Carg25857 (gene) Silver-seed gourd

NameCarg25857
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionVery-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
LocationCucurbita_argyrosperma_scaffold_337 : 10989 .. 11901 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTATGTTTTTGTATTTGCTCCTTTTGGTAATACAGAAACTGTGTCCTGCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATAAATTTGTCTACTGAGACTGCTTAATCAACTCTTAATCTAACTCTAATTAAGCTAATATGATTGATTTAATTATAATATTAAGATTAGTCAGATAATTGTTGTTCTGCTTTTGTGTGATTGTTTCTTTGAATTATTGTATGCTAAATCATTTATTACTCTCATTTAATTGTGTTGTTCTATTTATGGTTTTCTCATTCTTATTGATATTCATTTATGAATGGTTTTCACATTTTATTTAATCATCTTATATTATTTTATATTTATATTATTTTATTTTGACGGTTGAGAGCAATTTATTATTTTATTAATATATTTTGGTTGTAATGATGTGTAATGTTGAAGCTTTGAGTTGAGCTGTTTTTATTTGAAAATTTGCCAGAACTGTATATATTTTTTTGAAAATCAATATATAACGTTCTAATAAGATTTTTAACTCATTAATTTAATTTGCAACCAGATATGTCATAATCAACGTCCTAATTTGTTTTAAA

mRNA sequence

ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATAAATTTGTCTACTGAGACTGCTTAATCAACTCTTAATCTAACTCTAATTAAGCTAATATGATTGATTTAATTATAATATTAAGATTAGTCAGATAATTGTTGTTCTGCTTTTGTGTGATTGTTTCTTTGAATTATTGTATGCTAAATCATTTATTACTCTCATTTAATTGTGTTGTTCTATTTATGGTTTTCTCATTCTTATTGATATTCATTTATGAATGGTTTTCACATTTTATTTAATCATCTTATATTATTTTATATTTATATTATTTTATTTTGACGGTTGAGAGCAATTTATTATTTTATTAATATATTTTGGTTGTAATGATGTGTAATGTTGAAGCTTTGAGTTGAGCTGTTTTTATTTGAAAATTTGCCAGAACTGTATATATTTTTTTGAAAATCAATATATAACGTTCTAATAAGATTTTTAACTCATTAATTTAATTTGCAACCAGATATGTCATAATCAACGTCCTAATTTGTTTTAAA

Coding sequence (CDS)

ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAG

Protein sequence

MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
BLAST of Carg25857 vs. NCBI nr
Match: XP_022942204.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 160 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

BLAST of Carg25857 vs. NCBI nr
Match: XP_022942201.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata] >XP_022942202.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 179 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 238

Query: 62  KE 64
           KE
Sbjct: 239 KE 240

BLAST of Carg25857 vs. NCBI nr
Match: XP_022942934.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 179 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 238

Query: 62  KE 64
           KE
Sbjct: 239 KE 240

BLAST of Carg25857 vs. NCBI nr
Match: XP_022942935.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 160 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

BLAST of Carg25857 vs. NCBI nr
Match: XP_022975564.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 160 LALPFMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

BLAST of Carg25857 vs. TAIR10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-16
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 10  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 64
           S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 177 SEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 230

BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q7XSZ4|HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           I +   + S KY  RMPNKWNFSFD+ Y ++L LAIYVPGSPHM+ YML QR KAL+K+K
Sbjct: 160 IALPYMKASEKYCLRMPNKWNFSFDFFYASILSLAIYVPGSPHMFTYMLAQRKKALAKAK 219

BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q5ZEJ0|HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-15
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           I +   + + KY  RMPNKWNFSFD+ Y ++L LA+YVPGSPHM+ YML QR KAL+K+K
Sbjct: 160 IALPYMKATEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSPHMFTYMLAQRKKALAKAK 219

BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q8VZB2|HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-15
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 10  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 64
           S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 168 SEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q9QY80|HACD1_MOUSE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN=Hacd1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-07
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 8   QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL 58
           ++SG +S R+PNK+N SFDY Y  ++ +A Y+P  P +Y +ML QR K L
Sbjct: 222 KKSGMFSVRLPNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 271

BLAST of Carg25857 vs. Swiss-Prot
Match: sp|Q4W1W1|HACD1_CANLF (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris OX=9615 GN=HACD1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.7e-07
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 8   QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL 58
           +++G +S R+PNK+N SFDY Y  ++ +A Y+P  P +Y +ML QR K L
Sbjct: 190 KKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 239

BLAST of Carg25857 vs. TrEMBL
Match: tr|A0A1S3BT98|A0A1S3BT98_CUCME (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LOC103493277 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-20
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYS+RMPNKWNFSFDY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSK
Sbjct: 160 LALPYMKESGKYSYRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

BLAST of Carg25857 vs. TrEMBL
Match: tr|A0A0A0L3F8|A0A0A0L3F8_CUCSA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN=Csa_3G114430 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-20
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYS+RMPNKWNFSFDY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSK
Sbjct: 160 LALPYMKESGKYSYRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

BLAST of Carg25857 vs. TrEMBL
Match: tr|A5C8R1|A5C8R1_VITVI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Vitis vinifera OX=29760 GN=VITISV_031565 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.7e-17
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           I +   +ES KY  RMPNKWNFSFDY Y A+L++A YVPGSPHMY+YML QR +ALSKSK
Sbjct: 159 IALPYIKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPGSPHMYQYMLGQRKRALSKSK 218

Query: 62  KE 64
           +E
Sbjct: 219 RE 220

BLAST of Carg25857 vs. TrEMBL
Match: tr|D7U6A1|D7U6A1_VITVI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Vitis vinifera OX=29760 GN=VIT_00s0313g00040 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.7e-17
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           I +   +ES KY  RMPNKWNFSFDY Y A+L++A YVPGSPHMY+YML QR +ALSKSK
Sbjct: 159 IALPYIKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPGSPHMYQYMLGQRKRALSKSK 218

Query: 62  KE 64
           +E
Sbjct: 219 RE 220

BLAST of Carg25857 vs. TrEMBL
Match: tr|A0A1U8GV90|A0A1U8GV90_CAPAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Capsicum annuum OX=4072 GN=LOC107870144 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 9   ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 64
           ESGKYS RMPNKWNFSFDY Y  ++ L IYVPGSPHMY YML QR KALSKSKKE
Sbjct: 167 ESGKYSLRMPNKWNFSFDYYYAGLVALGIYVPGSPHMYGYMLGQRKKALSKSKKE 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022942204.13.7e-2388.71very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2... [more]
XP_022942201.13.7e-2388.71very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1... [more]
XP_022942934.13.7e-2388.71very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1... [more]
XP_022942935.13.7e-2388.71very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2... [more]
XP_022975564.13.7e-2388.71very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Cuc... [more]
Match NameE-valueIdentityDescription
AT5G10480.31.8e-1672.22Protein-tyrosine phosphatase-like, PTPLA[more]
Match NameE-valueIdentityDescription
sp|Q7XSZ4|HACDA_ORYSJ5.1e-1663.33Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa... [more]
sp|Q5ZEJ0|HACDB_ORYSJ2.5e-1560.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa... [more]
sp|Q8VZB2|HACD_ARATH3.3e-1572.22Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t... [more]
sp|Q9QY80|HACD1_MOUSE5.7e-0748.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN... [more]
sp|Q4W1W1|HACD1_CANLF9.7e-0746.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris O... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BT98|A0A1S3BT98_CUCME4.4e-2077.42Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A0A0L3F8|A0A0A0L3F8_CUCSA4.4e-2077.42Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN... [more]
tr|A5C8R1|A5C8R1_VITVI7.7e-1767.74Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Vitis vinifera OX=29760 GN... [more]
tr|D7U6A1|D7U6A1_VITVI7.7e-1767.74Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Vitis vinifera OX=29760 GN... [more]
tr|A0A1U8GV90|A0A1U8GV90_CAPAN1.0e-1680.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Capsicum annuum OX=4072 GN... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25857-RACarg25857-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007482Protein-tyrosine phosphatase-like, PTPLAPFAMPF04387PTPLAcoord: 5..59
e-value: 1.9E-13
score: 50.4
IPR007482Protein-tyrosine phosphatase-like, PTPLAPANTHERPTHR11035PTPLA DOMAIN PROTEINcoord: 4..62