Carg25963 (gene) Silver-seed gourd

Overview
NameCarg25963
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At2g13600-like
LocationCucurbita_argyrosperma_scaffold_284 : 130224 .. 131654 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGCCCTCACCATTTTCATATTAGACGGAGTCTCGATTCCTTCGCCAGTTTTTTGCGCCATGCTTCCCAAATCCAAAATCTCAAAGCCATTAAGAAGCTTCACGCCCAACTGCTTAGAACTCACTTCCAATTTTCCTCCCCGGATCTTCACTCTAAGCTTATACTATCCTACTCCCAAATCATCCCCAATTTTGATGCGCTAAGCTTAAGCAGCTTCTTCAAATGCATAATCCCCAGAAGTTCTTTAACCTTCAACGTAATGATTTCTGACTTTTATCGACATGGGTTTCCAGATTTTTCGTTAATGGCGTTGTCTTTCATGCATTCCAATGGGGTCCCTATCGATACGTATGCCCTCTGCAGCTCTTTGAGTGCTTGTTCTCTTGTTCAGAATCCCGTGTATGGAAAACAGATGCACGCCTTCGTGGGGAAATCAGGTTGGTTATGTAGTGTTTTTGTGGGGAGTGCGATTGTCGATATGTATGCAAAAAATTCGCTGATTAATGATGCAGTGAAAGTGTTTGATGAAATTCCTGTGAAGAATACGGTGTGCGCAAATGCATTATTGGCTGGATATGGCGACGCTAGCATGTGGATTGATGGACTTGAATTGCTACGGAAGATGTACGTTTTGGATTTGAAGTATGACCAGTTCACTCTATCAGCTTCTTTACGTGCGTGCACTGGTTTATCTGCAATTGCTTTAGGTAAGCAAGTGCATGCTTATCTACTACGAACGGTTTATGATATTTCGAGTGATGTTCATCTACAAAGCACATTGATTGAAATGTATGGGAAGAGTGGCATGGTGGAAAAAGCATGGAATGTGTTTGTTTTCGCAGGACTTGGACAAAAAGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGCATATGGTAGAAACGGATGTTACATAAGAGTAATTGAATTGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGGGTGGCTTTTGTGACAGTGATATCAGCTTGTGGTCACACTGGTCAGGTGAATCTTGGAGTCAAGTATTTTGACTCCATGCAGAGTGTTTTTGGGTTGGAACCTGGTCAAGAGCACTATAGTTGTTTGGTTGACTTGCTCTGTAGAGCTGGGGAATTGGAAAAAGCATGGAAGCTTGTAAGTGGTATGAAAAGTAGCGATTACAATGTACCTCTATGGGGTGCTTTACTCCGAGCTTGCTTGGAACATGGAAATATTAAGTTGGGTAATTTGGCAGCTCGTAGGGCACTTGAATTGGATCCTACGAACGCTGGGATATTCGTTATGCTATCAAATTTGTATTCTGGTTTTGGCTTGTGGAATGAGATAGAGCATTTGAGGGGATTTGTGAGAAGGGAAGGGCTGCATAAAGGTGTTGGATGTAGCTGGATAGAGACCACAAGTTGA

mRNA sequence

ATGTCGAGCCCTCACCATTTTCATATTAGACGGAGTCTCGATTCCTTCGCCAGTTTTTTGCGCCATGCTTCCCAAATCCAAAATCTCAAAGCCATTAAGAAGCTTCACGCCCAACTGCTTAGAACTCACTTCCAATTTTCCTCCCCGGATCTTCACTCTAAGCTTATACTATCCTACTCCCAAATCATCCCCAATTTTGATGCGCTAAGCTTAAGCAGCTTCTTCAAATGCATAATCCCCAGAAGTTCTTTAACCTTCAACGTAATGATTTCTGACTTTTATCGACATGGGTTTCCAGATTTTTCGTTAATGGCGTTGTCTTTCATGCATTCCAATGGGGTCCCTATCGATACGTATGCCCTCTGCAGCTCTTTGAGTGCTTGTTCTCTTGTTCAGAATCCCGTGTATGGAAAACAGATGCACGCCTTCGTGGGGAAATCAGGTTGGTTATGTAGTGTTTTTGTGGGGAGTGCGATTGTCGATATGTATGCAAAAAATTCGCTGATTAATGATGCAGTGAAAGTGTTTGATGAAATTCCTGTGAAGAATACGGTGTGCGCAAATGCATTATTGGCTGGATATGGCGACGCTAGCATGTGGATTGATGGACTTGAATTGCTACGGAAGATGTACGTTTTGGATTTGAAGTATGACCAGTTCACTCTATCAGCTTCTTTACGTGCGTGCACTGGTTTATCTGCAATTGCTTTAGGTAAGCAAGTGCATGCTTATCTACTACGAACGGTTTATGATATTTCGAGTGATGTTCATCTACAAAGCACATTGATTGAAATGTATGGGAAGAGTGGCATGGTGGAAAAAGCATGGAATGTGTTTGTTTTCGCAGGACTTGGACAAAAAGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGCATATGGTAGAAACGGATGTTACATAAGAGTAATTGAATTGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGGGTGGCTTTTGTGACAGTGATATCAGCTTGTGGTCACACTGGTCAGGTGAATCTTGGAGTCAAGTATTTTGACTCCATGCAGAGTGTTTTTGGGTTGGAACCTGGTCAAGAGCACTATAGTTGTTTGGTTGACTTGCTCTGTAGAGCTGGGGAATTGGAAAAAGCATGGAAGCTTGTAAGTGGTATGAAAAGTAGCGATTACAATGTACCTCTATGGGGTGCTTTACTCCGAGCTTGCTTGGAACATGGAAATATTAAGTTGGGTAATTTGGCAGCTCGTAGGGCACTTGAATTGGATCCTACGAACGCTGGGATATTCGTTATGCTATCAAATTTGTATTCTGGTTTTGGCTTGTGGAATGAGATAGAGCATTTGAGGGGATTTGTGAGAAGGGAAGGGCTGCATAAAGGTGTTGGATGTAGCTGGATAGAGACCACAAGTTGA

Coding sequence (CDS)

ATGTCGAGCCCTCACCATTTTCATATTAGACGGAGTCTCGATTCCTTCGCCAGTTTTTTGCGCCATGCTTCCCAAATCCAAAATCTCAAAGCCATTAAGAAGCTTCACGCCCAACTGCTTAGAACTCACTTCCAATTTTCCTCCCCGGATCTTCACTCTAAGCTTATACTATCCTACTCCCAAATCATCCCCAATTTTGATGCGCTAAGCTTAAGCAGCTTCTTCAAATGCATAATCCCCAGAAGTTCTTTAACCTTCAACGTAATGATTTCTGACTTTTATCGACATGGGTTTCCAGATTTTTCGTTAATGGCGTTGTCTTTCATGCATTCCAATGGGGTCCCTATCGATACGTATGCCCTCTGCAGCTCTTTGAGTGCTTGTTCTCTTGTTCAGAATCCCGTGTATGGAAAACAGATGCACGCCTTCGTGGGGAAATCAGGTTGGTTATGTAGTGTTTTTGTGGGGAGTGCGATTGTCGATATGTATGCAAAAAATTCGCTGATTAATGATGCAGTGAAAGTGTTTGATGAAATTCCTGTGAAGAATACGGTGTGCGCAAATGCATTATTGGCTGGATATGGCGACGCTAGCATGTGGATTGATGGACTTGAATTGCTACGGAAGATGTACGTTTTGGATTTGAAGTATGACCAGTTCACTCTATCAGCTTCTTTACGTGCGTGCACTGGTTTATCTGCAATTGCTTTAGGTAAGCAAGTGCATGCTTATCTACTACGAACGGTTTATGATATTTCGAGTGATGTTCATCTACAAAGCACATTGATTGAAATGTATGGGAAGAGTGGCATGGTGGAAAAAGCATGGAATGTGTTTGTTTTCGCAGGACTTGGACAAAAAGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGCATATGGTAGAAACGGATGTTACATAAGAGTAATTGAATTGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGGGTGGCTTTTGTGACAGTGATATCAGCTTGTGGTCACACTGGTCAGGTGAATCTTGGAGTCAAGTATTTTGACTCCATGCAGAGTGTTTTTGGGTTGGAACCTGGTCAAGAGCACTATAGTTGTTTGGTTGACTTGCTCTGTAGAGCTGGGGAATTGGAAAAAGCATGGAAGCTTGTAAGTGGTATGAAAAGTAGCGATTACAATGTACCTCTATGGGGTGCTTTACTCCGAGCTTGCTTGGAACATGGAAATATTAAGTTGGGTAATTTGGCAGCTCGTAGGGCACTTGAATTGGATCCTACGAACGCTGGGATATTCGTTATGCTATCAAATTTGTATTCTGGTTTTGGCTTGTGGAATGAGATAGAGCATTTGAGGGGATTTGTGAGAAGGGAAGGGCTGCATAAAGGTGTTGGATGTAGCTGGATAGAGACCACAAGTTGA

Protein sequence

MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS
Homology
[Close]
BLAST of Carg25963 vs. NCBI nr
Match: XP_022944055.1 (pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita moschata])

HSP 1 Score: 967.2 bits (2499), Expect = 2.0e-278
Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 0 

Query: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60
           MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS
Sbjct: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60

Query: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120
           QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA
Sbjct: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120

Query: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180
           LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP
Sbjct: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180

Query: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240
           VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ
Sbjct: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240

Query: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300
           VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM
Sbjct: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300

Query: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360
           LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG
Sbjct: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360

Query: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 420
           LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA
Sbjct: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 420

Query: 421 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS
Sbjct: 421 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 476

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BLAST of Carg25963 vs. NCBI nr
Match: XP_023512242.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 928.7 bits (2399), Expect = 7.9e-267
Identity = 456/476 (95.80%), Postives = 468/476 (98.32%), Query Frame = 0 

Query: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60
           MS+ HHFHIRRSLDSFASFLRH+SQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS
Sbjct: 14  MSNLHHFHIRRSLDSFASFLRHSSQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 73

Query: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120
           QI+PNFDA SLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSL+ALSFMHSNGVPIDTYA
Sbjct: 74  QIVPNFDAQSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLIALSFMHSNGVPIDTYA 133

Query: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180
           LCSSLSACSLVQN VYG+QMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP
Sbjct: 134 LCSSLSACSLVQNAVYGQQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 193

Query: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240
           VKNTVCANALLAGYGDA MWIDGLELLRKM+VL+LKYDQFTLSASLRACTGLSAIALGKQ
Sbjct: 194 VKNTVCANALLAGYGDAGMWIDGLELLRKMHVLNLKYDQFTLSASLRACTGLSAIALGKQ 253

Query: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300
           VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLG KEDGKRDIIMWTSM
Sbjct: 254 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGHKEDGKRDIIMWTSM 313

Query: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360
           LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG
Sbjct: 314 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 373

Query: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 420
           LEPGQEHYSCLVDLLCRAGEL+KAWKLVS +KSSD+NVPLWGALLRACLEHGNIKLGNLA
Sbjct: 374 LEPGQEHYSCLVDLLCRAGELDKAWKLVSDIKSSDHNVPLWGALLRACLEHGNIKLGNLA 433

Query: 421 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           AR ALELDPTNAGIFVMLSNLY+GFGLWNEIEHLR FVRREGL+KGVGCSWIETTS
Sbjct: 434 ARMALELDPTNAGIFVMLSNLYAGFGLWNEIEHLREFVRREGLYKGVGCSWIETTS 489

[Close]
BLAST of Carg25963 vs. NCBI nr
Match: XP_004147057.1 (PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucumis sativus] >KGN61864.1 hypothetical protein Csa_2G258600 [Cucumis sativus])

HSP 1 Score: 823.5 bits (2126), Expect = 3.6e-235
Identity = 400/466 (85.84%), Postives = 429/466 (92.06%), Query Frame = 0 

Query: 11  RSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALS 70
           RSLDSFASF  H+SQ +NLK IKK+HA LLRTHFQF SP+LHSKLILSYSQIIPNFDA S
Sbjct: 4   RSLDSFASFFHHSSQFKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAKS 63

Query: 71  LSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSL 130
           L+  F+CIIPR+SLTFNVMISDF RHGF DF+LM  SFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNGIFQCIIPRTSLTFNVMISDFSRHGFQDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 131 VQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANAL 190
           VQN VYGKQ+HAFVGKSGWLCSVFVGSAIVDMYAKNSLI DAV+VFDE+P+KNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 191 LAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVY 250
           LAGYG+A MW++GLELLRKM  LDLKYDQFTLSASLRACTGLSAIALGKQVHAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVY 243

Query: 251 DISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCY 310
           DI+SDVHLQSTL+EMYGK+GMVEKAWNVF FAGLG++EDGKRDIIMWTSMLS YGRNGCY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCY 303

Query: 311 IRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSC 370
            RVIELYNQMLMEGIKPDRVAFVTVISACGHTG+VNLGV+YFDSMQS FGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSC 363

Query: 371 LVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPT 430
           L DLLCRAGELEKAWKLV+ +KS DYNV LWGALLRACLE GNIKLGNLAARRALELDP 
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 431 NAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           N GI VMLSNLY+GFGLWNEIEHLR  VR+EGL+K V CSWIE TS
Sbjct: 424 NTGILVMLSNLYAGFGLWNEIEHLRESVRKEGLYKDVACSWIEITS 469

[Close]
BLAST of Carg25963 vs. NCBI nr
Match: XP_008457622.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >XP_008457623.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >XP_016902170.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo])

HSP 1 Score: 823.5 bits (2126), Expect = 3.6e-235
Identity = 401/466 (86.05%), Postives = 429/466 (92.06%), Query Frame = 0 

Query: 11  RSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALS 70
           RSLDSFASF  H+SQI+NLK IKK+HA LLRTHFQF SP+LHSKLILSYSQIIPNFDA S
Sbjct: 4   RSLDSFASFFGHSSQIKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 63

Query: 71  LSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSL 130
           L+S FKCIIPR+SLTFNVMISDF RHGFPDF+LM  SFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNSIFKCIIPRTSLTFNVMISDFSRHGFPDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 131 VQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANAL 190
           VQN VYGKQ+HAFVGKSGWLCSVFVGSAIVDMYAKNSLI DAV+VFDE+P+KNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 191 LAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVY 250
           LAGYG+A MW++GLELLRKM  LDLKYDQFTLSASLRAC GLSAIALGKQ+HAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVY 243

Query: 251 DISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCY 310
           DI+SDVHLQSTL+EMYGK+GMVEKAWNVF FAGLG +EDGKRDIIMWTSMLS      CY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSXXXXXXCY 303

Query: 311 IRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSC 370
            RVIELYNQMLMEGIKPDRVAFVTVISACGHTG+VNLGVKYFDSMQS FGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSC 363

Query: 371 LVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPT 430
           L DLLCRAGELEKAWKLV+ +KS DYNV LWGALLRACLE GNIKLGNLAARRALELDP 
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 431 NAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           NAGIF+MLSNLY+GFGLWNEIEHLR FVR+EGL+K VGCSWIE TS
Sbjct: 424 NAGIFIMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 469

[Close]
BLAST of Carg25963 vs. NCBI nr
Match: XP_022146156.1 (pentatricopeptide repeat-containing protein At4g21300-like [Momordica charantia])

HSP 1 Score: 791.6 bits (2043), Expect = 1.5e-225
Identity = 386/476 (81.09%), Postives = 427/476 (89.71%), Query Frame = 0 

Query: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60
           MS  HHFHI++SLD F+SFLRH+++ +NL  IKKLHA L+RTHFQF SP LH+KLILSYS
Sbjct: 1   MSRSHHFHIKQSLDFFSSFLRHSTETKNLTPIKKLHAHLIRTHFQFFSPSLHTKLILSYS 60

Query: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120
           +  PNF A SLSS FK IIPRSSLTFN++I+DF R+G  DF+LMA SFMHSNGVPID+YA
Sbjct: 61  RANPNFGAQSLSSLFKFIIPRSSLTFNIIIADFCRNGSADFALMAFSFMHSNGVPIDSYA 120

Query: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180
           LCS+LSACSLVQN ++GKQMHAFVGKSGWL SVFVGSAIVD+YAKN LI DAV+VFDEIP
Sbjct: 121 LCSTLSACSLVQNVMFGKQMHAFVGKSGWLSSVFVGSAIVDLYAKNGLIGDAVEVFDEIP 180

Query: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240
           +KNTVCANALLAGYG+A MW++GLELLRKMYVLDLKYD FTLSASLR C  LSAIALGKQ
Sbjct: 181 MKNTVCANALLAGYGEAKMWVEGLELLRKMYVLDLKYDHFTLSASLRTCACLSAIALGKQ 240

Query: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300
           VHAYLLR +YDI SDVHLQSTLIEMYGKSGMVEKAWNVF FAGL QKEDGKRDII+WTS+
Sbjct: 241 VHAYLLRMIYDIPSDVHLQSTLIEMYGKSGMVEKAWNVFNFAGLEQKEDGKRDIIVWTSI 300

Query: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360
           LS YGRNGCY RVIELY+QMLMEGIKPDRVAFVTVISACGHTG+V+LG+KYFDSMQS FG
Sbjct: 301 LSVYGRNGCYKRVIELYSQMLMEGIKPDRVAFVTVISACGHTGEVDLGIKYFDSMQSDFG 360

Query: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 420
           L+PGQEHYSCLVDLLCRAGEL+KAWKLV+ MKS   NV LWGALLRACLEHG I+LGNLA
Sbjct: 361 LQPGQEHYSCLVDLLCRAGELDKAWKLVNDMKSQHCNVSLWGALLRACLEHGKIELGNLA 420

Query: 421 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           A++ALELDP N GIFVMLSNLY+ FGLWNEIEHLR FV +EG+ K VGCSWIE TS
Sbjct: 421 AQKALELDPQNTGIFVMLSNLYAIFGLWNEIEHLREFVSKEGMCKDVGCSWIEITS 476

[Close]
BLAST of Carg25963 vs. TAIR10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 248.4 bits (633), Expect = 8.6e-66
Identity = 135/393 (34.35%), Postives = 219/393 (55.73%), Query Frame = 0 

Query: 81  RSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGKQM 140
           R+S+T++ M++ + ++G    ++   S M S G+    Y +   L+ACS +     GKQ+
Sbjct: 285 RNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQL 344

Query: 141 HAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMW 200
           H+F+ K G+   +F  +A+VDMYAK   + DA K FD +  ++     +L++GY   S  
Sbjct: 345 HSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDN 404

Query: 201 IDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQS 260
            + L L R+M    +  +  T+++ L+AC+ L+ + LGKQVH + ++  +    +V + S
Sbjct: 405 EEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIK--HGFGLEVPIGS 464

Query: 261 TLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQM 320
            L  MY K G +E    VF       +    +D++ W +M+S    NG     +EL+ +M
Sbjct: 465 ALSTMYSKCGSLEDGNLVF-------RRTPNKDVVSWNAMISGLSHNGQGDEALELFEEM 524

Query: 321 LMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRAGE 380
           L EG++PD V FV +ISAC H G V  G  YF+ M    GL+P  +HY+C+VDLL RAG+
Sbjct: 525 LAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQ 584

Query: 381 LEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSN 440
           L++A + +    + D+ + LW  LL AC  HG  +LG  A  + + L    +  +V LS 
Sbjct: 585 LKEAKEFIES-ANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSG 644

Query: 441 LYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
           +Y+  G   ++E +   +R  G+ K VGCSWIE
Sbjct: 645 IYTALGRMRDVERVWKHMRANGVSKEVGCSWIE 667

[Close]
BLAST of Carg25963 vs. TAIR10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 245.4 bits (625), Expect = 7.3e-65
Identity = 129/404 (31.93%), Postives = 226/404 (55.94%), Query Frame = 0 

Query: 70  SLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACS 129
           S+   F+ +  +  +++N +I+ + + G  + +L  +  M +  +  D++ L S L   S
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS 253

Query: 130 LVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANA 189
              + + GK++H +V + G    V++GS++VDMYAK++ I D+ +VF  +  ++ +  N+
Sbjct: 254 EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNS 313

Query: 190 LLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTV 249
           L+AGY     + + L L R+M    +K      S+ + AC  L+ + LGKQ+H Y+LR  
Sbjct: 314 LVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 373

Query: 250 YDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGC 309
           +   S++ + S L++MY K G ++ A  +F             D + WT+++  +  +G 
Sbjct: 374 F--GSNIFIASALVDMYSKCGNIKAARKIF-------DRMNVLDEVSWTAIIMGHALHGH 433

Query: 310 YIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYS 369
               + L+ +M  +G+KP++VAFV V++AC H G V+    YF+SM  V+GL    EHY+
Sbjct: 434 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA 493

Query: 370 CLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDP 429
            + DLL RAG+LE+A+  +S M   +    +W  LL +C  H N++L    A +   +D 
Sbjct: 494 AVADLLGRAGKLEEAYNFISKM-CVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 553

Query: 430 TNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
            N G +V++ N+Y+  G W E+  LR  +R++GL K   CSWIE
Sbjct: 554 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIE 587

[Close]
BLAST of Carg25963 vs. TAIR10
Match: AT2G03880.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 242.7 bits (618), Expect = 4.7e-64
Identity = 133/393 (33.84%), Postives = 222/393 (56.49%), Query Frame = 0 

Query: 81  RSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGKQM 140
           R+ +++  MIS + +      +L  L  M  + V  + Y   S L +C+ + +    + +
Sbjct: 125 RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RML 184

Query: 141 HAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMW 200
           H  + K G    VFV SA++D++AK     DA+ VFDE+   + +  N+++ G+   S  
Sbjct: 185 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 244

Query: 201 IDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQS 260
              LEL ++M       +Q TL++ LRACTGL+ + LG Q H ++++  YD   D+ L +
Sbjct: 245 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YD--QDLILNN 304

Query: 261 TLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQM 320
            L++MY K G +E A  VF        +  +RD+I W++M+S   +NG     ++L+ +M
Sbjct: 305 ALVDMYCKCGSLEDALRVF-------NQMKERDVITWSTMISGLAQNGYSQEALKLFERM 364

Query: 321 LMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRAGE 380
              G KP+ +  V V+ AC H G +  G  YF SM+ ++G++P +EHY C++DLL +AG+
Sbjct: 365 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 424

Query: 381 LEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSN 440
           L+ A KL++ M+  + +   W  LL AC    N+ L   AA++ + LDP +AG + +LSN
Sbjct: 425 LDDAVKLLNEME-CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 484

Query: 441 LYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
           +Y+    W+ +E +R  +R  G+ K  GCSWIE
Sbjct: 485 IYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIE 502

[Close]
BLAST of Carg25963 vs. TAIR10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 242.3 bits (617), Expect = 6.2e-64
Identity = 125/390 (32.05%), Postives = 217/390 (55.64%), Query Frame = 0 

Query: 84  LTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGKQMHAF 143
           +++  MIS +  +  PD ++     M  + V  D   + + LSAC+ + +   G ++H  
Sbjct: 364 VSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKL 423

Query: 144 VGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMWIDG 203
             K+  +  V V + +++MY+K   I+ A+ +F  IP KN +   +++AG    +   + 
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA 483

Query: 204 LELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQSTLI 263
           L  LR+M  + L+ +  TL+A+L AC  + A+  GK++HA++LRT   +  D  L + L+
Sbjct: 484 LIFLRQM-KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRT--GVGLDDFLPNALL 543

Query: 264 EMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQMLME 323
           +MY + G +  AW+ F           K+D+  W  +L+ Y   G    V+EL+++M+  
Sbjct: 544 DMYVRCGRMNTAWSQF--------NSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKS 603

Query: 324 GIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRAGELEK 383
            ++PD + F++++  C  +  V  G+ YF  M+  +G+ P  +HY+C+VDLL RAGEL++
Sbjct: 604 RVRPDEITFISLLCGCSKSQMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQE 663

Query: 384 AWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSNLYS 443
           A K +  M  +  +  +WGALL AC  H  I LG L+A+   ELD  + G +++L NLY+
Sbjct: 664 AHKFIQKMPVTP-DPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYA 723

Query: 444 GFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
             G W E+  +R  ++  GL    GCSW+E
Sbjct: 724 DCGKWREVAKVRRMMKENGLTVDAGCSWVE 740

[Close]
BLAST of Carg25963 vs. TAIR10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 239.6 bits (610), Expect = 4.0e-63
Identity = 142/473 (30.02%), Postives = 260/473 (54.97%), Query Frame = 0 

Query: 15  SFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALSLSSF 74
           + +S L   S ++ L+  K+LHA  L+      +  + S L+  Y         LS    
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC---KQVLSGRRV 363

Query: 75  FKCIIPRSSLTFNVMISDFYRHGF-PDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQN 134
           F  +  R    +N MI+ + ++    +  L+ +    S G+  ++  +   + AC  V++
Sbjct: 364 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC--VRS 423

Query: 135 PVYGKQ--MHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALL 194
             + ++  +H FV K G     FV + ++DMY++   I+ A+++F ++  ++ V  N ++
Sbjct: 424 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 483

Query: 195 AGYGDASMWIDGLELLRKMYVLD-----------LKYDQFTLSASLRACTGLSAIALGKQ 254
            GY  +    D L LL KM  L+           LK +  TL   L +C  LSA+A GK+
Sbjct: 484 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 543

Query: 255 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 314
           +HAY ++   ++++DV + S L++MY K G ++ +  VF        +  ++++I W  +
Sbjct: 544 IHAYAIKN--NLATDVAVGSALVDMYAKCGCLQMSRKVF-------DQIPQKNVITWNVI 603

Query: 315 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 374
           + AYG +G     I+L   M+++G+KP+ V F++V +AC H+G V+ G++ F  M+  +G
Sbjct: 604 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 663

Query: 375 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 434
           +EP  +HY+C+VDLL RAG +++A++L++ M         W +LL A   H N+++G +A
Sbjct: 664 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 723

Query: 435 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
           A+  ++L+P  A  +V+L+N+YS  GLW++   +R  ++ +G+ K  GCSWIE
Sbjct: 724 AQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762

[Close]
BLAST of Carg25963 vs. Swiss-Prot
Match: sp|P93005|PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-64
Identity = 135/393 (34.35%), Postives = 219/393 (55.73%), Query Frame = 0 

Query: 81  RSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGKQM 140
           R+S+T++ M++ + ++G    ++   S M S G+    Y +   L+ACS +     GKQ+
Sbjct: 285 RNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQL 344

Query: 141 HAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMW 200
           H+F+ K G+   +F  +A+VDMYAK   + DA K FD +  ++     +L++GY   S  
Sbjct: 345 HSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDN 404

Query: 201 IDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQS 260
            + L L R+M    +  +  T+++ L+AC+ L+ + LGKQVH + ++  +    +V + S
Sbjct: 405 EEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIK--HGFGLEVPIGS 464

Query: 261 TLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQM 320
            L  MY K G +E    VF       +    +D++ W +M+S    NG     +EL+ +M
Sbjct: 465 ALSTMYSKCGSLEDGNLVF-------RRTPNKDVVSWNAMISGLSHNGQGDEALELFEEM 524

Query: 321 LMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRAGE 380
           L EG++PD V FV +ISAC H G V  G  YF+ M    GL+P  +HY+C+VDLL RAG+
Sbjct: 525 LAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQ 584

Query: 381 LEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSN 440
           L++A + +    + D+ + LW  LL AC  HG  +LG  A  + + L    +  +V LS 
Sbjct: 585 LKEAKEFIES-ANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSG 644

Query: 441 LYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
           +Y+  G   ++E +   +R  G+ K VGCSWIE
Sbjct: 645 IYTALGRMRDVERVWKHMRANGVSKEVGCSWIE 667

[Close]
BLAST of Carg25963 vs. Swiss-Prot
Match: sp|Q9LW63|PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-63
Identity = 129/404 (31.93%), Postives = 226/404 (55.94%), Query Frame = 0 

Query: 70  SLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACS 129
           S+   F+ +  +  +++N +I+ + + G  + +L  +  M +  +  D++ L S L   S
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS 253

Query: 130 LVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANA 189
              + + GK++H +V + G    V++GS++VDMYAK++ I D+ +VF  +  ++ +  N+
Sbjct: 254 EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNS 313

Query: 190 LLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTV 249
           L+AGY     + + L L R+M    +K      S+ + AC  L+ + LGKQ+H Y+LR  
Sbjct: 314 LVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 373

Query: 250 YDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGC 309
           +   S++ + S L++MY K G ++ A  +F             D + WT+++  +  +G 
Sbjct: 374 F--GSNIFIASALVDMYSKCGNIKAARKIF-------DRMNVLDEVSWTAIIMGHALHGH 433

Query: 310 YIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYS 369
               + L+ +M  +G+KP++VAFV V++AC H G V+    YF+SM  V+GL    EHY+
Sbjct: 434 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA 493

Query: 370 CLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDP 429
            + DLL RAG+LE+A+  +S M   +    +W  LL +C  H N++L    A +   +D 
Sbjct: 494 AVADLLGRAGKLEEAYNFISKM-CVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 553

Query: 430 TNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
            N G +V++ N+Y+  G W E+  LR  +R++GL K   CSWIE
Sbjct: 554 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIE 587

[Close]
BLAST of Carg25963 vs. Swiss-Prot
Match: sp|Q9SI53|PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.5e-63
Identity = 133/393 (33.84%), Postives = 222/393 (56.49%), Query Frame = 0 

Query: 81  RSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGKQM 140
           R+ +++  MIS + +      +L  L  M  + V  + Y   S L +C+ + +    + +
Sbjct: 125 RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RML 184

Query: 141 HAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMW 200
           H  + K G    VFV SA++D++AK     DA+ VFDE+   + +  N+++ G+   S  
Sbjct: 185 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 244

Query: 201 IDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQS 260
              LEL ++M       +Q TL++ LRACTGL+ + LG Q H ++++  YD   D+ L +
Sbjct: 245 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YD--QDLILNN 304

Query: 261 TLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQM 320
            L++MY K G +E A  VF        +  +RD+I W++M+S   +NG     ++L+ +M
Sbjct: 305 ALVDMYCKCGSLEDALRVF-------NQMKERDVITWSTMISGLAQNGYSQEALKLFERM 364

Query: 321 LMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRAGE 380
              G KP+ +  V V+ AC H G +  G  YF SM+ ++G++P +EHY C++DLL +AG+
Sbjct: 365 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 424

Query: 381 LEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSN 440
           L+ A KL++ M+  + +   W  LL AC    N+ L   AA++ + LDP +AG + +LSN
Sbjct: 425 LDDAVKLLNEME-CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 484

Query: 441 LYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
           +Y+    W+ +E +R  +R  G+ K  GCSWIE
Sbjct: 485 IYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIE 502

[Close]
BLAST of Carg25963 vs. Swiss-Prot
Match: sp|Q9M9E2|PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.1e-62
Identity = 125/390 (32.05%), Postives = 217/390 (55.64%), Query Frame = 0 

Query: 84  LTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGKQMHAF 143
           +++  MIS +  +  PD ++     M  + V  D   + + LSAC+ + +   G ++H  
Sbjct: 364 VSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKL 423

Query: 144 VGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMWIDG 203
             K+  +  V V + +++MY+K   I+ A+ +F  IP KN +   +++AG    +   + 
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA 483

Query: 204 LELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQSTLI 263
           L  LR+M  + L+ +  TL+A+L AC  + A+  GK++HA++LRT   +  D  L + L+
Sbjct: 484 LIFLRQM-KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRT--GVGLDDFLPNALL 543

Query: 264 EMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQMLME 323
           +MY + G +  AW+ F           K+D+  W  +L+ Y   G    V+EL+++M+  
Sbjct: 544 DMYVRCGRMNTAWSQF--------NSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKS 603

Query: 324 GIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRAGELEK 383
            ++PD + F++++  C  +  V  G+ YF  M+  +G+ P  +HY+C+VDLL RAGEL++
Sbjct: 604 RVRPDEITFISLLCGCSKSQMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQE 663

Query: 384 AWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSNLYS 443
           A K +  M  +  +  +WGALL AC  H  I LG L+A+   ELD  + G +++L NLY+
Sbjct: 664 AHKFIQKMPVTP-DPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYA 723

Query: 444 GFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
             G W E+  +R  ++  GL    GCSW+E
Sbjct: 724 DCGKWREVAKVRRMMKENGLTVDAGCSWVE 740

[Close]
BLAST of Carg25963 vs. Swiss-Prot
Match: sp|Q7Y211|PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 239.6 bits (610), Expect = 7.2e-62
Identity = 142/473 (30.02%), Postives = 260/473 (54.97%), Query Frame = 0 

Query: 15  SFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALSLSSF 74
           + +S L   S ++ L+  K+LHA  L+      +  + S L+  Y         LS    
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC---KQVLSGRRV 363

Query: 75  FKCIIPRSSLTFNVMISDFYRHGF-PDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQN 134
           F  +  R    +N MI+ + ++    +  L+ +    S G+  ++  +   + AC  V++
Sbjct: 364 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC--VRS 423

Query: 135 PVYGKQ--MHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALL 194
             + ++  +H FV K G     FV + ++DMY++   I+ A+++F ++  ++ V  N ++
Sbjct: 424 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 483

Query: 195 AGYGDASMWIDGLELLRKMYVLD-----------LKYDQFTLSASLRACTGLSAIALGKQ 254
            GY  +    D L LL KM  L+           LK +  TL   L +C  LSA+A GK+
Sbjct: 484 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 543

Query: 255 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 314
           +HAY ++   ++++DV + S L++MY K G ++ +  VF        +  ++++I W  +
Sbjct: 544 IHAYAIKN--NLATDVAVGSALVDMYAKCGCLQMSRKVF-------DQIPQKNVITWNVI 603

Query: 315 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 374
           + AYG +G     I+L   M+++G+KP+ V F++V +AC H+G V+ G++ F  M+  +G
Sbjct: 604 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 663

Query: 375 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 434
           +EP  +HY+C+VDLL RAG +++A++L++ M         W +LL A   H N+++G +A
Sbjct: 664 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 723

Query: 435 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIE 474
           A+  ++L+P  A  +V+L+N+YS  GLW++   +R  ++ +G+ K  GCSWIE
Sbjct: 724 AQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762

[Close]
BLAST of Carg25963 vs. TrEMBL
Match: tr|A0A1S3C6K8|A0A1S3C6K8_CUCME (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=3656 GN=LOC103497272 PE=4 SV=1)

HSP 1 Score: 823.5 bits (2126), Expect = 2.4e-235
Identity = 401/466 (86.05%), Postives = 429/466 (92.06%), Query Frame = 0 

Query: 11  RSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALS 70
           RSLDSFASF  H+SQI+NLK IKK+HA LLRTHFQF SP+LHSKLILSYSQIIPNFDA S
Sbjct: 4   RSLDSFASFFGHSSQIKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 63

Query: 71  LSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSL 130
           L+S FKCIIPR+SLTFNVMISDF RHGFPDF+LM  SFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNSIFKCIIPRTSLTFNVMISDFSRHGFPDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 131 VQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANAL 190
           VQN VYGKQ+HAFVGKSGWLCSVFVGSAIVDMYAKNSLI DAV+VFDE+P+KNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 191 LAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVY 250
           LAGYG+A MW++GLELLRKM  LDLKYDQFTLSASLRAC GLSAIALGKQ+HAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVY 243

Query: 251 DISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCY 310
           DI+SDVHLQSTL+EMYGK+GMVEKAWNVF FAGLG +EDGKRDIIMWTSMLS      CY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSXXXXXXCY 303

Query: 311 IRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSC 370
            RVIELYNQMLMEGIKPDRVAFVTVISACGHTG+VNLGVKYFDSMQS FGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSC 363

Query: 371 LVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPT 430
           L DLLCRAGELEKAWKLV+ +KS DYNV LWGALLRACLE GNIKLGNLAARRALELDP 
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 431 NAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           NAGIF+MLSNLY+GFGLWNEIEHLR FVR+EGL+K VGCSWIE TS
Sbjct: 424 NAGIFIMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 469

[Close]
BLAST of Carg25963 vs. TrEMBL
Match: tr|A0A0A0LLD6|A0A0A0LLD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258600 PE=4 SV=1)

HSP 1 Score: 823.5 bits (2126), Expect = 2.4e-235
Identity = 400/466 (85.84%), Postives = 429/466 (92.06%), Query Frame = 0 

Query: 11  RSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALS 70
           RSLDSFASF  H+SQ +NLK IKK+HA LLRTHFQF SP+LHSKLILSYSQIIPNFDA S
Sbjct: 4   RSLDSFASFFHHSSQFKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAKS 63

Query: 71  LSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSL 130
           L+  F+CIIPR+SLTFNVMISDF RHGF DF+LM  SFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNGIFQCIIPRTSLTFNVMISDFSRHGFQDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 131 VQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANAL 190
           VQN VYGKQ+HAFVGKSGWLCSVFVGSAIVDMYAKNSLI DAV+VFDE+P+KNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 191 LAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVY 250
           LAGYG+A MW++GLELLRKM  LDLKYDQFTLSASLRACTGLSAIALGKQVHAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVY 243

Query: 251 DISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCY 310
           DI+SDVHLQSTL+EMYGK+GMVEKAWNVF FAGLG++EDGKRDIIMWTSMLS YGRNGCY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCY 303

Query: 311 IRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSC 370
            RVIELYNQMLMEGIKPDRVAFVTVISACGHTG+VNLGV+YFDSMQS FGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSC 363

Query: 371 LVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPT 430
           L DLLCRAGELEKAWKLV+ +KS DYNV LWGALLRACLE GNIKLGNLAARRALELDP 
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 431 NAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           N GI VMLSNLY+GFGLWNEIEHLR  VR+EGL+K V CSWIE TS
Sbjct: 424 NTGILVMLSNLYAGFGLWNEIEHLRESVRKEGLYKDVACSWIEITS 469

[Close]
BLAST of Carg25963 vs. TrEMBL
Match: tr|A0A2I4GBZ8|A0A2I4GBZ8_9ROSI (pentatricopeptide repeat-containing protein At2g13600-like OS=Juglans regia OX=51240 GN=LOC109006548 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 1.7e-156
Identity = 276/467 (59.10%), Postives = 353/467 (75.59%), Query Frame = 0 

Query: 12  SLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALSL 71
           SLDS   F  H SQ +NL  IKKLHA LLRT   FSS +  ++LI SY+    +    +L
Sbjct: 12  SLDSITGFSNHCSQWKNLGPIKKLHAHLLRTGLLFSSLNFLAELIRSYASCHKD----NL 71

Query: 72  SSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLV 131
            +F KC+ P + L FN+++SDF R+G    +L   SFMH NGVP+DTY LCSSL+A S +
Sbjct: 72  QNFLKCMNPGNPLPFNIILSDFNRNGLAFKALKTFSFMHINGVPMDTYTLCSSLAASSSI 131

Query: 132 QNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALL 191
           +N  +G+Q+HA V KSGW  SVFVGSA++D YAK  +I DA  +FDEIP KNTVCANALL
Sbjct: 132 RNVRFGQQVHALVAKSGWSSSVFVGSALIDFYAKLLVIEDAEAMFDEIPAKNTVCANALL 191

Query: 192 AGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYD 251
           +GYG+A MW++GL+L+ KM  L+L YD FTLSA L AC GLSAI +G QVHA+L+RT+YD
Sbjct: 192 SGYGEAKMWLEGLQLVLKMPALNLDYDHFTLSAILHACAGLSAIKVGIQVHAHLIRTLYD 251

Query: 252 ISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYI 311
           +  DV L+S+LIEMYGK G+V KAW VF  AG+ ++ + + D+++WTSML  YGRNG + 
Sbjct: 252 VEKDVFLKSSLIEMYGKCGVVGKAWKVFNLAGV-RRGECQGDVVLWTSMLGVYGRNGYFE 311

Query: 312 RVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCL 371
            V++LY +ML EGIKPD+VAFVTV+SACGHTGQVNLGVK+F+SM   FGL PGQEHYSCL
Sbjct: 312 EVVQLYQEMLKEGIKPDKVAFVTVLSACGHTGQVNLGVKFFESMTCDFGLFPGQEHYSCL 371

Query: 372 VDLLCRAGELEKAWKLVSGMKSSDY---NVPLWGALLRACLEHGNIKLGNLAARRALELD 431
           +DLLCRAG+L++AWKLV+G     +   +V +WGALL AC + GNI+LG LAA++ALELD
Sbjct: 372 IDLLCRAGQLDRAWKLVNGTLYKGHGSCSVSMWGALLTACQDCGNIELGKLAAQKALELD 431

Query: 432 PTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETT 476
           P N G++V+LSNLY+ FG+WNEIE LR  ++  GL K +GCSWIE T
Sbjct: 432 PQNVGVYVILSNLYAKFGMWNEIEKLRLLMKERGLKKEIGCSWIEVT 473

[Close]
BLAST of Carg25963 vs. TrEMBL
Match: tr|K7KHG1|K7KHG1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100798332 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 2.9e-156
Identity = 274/464 (59.05%), Postives = 353/464 (76.08%), Query Frame = 0 

Query: 19  FLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQIIPNFDALSLSSFFKCI 78
           FL  +    N+ AIKKLHAQLLRT   F S +LH++LI +Y+  +PN +  SL++FFKC+
Sbjct: 9   FLHQSRGSGNVSAIKKLHAQLLRTGMLFLSHNLHTQLIATYAACLPNNNLQSLNNFFKCM 68

Query: 79  IPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNPVYGK 138
              + L FN +ISDF R G P  +L + SF+H+NGVP+DTYALCS+L+A S V++   GK
Sbjct: 69  NSTNPLHFNAIISDFCRKGLPFLALASFSFVHANGVPLDTYALCSTLTASSKVKDLNLGK 128

Query: 139 QMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDAS 198
           Q+HA V KSGW  SVFVGSA++D Y+K S + DA  +FDEIP KNTVCANALL+GY +A 
Sbjct: 129 QIHAHVAKSGWSSSVFVGSALIDFYSKLSNVKDAAHMFDEIPEKNTVCANALLSGYAEAG 188

Query: 199 MWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHL 258
           +W+  L+L+RKM VL LK+D FTLSA+LRACTGLSA+ +G+QVH YLLRT  DI SDV L
Sbjct: 189 LWVQELQLVRKMPVLKLKHDHFTLSAALRACTGLSAVEMGRQVHGYLLRTTPDIESDVFL 248

Query: 259 QSTLIEMYGKSGMVEKAWNVFVFAGLG-QKEDGKRDIIMWTSMLSAYGRNGCYIRVIELY 318
           QS L+EMYGK G+V+KAW VF   G+  +KE   RD+++WTSML  YGRNG Y  VI+LY
Sbjct: 249 QSALVEMYGKCGLVKKAWQVFKLVGMEIRKEVRSRDVVLWTSMLGVYGRNGHYKEVIDLY 308

Query: 319 NQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCR 378
           ++ML+EGI+PD +AF+TVIS CGHTGQV+ GVKYF+SM + F L+PG EHYSCLVDLLCR
Sbjct: 309 DEMLVEGIRPDGIAFLTVISTCGHTGQVHAGVKYFESMANDFKLDPGPEHYSCLVDLLCR 368

Query: 379 AGELEKAWKLVS-----GMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNA 438
           AGEL++AW+L++     GM   + +V +WGALL AC++ G++ LG LAA+RALELDP N 
Sbjct: 369 AGELQRAWELLNETLYKGM--GNCSVSMWGALLSACVDRGDLDLGKLAAQRALELDPQNV 428

Query: 439 GIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
           GI +MLSNLY+ FG+W EI HLR  ++  GL K VGCSW++  S
Sbjct: 429 GICIMLSNLYARFGMWEEIGHLRVLIKARGLKKDVGCSWVQVGS 470

[Close]
BLAST of Carg25963 vs. TrEMBL
Match: tr|A0A2P6PQ79|A0A2P6PQ79_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0268571 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.1e-155
Identity = 273/479 (56.99%), Postives = 357/479 (74.53%), Query Frame = 0 

Query: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60
           MS+    +  +S D    ++ H SQ +N  A+KKLHA LL T     SP  H+KLILSY+
Sbjct: 1   MSNYFSLYRTQSSDFITRYIHHISQTKNQSAVKKLHAHLLTTGLLIISPHFHAKLILSYT 60

Query: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120
           + +P  +  +L+ FFKC+ P+S L  NV+++DF R+GF   +L  LSFMHS+GVPIDTYA
Sbjct: 61  KCLPQHNLQTLTHFFKCMKPKSELPINVLMADFCRNGFSFLALKTLSFMHSSGVPIDTYA 120

Query: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180
           LCSSL+A S +++  +G+++HA V KSGW  SVFVGSA+ D+YAK+ +I DA +VFDE+P
Sbjct: 121 LCSSLTAASSIKDVGFGRKIHAHVVKSGWCSSVFVGSALTDLYAKSLVIGDAGQVFDEMP 180

Query: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240
           ++NTVCANALL+GYGDA +W + +EL+RKM  L L+YD  TLSA+LRAC GL+A+ LG+Q
Sbjct: 181 LRNTVCANALLSGYGDAKLWTEAVELIRKMPALSLEYDHLTLSAALRACAGLAAVELGRQ 240

Query: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300
           VH YL+R+VYD+ SD+ L S+LIEMYGK G+V KA  V  F G G   +GKRD++MWTS+
Sbjct: 241 VHGYLMRSVYDVGSDMFLLSSLIEMYGKCGLVAKAQKVLNFDGKG---EGKRDVVMWTSL 300

Query: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360
           L  YGRNG Y  V+EL+  M+MEGI PD VAFVTVISAC  TGQ+ LG++YF+SM+  F 
Sbjct: 301 LGVYGRNGYYKEVLELFKDMMMEGISPDGVAFVTVISACARTGQLRLGIEYFESMELKFS 360

Query: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKS---SDYNVPLWGALLRACLEHGNIKLG 420
           L+PG EHY CLVDLL RAGEL KAWKLV  M +   S   VP+WGALL AC + G+++LG
Sbjct: 361 LKPGPEHYGCLVDLLRRAGELGKAWKLVDEMLNKGHSSCTVPMWGALLNACKDQGDLELG 420

Query: 421 NLAARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 477
            LAA+RALEL+P N GI+V+LSNLY+ FG+W+EI HLR  ++ +GL K VG S IE T+
Sbjct: 421 KLAAQRALELNPHNDGIYVLLSNLYARFGMWHEINHLRELMKEKGLRKDVGYSRIEVTN 476

The following BLAST results are available for this feature:
BLAST of Carg25963 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944055.12.0e-278100.00pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita moschata][more]
XP_023512242.17.9e-26795.80pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp... [more]
XP_004147057.13.6e-23585.84PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like ... [more]
XP_008457622.13.6e-23586.05PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis m... [more]
XP_022146156.11.5e-22581.09pentatricopeptide repeat-containing protein At4g21300-like [Momordica charantia][more]
BLAST of Carg25963 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33680.18.6e-6634.35Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G23330.17.3e-6531.93Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G03880.14.7e-6433.84Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G15510.16.2e-6432.05Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G57430.14.0e-6330.02Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg25963 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P93005|PP181_ARATH1.6e-6434.35Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX... [more]
sp|Q9LW63|PP251_ARATH1.3e-6331.93Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
sp|Q9SI53|PP147_ARATH8.5e-6333.84Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop... [more]
sp|Q9M9E2|PPR45_ARATH1.1e-6232.05Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
sp|Q7Y211|PP285_ARATH7.2e-6230.02Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop... [more]
BLAST of Carg25963 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C6K8|A0A1S3C6K8_CUCME2.4e-23586.05pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=36... [more]
tr|A0A0A0LLD6|A0A0A0LLD6_CUCSA2.4e-23585.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258600 PE=4 SV=1[more]
tr|A0A2I4GBZ8|A0A2I4GBZ8_9ROSI1.7e-15659.10pentatricopeptide repeat-containing protein At2g13600-like OS=Juglans regia OX=5... [more]
tr|K7KHG1|K7KHG1_SOYBN2.9e-15659.05Uncharacterized protein OS=Glycine max OX=3847 GN=100798332 PE=4 SV=1[more]
tr|A0A2P6PQ79|A0A2P6PQ79_ROSCH4.1e-15556.99Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25963-RACarg25963-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 360..392
e-value: 2.9E-6
score: 26.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 295..328
e-value: 7.2E-8
score: 30.1
coord: 368..395
e-value: 1.0E-5
score: 23.4
coord: 331..363
e-value: 7.5E-4
score: 17.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 293..339
e-value: 1.9E-7
score: 31.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 158..180
e-value: 0.25
score: 11.6
coord: 186..210
e-value: 0.37
score: 11.0
coord: 260..279
e-value: 0.051
score: 13.7
coord: 85..114
e-value: 0.23
score: 11.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 328..358
score: 7.213
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 82..116
score: 7.75
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..287
score: 6.16
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 364..398
score: 9.317
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 183..217
score: 7.125
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..327
score: 11.52
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 152..182
score: 6.347
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 431..465
score: 5.261
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 80..255
e-value: 3.6E-19
score: 71.2
coord: 256..471
e-value: 2.7E-36
score: 127.5
NoneNo IPR availablePANTHERPTHR24015:SF839SUBFAMILY NOT NAMEDcoord: 65..475
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 65..475