Carg25857 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTATGTTTTTGTATTTGCTCCTTTTGGTAATACAGAAACTGTGTCCTGCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATAAATTTGTCTACTGAGACTGCTTAATCAACTCTTAATCTAACTCTAATTAAGCTAATATGATTGATTTAATTATAATATTAAGATTAGTCAGATAATTGTTGTTCTGCTTTTGTGTGATTGTTTCTTTGAATTATTGTATGCTAAATCATTTATTACTCTCATTTAATTGTGTTGTTCTATTTATGGTTTTCTCATTCTTATTGATATTCATTTATGAATGGTTTTCACATTTTATTTAATCATCTTATATTATTTTATATTTATATTATTTTATTTTGACGGTTGAGAGCAATTTATTATTTTATTAATATATTTTGGTTGTAATGATGTGTAATGTTGAAGCTTTGAGTTGAGCTGTTTTTATTTGAAAATTTGCCAGAACTGTATATATTTTTTTGAAAATCAATATATAACGTTCTAATAAGATTTTTAACTCATTAATTTAATTTGCAACCAGATATGTCATAATCAACGTCCTAATTTGTTTTAAA ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATAAATTTGTCTACTGAGACTGCTTAATCAACTCTTAATCTAACTCTAATTAAGCTAATATGATTGATTTAATTATAATATTAAGATTAGTCAGATAATTGTTGTTCTGCTTTTGTGTGATTGTTTCTTTGAATTATTGTATGCTAAATCATTTATTACTCTCATTTAATTGTGTTGTTCTATTTATGGTTTTCTCATTCTTATTGATATTCATTTATGAATGGTTTTCACATTTTATTTAATCATCTTATATTATTTTATATTTATATTATTTTATTTTGACGGTTGAGAGCAATTTATTATTTTATTAATATATTTTGGTTGTAATGATGTGTAATGTTGAAGCTTTGAGTTGAGCTGTTTTTATTTGAAAATTTGCCAGAACTGTATATATTTTTTTGAAAATCAATATATAACGTTCTAATAAGATTTTTAACTCATTAATTTAATTTGCAACCAGATATGTCATAATCAACGTCCTAATTTGTTTTAAA ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAG MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
BLAST of Carg25857 vs. NCBI nr
Match: XP_022942204.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg25857 vs. NCBI nr
Match: XP_022942201.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata] >XP_022942202.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg25857 vs. NCBI nr
Match: XP_022942934.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg25857 vs. NCBI nr
Match: XP_022942935.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg25857 vs. NCBI nr
Match: XP_022975564.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Cucurbita maxima]) HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg25857 vs. TAIR10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA) HSP 1 Score: 81.6 bits (200), Expect = 1.8e-16 Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0
BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q7XSZ4|HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2) HSP 1 Score: 84.3 bits (207), Expect = 5.1e-16 Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 0
BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q5ZEJ0|HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 2.5e-15 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0
BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q8VZB2|HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 3.3e-15 Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0
BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q9QY80|HACD1_MOUSE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN=Hacd1 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 5.7e-07 Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q4W1W1|HACD1_CANLF (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris OX=9615 GN=HACD1 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 9.7e-07 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Carg25857 vs. TrEMBL
Match: tr|A0A1S3BT98|A0A1S3BT98_CUCME (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LOC103493277 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 4.4e-20 Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0
BLAST of Carg25857 vs. TrEMBL
Match: tr|A0A0A0L3F8|A0A0A0L3F8_CUCSA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN=Csa_3G114430 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 4.4e-20 Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0
BLAST of Carg25857 vs. TrEMBL
Match: tr|A5C8R1|A5C8R1_VITVI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Vitis vinifera OX=29760 GN=VITISV_031565 PE=3 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 7.7e-17 Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0
BLAST of Carg25857 vs. TrEMBL
Match: tr|D7U6A1|D7U6A1_VITVI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Vitis vinifera OX=29760 GN=VIT_00s0313g00040 PE=3 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 7.7e-17 Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0
BLAST of Carg25857 vs. TrEMBL
Match: tr|A0A1U8GV90|A0A1U8GV90_CAPAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Capsicum annuum OX=4072 GN=LOC107870144 PE=3 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16 Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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