Carg25849 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25849
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dof zinc finger protein like
Location	Cucurbita_argyrosperma_scaffold_356 : 162164 .. 162862 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTCGGAATCAGCCAATCCTAACAGAACCAACCGCCCCCAACACACCATGCCCTTCCCTCCCCCGCCCCAATCCGACCCACGCCCCTGCCCACGCTGCGACTCACTCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGTGACGTTCCTGTCGGCGGCGGCTCACGCAAAAACTCCAAACGCTCACGTTATCACAACGCCCCCTCCTCTGCTTCCTCCTCTTCCTCCTCTGTTTCACTTCTTCCTCCCGCCGTCGCCGCCGTCACTAACGACATTAACGTCAATCTCAACGACACCATGTCCGGTCCTGCCACTTTCACTTCTCTCTTGAGCTCCCAAGGATCCGGGTTTTTGGCTCTTGGTGGATACGGGTCTGGATCCGGGTCGGCTCATGCCCCTGCAGCTTTTGACGAAATGGGGTTCGGCTTAGGCAGGGGATTATGGGATACCGCTTGTACTTACACTGAAGTTGGGGATCTCGTCGGAGCTCCGGAGACGTCGTCGTCTGGATACAACACGTGGCAGATGAATGACACGAATGGCGACGGCGCTGGCGGCGGAGTTGTCGACGGCGATTTGCTGAATTGGCCGGACCTTGCCATTTCCATGCAAGGCAAGAGCTTGAAGTAA

mRNA sequence

ATGCCGTCGGAATCAGCCAATCCTAACAGAACCAACCGCCCCCAACACACCATGCCCTTCCCTCCCCCGCCCCAATCCGACCCACGCCCCTGCCCACGCTGCGACTCACTCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGTGACGTTCCTGTCGGCGGCGGCTCACGCAAAAACTCCAAACGCTCACGTTATCACAACGCCCCCTCCTCTGCTTCCTCCTCTTCCTCCTCTGTTTCACTTCTTCCTCCCGCCGTCGCCGCCGTCACTAACGACATTAACGTCAATCTCAACGACACCATGTCCGGTCCTGCCACTTTCACTTCTCTCTTGAGCTCCCAAGGATCCGGGTTTTTGGCTCTTGGTGGATACGGGTCTGGATCCGGGTCGGCTCATGCCCCTGCAGCTTTTGACGAAATGGGGTTCGGCTTAGGCAGGGGATTATGGGATACCGCTTGTACTTACACTGAAGTTGGGGATCTCGTCGGAGCTCCGGAGACGTCGTCGTCTGGATACAACACGTGGCAGATGAATGACACGAATGGCGACGGCGCTGGCGGCGGAGTTGTCGACGGCGATTTGCTGAATTGGCCGGACCTTGCCATTTCCATGCAAGGCAAGAGCTTGAAGTAA

Coding sequence (CDS)

ATGCCGTCGGAATCAGCCAATCCTAACAGAACCAACCGCCCCCAACACACCATGCCCTTCCCTCCCCCGCCCCAATCCGACCCACGCCCCTGCCCACGCTGCGACTCACTCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGTGACGTTCCTGTCGGCGGCGGCTCACGCAAAAACTCCAAACGCTCACGTTATCACAACGCCCCCTCCTCTGCTTCCTCCTCTTCCTCCTCTGTTTCACTTCTTCCTCCCGCCGTCGCCGCCGTCACTAACGACATTAACGTCAATCTCAACGACACCATGTCCGGTCCTGCCACTTTCACTTCTCTCTTGAGCTCCCAAGGATCCGGGTTTTTGGCTCTTGGTGGATACGGGTCTGGATCCGGGTCGGCTCATGCCCCTGCAGCTTTTGACGAAATGGGGTTCGGCTTAGGCAGGGGATTATGGGATACCGCTTGTACTTACACTGAAGTTGGGGATCTCGTCGGAGCTCCGGAGACGTCGTCGTCTGGATACAACACGTGGCAGATGAATGACACGAATGGCGACGGCGCTGGCGGCGGAGTTGTCGACGGCGATTTGCTGAATTGGCCGGACCTTGCCATTTCCATGCAAGGCAAGAGCTTGAAGTAA

Protein sequence

MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDVPVGGGSRKNSKRSRYHNAPSSASSSSSSVSLLPPAVAAVTNDINVNLNDTMSGPATFTSLLSSQGSGFLALGGYGSGSGSAHAPAAFDEMGFGLGRGLWDTACTYTEVGDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK

Homology

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BLAST of Carg25849 vs. NCBI nr
Match: XP_022951825.1 (dof zinc finger protein DOF1.6-like [Cucurbita moschata])

HSP 1 Score: 387.9 bits (995), Expect = 2.4e-104
Identity = 231/232 (99.57%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR
Sbjct: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLN 120
           RYWTHGGTLRDVPVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLN
Sbjct: 61  RYWTHGGTLRDVPVG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLN 120

Query: 121 DTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTEV 180
           DTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTEV
Sbjct: 121 DTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTEV 180

Query: 181 GDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 233
           GDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK
Sbjct: 181 GDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 231

[Close]

BLAST of Carg25849 vs. NCBI nr
Match: XP_023537460.1 (dof zinc finger protein DOF1.6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.1 bits (993), Expect = 4.2e-104
Identity = 229/232 (98.71%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR
Sbjct: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLN 120
           RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  NDINVNLN
Sbjct: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDINVNLN 120

Query: 121 DTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTEV 180
           DTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTEV
Sbjct: 121 DTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTEV 180

Query: 181 GDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 233
           GD+VGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK
Sbjct: 181 GDIVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 232

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BLAST of Carg25849 vs. NCBI nr
Match: XP_023002014.1 (dof zinc finger protein DOF1.6-like [Cucurbita maxima])

HSP 1 Score: 386.0 bits (990), Expect = 9.3e-104
Identity = 224/232 (96.55%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR
Sbjct: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLN 120
           RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  NDINVNLN
Sbjct: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDINVNLN 120

Query: 121 DTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTEV 180
           DTMSGPATFTSLLSSQG GFLALGGYGS     HAPAAFDEMGFGLGRGLWDTACTYTEV
Sbjct: 121 DTMSGPATFTSLLSSQGPGFLALGGYGSGSGSAHAPAAFDEMGFGLGRGLWDTACTYTEV 180

Query: 181 GDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 233
           GDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK
Sbjct: 181 GDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 232

[Close]

BLAST of Carg25849 vs. NCBI nr
Match: XP_004152723.1 (PREDICTED: dof zinc finger protein DOF1.6-like [Cucumis sativus] >KGN62555.1 hypothetical protein Csa_2G360720 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 181/250 (72.40%), Postives = 191/250 (76.40%), Query Frame = 0


Query: 1   MPSESANPNRTN-RPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60
           MPSES+N N +  +PQHTM FPPPPQSDP PCPRCDSLNTKFCYYNNYNLSQPRHFCKSC
Sbjct: 1   MPSESSNRNNSRPQPQHTMGFPPPPQSDPLPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60

Query: 61  RRYWTHGGTLRDVPVG-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRYWTHGGTLRDVPVG                      XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RRYWTHGGTLRDVPVGGGSRKNSKRSRYHNINNTPSSVXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXVTNDINVNLNDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGR 180
           X   N +N ++NDT+  P TFTSLLSSQ SGFLALGGY S     HAPAAFD+MGF LGR
Sbjct: 121 XPTANALNSDINDTIPAPGTFTSLLSSQASGFLALGGYASGSGSGHAPAAFDDMGFALGR 180

Query: 181 GLWDTACTYTEVGDLV------GAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDL 233
           GLW TAC Y EVGDLV      GAPETSSSGYNTWQMN  +G G  GGVVDGDLL WPDL
Sbjct: 181 GLWGTACPYPEVGDLVGSYATGGAPETSSSGYNTWQMNANDG-GGNGGVVDGDLLGWPDL 240

[Close]

BLAST of Carg25849 vs. NCBI nr
Match: XP_008444659.1 (PREDICTED: dof zinc finger protein DOF1.6-like [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 182/250 (72.80%), Postives = 192/250 (76.80%), Query Frame = 0


Query: 1   MPSESANPNRTN-RPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60
           MPSES+N N +  +PQHTM FPPPPQSDP PCPRCDSLNTKFCYYNNYNLSQPRHFCKSC
Sbjct: 1   MPSESSNRNNSRPQPQHTMGFPPPPQSDPLPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60

Query: 61  RRYWTHGGTLRDVPVG-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRYWTHGGTLRDVPVG                      XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RRYWTHGGTLRDVPVGGGSRKNSKRSRYHNINNTPSSVXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXVTNDINVNLNDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGR 180
           X   N +N ++NDT+  P TFTSLLSSQ SGFLALGGY S     HAPAAFD+MGF LGR
Sbjct: 121 XPTANALNNDINDTIPPPGTFTSLLSSQASGFLALGGYTSGSGSGHAPAAFDDMGFALGR 180

Query: 181 GLWDTACTYTEVGDLV------GAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDL 233
           GLW TAC Y EVGDLV      GAPETSSSGYNTWQMN T+G G  GGVVDGDLL WPDL
Sbjct: 181 GLWGTACPYPEVGDLVGSYAAGGAPETSSSGYNTWQMNATDG-GGNGGVVDGDLLGWPDL 240

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BLAST of Carg25849 vs. TAIR10
Match: AT3G50410.1 (OBF binding protein 1)

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-30
Identity = 92/266 (34.59%), Postives = 113/266 (42.48%), Query Frame = 0


Query: 3   SESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRY 62
           S+S  P R     + +  P   Q +  PCPRCDS NTKFCYYNNYN SQPRHFCK+CRRY
Sbjct: 4   SDSGEPRRIAMKPNGVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRY 63

Query: 63  WTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLNDT 122
           WTHGGTLRDVPVG                                   V+N   V L  T
Sbjct: 64  WTHGGTLRDVPVG-----------GGTRKSAKRSRTCSNSSSSSVSGVVSNSNGVPLQTT 123

Query: 123 --------MSGPATFTSLLSSQGSGFLALGGYGSXXXXXH-------------------- 182
                   +S   T T   S      L+L G  +     H                    
Sbjct: 124 PVLFPQSSISNGVTHTVTESDGKGSALSLCGSFTSTLLNHXXXXXXXXXXXXXXXXXXXX 183

Query: 183 --APAAFDEMGFGLGRGLWDTACTYTEVGDLVGAPETSSSGYN------TWQMNDTNGDG 233
                 FD++ FGLGR +W     ++ VG        S+ G++      TWQ      + 
Sbjct: 184 XXXXXXFDDVSFGLGRAMW----PFSTVGTATTTNVGSNGGHHAVPMPATWQFEGLESN- 243

[Close]

BLAST of Carg25849 vs. TAIR10
Match: AT1G47655.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-25
Identity = 119/233 (51.07%), Postives = 140/233 (60.09%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPSE      T     T  +PPP  ++P PCPRC+S  TKFCYYNNYNL+QPR++CKSCR
Sbjct: 1   MPSEPNQTRPTRVQPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCR 60

Query: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDIN-VNL 120
           RYWT GGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +   +
Sbjct: 61  RYWTQGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQTKV 120

Query: 121 NDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTE 180
            + +SG  +F SLL               XXXXX      +EM  G    L D++     
Sbjct: 121 TNLISGHGSFASLLG-------XXXXXXXXXXXXXXXXXXEEMSIGY---LGDSS----- 180

Query: 181 VGDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 233
           VG++   P     G +TWQ+ +  G         GD L WP L ISMQ   +K
Sbjct: 181 VGEI---PVVDGCGGDTWQIGEIEGKSG------GDSLIWPGLEISMQTNDVK 209

[Close]

BLAST of Carg25849 vs. TAIR10
Match: AT5G66940.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-22
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MPSESANPNRTNRPQHTMPFP---PPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCK 60
          MPSE +   R  +  H        P  Q +   CPRC+S NTKFCYYNNYN SQPRHFCK
Sbjct: 1  MPSEFSESRRVPKIPHGQGGSVAIPTDQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCK 60

Query: 61 SCRRYWTHGGTLRDVPVG 76
          SCRRYWTHGGTLRD+PVG
Sbjct: 61 SCRRYWTHGGTLRDIPVG 78

[Close]

BLAST of Carg25849 vs. TAIR10
Match: AT1G07640.3 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-22
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 23  PPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDVPVG 76
           PP + P  CPRCDS NTKFCYYNNYNL+QPRHFCK CRRYWT GG LR+VPVG
Sbjct: 79  PPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVG 131

[Close]

BLAST of Carg25849 vs. TAIR10
Match: AT3G21270.1 (DOF zinc finger protein 2)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 31 CPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDVPVG 76
          CPRCDS NTKFCYYNNYNLSQPRHFCKSCRRYWT GG LR+VPVG
Sbjct: 31 CPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVG 75

[Close]

BLAST of Carg25849 vs. Swiss-Prot
Match: sp|Q39088|DOF34_ARATH (Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 92/266 (34.59%), Postives = 113/266 (42.48%), Query Frame = 0


Query: 3   SESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRY 62
           S+S  P R     + +  P   Q +  PCPRCDS NTKFCYYNNYN SQPRHFCK+CRRY
Sbjct: 4   SDSGEPRRIAMKPNGVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRY 63

Query: 63  WTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLNDT 122
           WTHGGTLRDVPVG                                   V+N   V L  T
Sbjct: 64  WTHGGTLRDVPVG-----------GGTRKSAKRSRTCSNSSSSSVSGVVSNSNGVPLQTT 123

Query: 123 --------MSGPATFTSLLSSQGSGFLALGGYGSXXXXXH-------------------- 182
                   +S   T T   S      L+L G  +     H                    
Sbjct: 124 PVLFPQSSISNGVTHTVTESDGKGSALSLCGSFTSTLLNHXXXXXXXXXXXXXXXXXXXX 183

Query: 183 --APAAFDEMGFGLGRGLWDTACTYTEVGDLVGAPETSSSGYN------TWQMNDTNGDG 233
                 FD++ FGLGR +W     ++ VG        S+ G++      TWQ      + 
Sbjct: 184 XXXXXXFDDVSFGLGRAMW----PFSTVGTATTTNVGSNGGHHAVPMPATWQFEGLESN- 243

[Close]

BLAST of Carg25849 vs. Swiss-Prot
Match: sp|Q9SX97|DOF16_ARATH (Dof zinc finger protein DOF1.6 OS=Arabidopsis thaliana OX=3702 GN=DOF1.6 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 119/233 (51.07%), Postives = 140/233 (60.09%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPSE      T     T  +PPP  ++P PCPRC+S  TKFCYYNNYNL+QPR++CKSCR
Sbjct: 1   MPSEPNQTRPTRVQPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCR 60

Query: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDIN-VNL 120
           RYWT GGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +   +
Sbjct: 61  RYWTQGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQTKV 120

Query: 121 NDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTACTYTE 180
            + +SG  +F SLL               XXXXX      +EM  G    L D++     
Sbjct: 121 TNLISGHGSFASLLG-------XXXXXXXXXXXXXXXXXXEEMSIGY---LGDSS----- 180

Query: 181 VGDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 233
           VG++   P     G +TWQ+ +  G         GD L WP L ISMQ   +K
Sbjct: 181 VGEI---PVVDGCGGDTWQIGEIEGKSG------GDSLIWPGLEISMQTNDVK 209

[Close]

BLAST of Carg25849 vs. Swiss-Prot
Match: sp|Q9FGD6|DOF58_ARATH (Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana OX=3702 GN=DOF5.8 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MPSESANPNRTNRPQHTMPFP---PPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCK 60
          MPSE +   R  +  H        P  Q +   CPRC+S NTKFCYYNNYN SQPRHFCK
Sbjct: 1  MPSEFSESRRVPKIPHGQGGSVAIPTDQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCK 60

Query: 61 SCRRYWTHGGTLRDVPVG 76
          SCRRYWTHGGTLRD+PVG
Sbjct: 61 SCRRYWTHGGTLRDIPVG 78

[Close]

BLAST of Carg25849 vs. Swiss-Prot
Match: sp|Q8L9V6|DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-21
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 23  PPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDVPVG 76
           PP + P  CPRCDS NTKFCYYNNYNL+QPRHFCK CRRYWT GG LR+VPVG
Sbjct: 71  PPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVG 123

[Close]

BLAST of Carg25849 vs. Swiss-Prot
Match: sp|Q94AR6|DOF31_ARATH (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-20
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 31 CPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDVPVG 76
          CPRCDS NTKFCYYNNYNLSQPRHFCKSCRRYWT GG LR+VPVG
Sbjct: 31 CPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVG 75

[Close]

BLAST of Carg25849 vs. TrEMBL
Match: tr|A0A1S3BAC9|A0A1S3BAC9_CUCME (dof zinc finger protein DOF1.6-like OS=Cucumis melo OX=3656 GN=LOC103487930 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 182/250 (72.80%), Postives = 192/250 (76.80%), Query Frame = 0


Query: 1   MPSESANPNRTN-RPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60
           MPSES+N N +  +PQHTM FPPPPQSDP PCPRCDSLNTKFCYYNNYNLSQPRHFCKSC
Sbjct: 1   MPSESSNRNNSRPQPQHTMGFPPPPQSDPLPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60

Query: 61  RRYWTHGGTLRDVPVG-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRYWTHGGTLRDVPVG                      XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RRYWTHGGTLRDVPVGGGSRKNSKRSRYHNINNTPSSVXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXVTNDINVNLNDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGR 180
           X   N +N ++NDT+  P TFTSLLSSQ SGFLALGGY S     HAPAAFD+MGF LGR
Sbjct: 121 XPTANALNNDINDTIPPPGTFTSLLSSQASGFLALGGYTSGSGSGHAPAAFDDMGFALGR 180

Query: 181 GLWDTACTYTEVGDLV------GAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDL 233
           GLW TAC Y EVGDLV      GAPETSSSGYNTWQMN T+G G  GGVVDGDLL WPDL
Sbjct: 181 GLWGTACPYPEVGDLVGSYAAGGAPETSSSGYNTWQMNATDG-GGNGGVVDGDLLGWPDL 240

[Close]

BLAST of Carg25849 vs. TrEMBL
Match: tr|A0A0A0LKY9|A0A0A0LKY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360720 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 181/250 (72.40%), Postives = 191/250 (76.40%), Query Frame = 0


Query: 1   MPSESANPNRTN-RPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60
           MPSES+N N +  +PQHTM FPPPPQSDP PCPRCDSLNTKFCYYNNYNLSQPRHFCKSC
Sbjct: 1   MPSESSNRNNSRPQPQHTMGFPPPPQSDPLPCPRCDSLNTKFCYYNNYNLSQPRHFCKSC 60

Query: 61  RRYWTHGGTLRDVPVG-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRYWTHGGTLRDVPVG                      XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RRYWTHGGTLRDVPVGGGSRKNSKRSRYHNINNTPSSVXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXVTNDINVNLNDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGR 180
           X   N +N ++NDT+  P TFTSLLSSQ SGFLALGGY S     HAPAAFD+MGF LGR
Sbjct: 121 XPTANALNSDINDTIPAPGTFTSLLSSQASGFLALGGYASGSGSGHAPAAFDDMGFALGR 180

Query: 181 GLWDTACTYTEVGDLV------GAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDL 233
           GLW TAC Y EVGDLV      GAPETSSSGYNTWQMN  +G G  GGVVDGDLL WPDL
Sbjct: 181 GLWGTACPYPEVGDLVGSYATGGAPETSSSGYNTWQMNANDG-GGNGGVVDGDLLGWPDL 240

[Close]

BLAST of Carg25849 vs. TrEMBL
Match: tr|A0A1U8AE19|A0A1U8AE19_NELNU (dof zinc finger protein DOF3.4-like OS=Nelumbo nucifera OX=4432 GN=LOC104601962 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.7e-42
Identity = 107/238 (44.96%), Postives = 131/238 (55.04%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPSES +  R  +PQH     PPP+ +  PCPRCDS NTKFCYYNNYNLSQPRHFCKSCR
Sbjct: 1   MPSESGD-RRQAKPQHM--GAPPPEHEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 61  RYWTHGGTLRDVPVG------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTND 120
           RYWT GGTLR++PVG                                           +D
Sbjct: 61  RYWTQGGTLRNIPVGGGSRKNAKRSRTSSSSVAPHDPIPANPVSVSLPADPELSLPTRSD 120

Query: 121 INVNLNDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTA 180
           +++++N  MSG  +FTSLL++QG GFLALGG+G         + FD++GFGLGRG W   
Sbjct: 121 LSLDVN--MSG--SFTSLLNTQGPGFLALGGFG-----LGLSSGFDDLGFGLGRGTW--- 180

Query: 181 CTYTEVGDLVGAPETSSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQGKSLK 233
              TE  D+      +  G N+W +         GG V+GD   WPDLAISM GK LK
Sbjct: 181 -PLTEAADVGCGASATGGGLNSWSLGTNE-----GGFVEGDCFAWPDLAISMPGKGLK 217

[Close]

BLAST of Carg25849 vs. TrEMBL
Match: tr|F6H1E9|F6H1E9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g11310 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.4e-38
Identity = 123/245 (50.20%), Postives = 139/245 (56.73%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPSES    R  RPQ       PPQS+  PCPRCDS NTKFCYYNNYNLSQPRHFCKSCR
Sbjct: 1   MPSESGE-RRVARPQQVGGH--PPQSEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 61  RYWTHGGTLRDVPVG-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDI 120
           RYWT GGTLR++PVG         XXXXXXXXXXX                         
Sbjct: 61  RYWTQGGTLRNIPVGGGTRKNSKRXXXXXXXXXXXLETTPANPISVSPVLKAETETPQRN 120

Query: 121 NVNLNDTMSGPATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFGLGRGLWDTAC 180
            ++LN  +SG   FTSLL+SQG GFLAL G+            FDEMGFG  +G+W    
Sbjct: 121 GLSLNGDVSG--GFTSLLNSQGPGFLALNGFSLGLG-----PGFDEMGFGPAKGVW---- 180

Query: 181 TYTEVGDLV-GAPET-------SSSGYNTWQMNDTNGDGAGGGVVDGDLLNWPDLAISMQ 233
           +Y +VGD+V G   T       SSS  NTWQ++     G   G VDGD   WPDLAIS  
Sbjct: 181 SYPDVGDVVLGGDGTGXXXXXXSSSICNTWQLS-----GGEVGFVDGDCFAWPDLAISTP 226

[Close]

BLAST of Carg25849 vs. TrEMBL
Match: tr|A0A2N9J9V6|A0A2N9J9V6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61999 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.0e-37
Identity = 107/254 (42.13%), Postives = 127/254 (50.00%), Query Frame = 0


Query: 1   MPSESANPNRTNRPQHTMPFPPPPQSDPRPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCR 60
           MPS+S+   R  +PQ+  P  PPP+ +  PCPRCDS NTKFCYYNNYN SQPRHFCKSCR
Sbjct: 1   MPSDSSEQRRQTKPQN--PGAPPPEQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCR 60

Query: 61  RYWTHGGTLRDVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNDINVNLN 120
           RYWTHGGTLRD+PVG                                       + ++ N
Sbjct: 61  RYWTHGGTLRDIPVGGGSRKNAKRSRTATNPNHNSNNILSSATSHEPLQTTPVLLPLSAN 120

Query: 121 DTMSGP---------------ATFTSLLSSQGSGFLALGGYGSXXXXXHAPAAFDEMGFG 180
              S                  +FTSLL++QG GFLALGG+G           FDEMGFG
Sbjct: 121 HHGSSVQFGLGGDGKGNVNVCGSFTSLLNTQGPGFLALGGFG-----LGLQPGFDEMGFG 180

Query: 181 LGRGLWDTACTYTEVGD-----LVG-APETSSSGY-NTWQMNDTNGDGAGGGVVDGDLLN 233
           LGR +W     +  VGD     +VG     S++G  NTWQ      +    G V GD   
Sbjct: 181 LGRAVW----PFPGVGDGGAAGVVGNGGNASANGMGNTWQF-----ESGESGFVGGDCFP 238

The following BLAST results are available for this feature:

BLAST of Carg25849 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951825.1	2.4e-104	99.57	dof zinc finger protein DOF1.6-like [Cucurbita moschata]	[more]
XP_023537460.1	4.2e-104	98.71	dof zinc finger protein DOF1.6-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002014.1	9.3e-104	96.55	dof zinc finger protein DOF1.6-like [Cucurbita maxima]	[more]
XP_004152723.1	2.0e-77	72.40	PREDICTED: dof zinc finger protein DOF1.6-like [Cucumis sativus] >KGN62555.1 hyp...	[more]
XP_008444659.1	2.0e-77	72.80	PREDICTED: dof zinc finger protein DOF1.6-like [Cucumis melo]	[more]

BLAST of Carg25849 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G50410.1	6.3e-30	34.59	OBF binding protein 1	[more]
AT1G47655.1	8.0e-25	51.07	Dof-type zinc finger DNA-binding family protein	[more]
AT5G66940.1	1.7e-22	62.82	Dof-type zinc finger DNA-binding family protein	[more]
AT1G07640.3	3.7e-22	79.25	Dof-type zinc finger DNA-binding family protein	[more]
AT3G21270.1	1.8e-21	91.11	DOF zinc finger protein 2	[more]

BLAST of Carg25849 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39088\|DOF34_ARATH	1.1e-28	34.59	Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV...	[more]
sp\|Q9SX97\|DOF16_ARATH	1.4e-23	51.07	Dof zinc finger protein DOF1.6 OS=Arabidopsis thaliana OX=3702 GN=DOF1.6 PE=2 SV...	[more]
sp\|Q9FGD6\|DOF58_ARATH	3.0e-21	62.82	Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana OX=3702 GN=DOF5.8 PE=2 SV...	[more]
sp\|Q8L9V6\|DOF11_ARATH	6.7e-21	79.25	Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV...	[more]
sp\|Q94AR6\|DOF31_ARATH	3.3e-20	91.11	Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV...	[more]

BLAST of Carg25849 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BAC9\|A0A1S3BAC9_CUCME	1.3e-77	72.80	dof zinc finger protein DOF1.6-like OS=Cucumis melo OX=3656 GN=LOC103487930 PE=4...	[more]
tr\|A0A0A0LKY9\|A0A0A0LKY9_CUCSA	1.3e-77	72.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360720 PE=4 SV=1	[more]
tr\|A0A1U8AE19\|A0A1U8AE19_NELNU	8.7e-42	44.96	dof zinc finger protein DOF3.4-like OS=Nelumbo nucifera OX=4432 GN=LOC104601962 ...	[more]
tr\|F6H1E9\|F6H1E9_VITVI	3.4e-38	50.20	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g11310 PE=4 SV=...	[more]
tr\|A0A2N9J9V6\|A0A2N9J9V6_FAGSY	1.0e-37	42.13	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61999 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25849-RA	Carg25849-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 29..83 e-value: 3.6E-33 score: 113.4
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 31..67
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 33..83 e-value: 3.0E-22 score: 260.0
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 29..83 score: 29.18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..101
None	No IPR available	PANTHER	PTHR31992:SF12	DOF ZINC FINGER PROTEIN DOF3.4-RELATED	coord: 1..228
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 1..228

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25849	Cla022532	Watermelon (97103) v1	carwmB0263
Carg25849	Csa2G360720	Cucumber (Chinese Long) v2	carcuB0299
Carg25849	MELO3C010904	Melon (DHL92) v3.5.1	carmeB0274
Carg25849	ClCG08G015510	Watermelon (Charleston Gray)	carwcgB0264
Carg25849	CSPI02G19570	Wild cucumber (PI 183967)	carcpiB0303
Carg25849	Cucsa.232530	Cucumber (Gy14) v1	carcgyB0322
Carg25849	CmaCh05G002100	Cucurbita maxima (Rimu)	carcmaB0378
Carg25849	CmaCh12G005100	Cucurbita maxima (Rimu)	carcmaB0377
Carg25849	CmoCh05G002160	Cucurbita moschata (Rifu)	carcmoB0375
Carg25849	CmoCh12G004510	Cucurbita moschata (Rifu)	carcmoB0374
Carg25849	Lsi08G014320	Bottle gourd (USVL1VR-Ls)	carlsiB245
Carg25849	Cp4.1LG11g01700	Cucurbita pepo (Zucchini)	carcpeB0382
Carg25849	Cp4.1LG07g04420	Cucurbita pepo (Zucchini)	carcpeB0383
Carg25849	CsGy2G019440	Cucumber (Gy14) v2	carcgybB0286
Carg25849	MELO3C010904.2	Melon (DHL92) v3.6.1	carmedB0286
Carg25849	CsaV3_2G028270	Cucumber (Chinese Long) v3	carcucB0302
Carg25849	Cla97C08G159100	Watermelon (97103) v2	carwmbB0280
Carg25849	Bhi04G000273	Wax gourd	carwgoB0356

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25849	Carg11831	Silver-seed gourd	carcarB215

The following block(s) are covering this gene:

None