGATGAGATGAAGAGAGAGCTTCAAGCGAGGCCAACAGAAAAAATGGTTGATGATCTGCGAAAAAACGAGGTTCCTCTGCACTTTGATTCTTTGTCCCCTCAAGGACTTGCTCATTACGCAGTGCCAGTTGGATTGATTCTTCTGATGGCCATTTTTCTGGTGGCTGTAGGTTATAATTCAATTGAGGCTGAAGATTGGGAGGTTGCCACCAGTGGGGAAAGAGATGAGCAAAATGGAATCTCTTCTTCTTGA

Coding sequence (CDS)

ATGGAACTGCACGAAATTGAGACAACTTTATCAAGTGAACGAGAACAACATATTATTGAGATCAAGAATCTGAATGCCTTGATAAATGAAAAGGAAGCTGCTATTGATGAGATGAAGAGAGAGCTTCAAGCGAGGCCAACAGAAAAAATGGTTGATGATCTGCGAAAAAACGAGGTTCCTCTGCACTTTGATTCTTTGTCCCCTCAAGGACTTGCTCATTACGCAGTGCCAGTTGGATTGATTCTTCTGATGGCCATTTTTCTGGTGGCTGTAGGTTATAATTCAATTGAGGCTGAAGATTGGGAGGTTGCCACCAGTGGGGAAAGAGATGAGCAAAATGGAATCTCTTCTTCTTGA

Protein sequence

MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVPLHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGERDEQNGISSS

Homology

[Close]

BLAST of Carg25982 vs. NCBI nr
Match: XP_022988038.1 (protein CASP [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 74/108 (68.52%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH+IETTLSSEREQH+IEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRK    
Sbjct: 320 MELHKIETTLSSEREQHLIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKK--- 379

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 380 ------------------------VKILQAVGYNSIEAEDWEVATSGE 400

[Close]

BLAST of Carg25982 vs. NCBI nr
Match: XP_011660168.1 (PREDICTED: protein CASP [Cucumis sativus] >KGN66558.1 hypothetical protein Csa_1G629150 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 5.7e-25
Identity = 73/108 (67.59%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IETTLSSEREQHIIEIKNLNALINEKE AIDEMKRELQ+RPTEKMVDDLRK    
Sbjct: 320 MELHNIETTLSSEREQHIIEIKNLNALINEKETAIDEMKRELQSRPTEKMVDDLRKK--- 379

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 380 ------------------------VKILQAVGYNSIEAEDWEVATSGE 400

[Close]

BLAST of Carg25982 vs. NCBI nr
Match: XP_022961112.1 (protein CASP [Cucurbita moschata])

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 72/108 (66.67%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH+IETTLSSEREQH+IEIKNLNA INEKEAAIDEMK+ELQARPTEKMVDDLRK    
Sbjct: 320 MELHKIETTLSSEREQHLIEIKNLNASINEKEAAIDEMKKELQARPTEKMVDDLRKK--- 379

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 380 ------------------------VKILQAVGYNSIEAEDWEVATSGE 400

[Close]

BLAST of Carg25982 vs. NCBI nr
Match: XP_022153265.1 (protein CASP isoform X1 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-24
Identity = 72/108 (66.67%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IETTLSSEREQH+IEIKNLNALINEKEAAIDEMK+ELQARPTEKMVDDLRK    
Sbjct: 320 MELHNIETTLSSEREQHMIEIKNLNALINEKEAAIDEMKKELQARPTEKMVDDLRKK--- 379

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVAT GE
Sbjct: 380 ------------------------VKILQAVGYNSIEAEDWEVATRGE 400

[Close]

BLAST of Carg25982 vs. NCBI nr
Match: XP_022153266.1 (protein CASP isoform X2 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-24
Identity = 72/108 (66.67%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IETTLSSEREQH+IEIKNLNALINEKEAAIDEMK+ELQARPTEKMVDDLRK    
Sbjct: 320 MELHNIETTLSSEREQHMIEIKNLNALINEKEAAIDEMKKELQARPTEKMVDDLRKK--- 379

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVAT GE
Sbjct: 380 ------------------------VKILQAVGYNSIEAEDWEVATRGE 400

[Close]

BLAST of Carg25982 vs. TAIR10
Match: AT3G18480.1 (CCAAT-displacement protein alternatively spliced product)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-19
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           ME+H +ET L++ERE H+ EIK LN+L+N+K+  I+EMK+ELQ RP+ K+VDDLRK    
Sbjct: 323 MEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEMKKELQERPSAKLVDDLRKK--- 382

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDW+ AT+GE
Sbjct: 383 ------------------------VKILQAVGYNSIEAEDWDAATTGE 403

[Close]

BLAST of Carg25982 vs. Swiss-Prot
Match: sp|Q9LS42|CASP_ARATH (Protein CASP OS=Arabidopsis thaliana OX=3702 GN=CASP PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-18
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           ME+H +ET L++ERE H+ EIK LN+L+N+K+  I+EMK+ELQ RP+ K+VDDLRK    
Sbjct: 323 MEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEMKKELQERPSAKLVDDLRKK--- 382

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDW+ AT+GE
Sbjct: 383 ------------------------VKILQAVGYNSIEAEDWDAATTGE 403

[Close]

BLAST of Carg25982 vs. TrEMBL
Match: tr|A0A0A0LXT3|A0A0A0LXT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629150 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25
Identity = 73/108 (67.59%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IETTLSSEREQHIIEIKNLNALINEKE AIDEMKRELQ+RPTEKMVDDLRK    
Sbjct: 320 MELHNIETTLSSEREQHIIEIKNLNALINEKETAIDEMKRELQSRPTEKMVDDLRKK--- 379

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 380 ------------------------VKILQAVGYNSIEAEDWEVATSGE 400

[Close]

BLAST of Carg25982 vs. TrEMBL
Match: tr|A0A1S3BQ05|A0A1S3BQ05_CUCME (LOW QUALITY PROTEIN: protein CASP OS=Cucumis melo OX=3656 GN=LOC103491970 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 72/108 (66.67%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IET LSSEREQHIIEIKNLNALINEKE AIDEMKRELQ+RPTEKMVDDLRK    
Sbjct: 320 MELHNIETILSSEREQHIIEIKNLNALINEKETAIDEMKRELQSRPTEKMVDDLRKK--- 379

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 380 ------------------------VKILQAVGYNSIEAEDWEVATSGE 400

[Close]

BLAST of Carg25982 vs. TrEMBL
Match: tr|B9I2R2|B9I2R2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G061000v3 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IETTL++EREQHI EIK LN L+NEKEAA++EMK+ELQA+PTEK+VDDLRK    
Sbjct: 316 MELHNIETTLTNEREQHINEIKKLNILLNEKEAALEEMKKELQAKPTEKLVDDLRKK--- 375

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 376 ------------------------VKILQAVGYNSIEAEDWEVATSGE 396

[Close]

BLAST of Carg25982 vs. TrEMBL
Match: tr|A0A2K1Y9N6|A0A2K1Y9N6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G061000v3 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IETTL++EREQHI EIK LN L+NEKEAA++EMK+ELQA+PTEK+VDDLRK    
Sbjct: 316 MELHNIETTLTNEREQHINEIKKLNILLNEKEAALEEMKKELQAKPTEKLVDDLRKK--- 375

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 376 ------------------------VKILQAVGYNSIEAEDWEVATSGE 396

[Close]

BLAST of Carg25982 vs. TrEMBL
Match: tr|A0A2K1Y9N5|A0A2K1Y9N5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G061000v3 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1   MELHEIETTLSSEREQHIIEIKNLNALINEKEAAIDEMKRELQARPTEKMVDDLRKNEVP 60
           MELH IETTL++EREQHI EIK LN L+NEKEAA++EMK+ELQA+PTEK+VDDLRK    
Sbjct: 316 MELHNIETTLTNEREQHINEIKKLNILLNEKEAALEEMKKELQAKPTEKLVDDLRKK--- 375

Query: 61  LHFDSLSPQGLAHYAVPVGLILLMAIFLVAVGYNSIEAEDWEVATSGE 109
                                      L AVGYNSIEAEDWEVATSGE
Sbjct: 376 ------------------------VKILQAVGYNSIEAEDWEVATSGE 396

The following BLAST results are available for this feature:

BLAST of Carg25982 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988038.1	1.2e-25	68.52	protein CASP [Cucurbita maxima]	[more]
XP_011660168.1	5.7e-25	67.59	PREDICTED: protein CASP [Cucumis sativus] >KGN66558.1 hypothetical protein Csa_1...	[more]
XP_022961112.1	1.3e-24	66.67	protein CASP [Cucurbita moschata]	[more]
XP_022153265.1	1.7e-24	66.67	protein CASP isoform X1 [Momordica charantia]	[more]
XP_022153266.1	1.7e-24	66.67	protein CASP isoform X2 [Momordica charantia]	[more]

BLAST of Carg25982 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18480.1	2.0e-19	47.22	CCAAT-displacement protein alternatively spliced product	[more]

BLAST of Carg25982 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LS42\|CASP_ARATH	3.5e-18	47.22	Protein CASP OS=Arabidopsis thaliana OX=3702 GN=CASP PE=1 SV=2	[more]

BLAST of Carg25982 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXT3\|A0A0A0LXT3_CUCSA	3.8e-25	67.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629150 PE=4 SV=1	[more]
tr\|A0A1S3BQ05\|A0A1S3BQ05_CUCME	1.9e-24	66.67	LOW QUALITY PROTEIN: protein CASP OS=Cucumis melo OX=3656 GN=LOC103491970 PE=4 S...	[more]
tr\|B9I2R2\|B9I2R2_POPTR	3.3e-21	59.26	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G061000v3 PE=...	[more]
tr\|A0A2K1Y9N6\|A0A2K1Y9N6_POPTR	3.3e-21	59.26	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G061000v3 PE=...	[more]
tr\|A0A2K1Y9N5\|A0A2K1Y9N5_POPTR	3.3e-21	59.26	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G061000v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25982-RA	Carg25982-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..44

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25982	CmaCh11G008890	Cucurbita maxima (Rimu)	carcmaB1231
Carg25982	MELO3C015107.2	Melon (DHL92) v3.6.1	carmedB0884

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25982	Silver-seed gourd	carcarB640
Carg25982	Cucumber (Gy14) v2	carcgybB0878
Carg25982	Cucumber (Gy14) v1	carcgyB1010
Carg25982	Cucurbita maxima (Rimu)	carcmaB1230
Carg25982	Cucurbita moschata (Rifu)	carcmoB1200
Carg25982	Cucurbita moschata (Rifu)	carcmoB1201
Carg25982	Cucurbita pepo (Zucchini)	carcpeB1239
Carg25982	Cucurbita pepo (Zucchini)	carcpeB1240
Carg25982	Wild cucumber (PI 183967)	carcpiB0925
Carg25982	Cucumber (Chinese Long) v2	carcuB0905
Carg25982	Cucumber (Chinese Long) v3	carcucB0928
Carg25982	Bottle gourd (USVL1VR-Ls)	carlsiB807
Carg25982	Melon (DHL92) v3.5.1	carmeB0876
Carg25982	Watermelon (Charleston Gray)	carwcgB0864
Carg25982	Watermelon (97103) v1	carwmB0892
Carg25982	Watermelon (97103) v2	carwmbB0928
Carg25982	Wax gourd	carwgoB1035