Carg25666 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25666
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nuclear transcription factor Y subunit B-1-like isoform X2
Location	Cucurbita_argyrosperma_scaffold_291 : 23457 .. 24052 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGGTTTACTTACTTTCCACAGAATCTTGTTTTTTCACAGAGAATTTTTATTTATTTTCATGGCAACATGAATTGAAAATTTCTTTCTTTACCATGTAATCATTTCTTAACATGTGGTGTAAATATCTGCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGTAATAATCTCTTCTCTCTCAACTTGTCAACACGCTATTTAGGAATATCCTCCTTTTCATTGCTAATAATTGGACTGAAATTCATGGTTATTATTAGCTTTTTACCGTTGCCAGTATTGTCTCTAATTGTTGAGTGTTGCTTAGGAGATAGACCAGTTTCTTCACTTCCCTTCATATATGTATCCTACCTTTTCTTCTCATATATCATTTGCTTGTCCAGAAACTCATAGGATTTCATCCTAGGTAGTTTATATACTTTTTTTCATATGCCTAGTTTCACCAGGGCAGCCAATGGCAGTTTATATTTAAATGATATGCATTTAATTTTGTAAGAAGATACA

mRNA sequence

TGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGTAATAATCTCTTCTCTCTCAACTTGTCAACACGCTATTTAGGAATATCCTCCTTTTCATTGCTAATAATTGGACTGAAATTCATGGTTATTATTAGCTTTTTACCGTTGCCAGTATTGTCTCTAATTGTTGAGTGTTGCTTAGGAGATAGACCAGTTTCTTCACTTCCCTTCATATATGTATCCTACCTTTTCTTCTCATATATCATTTGCTTGTCCAGAAACTCATAGGATTTCATCCTAGGTAGTTTATATACTTTTTTTCATATGCCTAGTTTCACCAGGGCAGCCAATGGCAGTTTATATTTAAATGATATGCATTTAATTTTGTAAGAAGATACA

Coding sequence (CDS)

TGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGTAATAATCTCTTCTCTCTCAACTTGTCAACACGCTATTTAG

Protein sequence

CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI

Homology

[Close]

BLAST of Carg25666 vs. NCBI nr
Match: XP_022942123.1 (nuclear transcription factor Y subunit B-1-like isoform X7 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI 56
           CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIISSLSTCQHAI
Sbjct: 184 CDAKGSSRGGEESAKRDAVGALPGQNS-QYLQPGALTYINTQVIISSLSTCQHAI 237

[Close]

BLAST of Carg25666 vs. NCBI nr
Match: XP_022986170.1 (nuclear transcription factor Y subunit B-1-like isoform X7 [Cucurbita maxima])

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI 56
           CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIIS LSTCQHAI
Sbjct: 120 CDAKGSSRGGEESAKRDAVGALPGQNS-QYLQPGALTYINTQVIISPLSTCQHAI 173

[Close]

BLAST of Carg25666 vs. NCBI nr
Match: XP_023542143.1 (nuclear transcription factor Y subunit B-1-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI 56
           CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIIS LST QHAI
Sbjct: 120 CDAKGSSRGGEESAKRDAVGALPGQNS-QYLQPGALTYINTQVIISPLSTFQHAI 173

[Close]

BLAST of Carg25666 vs. NCBI nr
Match: XP_022942119.1 (nuclear transcription factor Y subunit B-10-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-14
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV 44
           CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ+
Sbjct: 182 CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQL 224

[Close]

BLAST of Carg25666 vs. NCBI nr
Match: XP_022942117.1 (nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-14
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV 44
           CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ+
Sbjct: 184 CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQL 226

[Close]

BLAST of Carg25666 vs. TrEMBL
Match: tr|A0A0A0KRZ7|A0A0A0KRZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175930 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ 43
           CDAKGSSRGG+ESAKRDAVG LPGQNSQQY+QPG+LTYINTQ
Sbjct: 121 CDAKGSSRGGDESAKRDAVGVLPGQNSQQYMQPGSLTYINTQ 162

[Close]

BLAST of Carg25666 vs. TrEMBL
Match: tr|A0A1S3BD57|A0A1S3BD57_CUCME (nuclear transcription factor Y subunit B-1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488744 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVI 45
           CDAKGSSRGG+ESAKRDAVG L GQNSQQY+ PGAL YINTQ I
Sbjct: 121 CDAKGSSRGGDESAKRDAVGVLSGQNSQQYMPPGALAYINTQAI 164

[Close]

BLAST of Carg25666 vs. TrEMBL
Match: tr|A0A1S3BEC6|A0A1S3BEC6_CUCME (nuclear transcription factor Y subunit B-1-like isoform X5 OS=Cucumis melo OX=3656 GN=LOC103488744 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-11
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ 43
           CDAKGSSRGG+ESAKRDAVG L GQNSQQY+ PGAL YINTQ
Sbjct: 121 CDAKGSSRGGDESAKRDAVGVLSGQNSQQYMPPGALAYINTQ 162

[Close]

BLAST of Carg25666 vs. TrEMBL
Match: tr|A0A1S3BDN3|A0A1S3BDN3_CUCME (nuclear transcription factor Y subunit B-1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103488744 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-11
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ 43
           CDAKGSSRGG+ESAKRDAVG L GQNSQQY+ PGAL YINTQ
Sbjct: 121 CDAKGSSRGGDESAKRDAVGVLSGQNSQQYMPPGALAYINTQ 162

[Close]

BLAST of Carg25666 vs. TrEMBL
Match: tr|A0A1S3BEC1|A0A1S3BEC1_CUCME (nuclear transcription factor Y subunit B-1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488744 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-11
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ 43
           CDAKGSSRGG+ESAKRDAVG L GQNSQQY+ PGAL YINTQ
Sbjct: 121 CDAKGSSRGGDESAKRDAVGVLSGQNSQQYMPPGALAYINTQ 162

The following BLAST results are available for this feature:

BLAST of Carg25666 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942123.1	4.9e-19	98.18	nuclear transcription factor Y subunit B-1-like isoform X7 [Cucurbita moschata]	[more]
XP_022986170.1	1.8e-18	96.36	nuclear transcription factor Y subunit B-1-like isoform X7 [Cucurbita maxima]	[more]
XP_023542143.1	3.5e-17	94.55	nuclear transcription factor Y subunit B-1-like isoform X4 [Cucurbita pepo subsp...	[more]
XP_022942119.1	6.2e-14	97.67	nuclear transcription factor Y subunit B-10-like isoform X3 [Cucurbita moschata]	[more]
XP_022942117.1	6.2e-14	97.67	nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg25666 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25666 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25666 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRZ7\|A0A0A0KRZ7_CUCSA	1.3e-12	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175930 PE=4 SV=1	[more]
tr\|A0A1S3BD57\|A0A1S3BD57_CUCME	3.2e-11	84.09	nuclear transcription factor Y subunit B-1-like isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3BEC6\|A0A1S3BEC6_CUCME	9.4e-11	85.71	nuclear transcription factor Y subunit B-1-like isoform X5 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3BDN3\|A0A1S3BDN3_CUCME	9.4e-11	85.71	nuclear transcription factor Y subunit B-1-like isoform X4 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3BEC1\|A0A1S3BEC1_CUCME	9.4e-11	85.71	nuclear transcription factor Y subunit B-1-like isoform X1 OS=Cucumis melo OX=36...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25666-RA	Carg25666-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25666	Cla020078	Watermelon (97103) v1	carwmB0852
Carg25666	Csa5G175930	Cucumber (Chinese Long) v2	carcuB0867
Carg25666	MELO3C011726	Melon (DHL92) v3.5.1	carmeB0841
Carg25666	CSPI05G08870	Wild cucumber (PI 183967)	carcpiB0887
Carg25666	Cucsa.165970	Cucumber (Gy14) v1	carcgyB0972
Carg25666	CmoCh04G013120	Cucurbita moschata (Rifu)	carcmoB1149
Carg25666	CmoCh04G002710	Cucurbita moschata (Rifu)	carcmoB1148
Carg25666	Lsi04G008170	Bottle gourd (USVL1VR-Ls)	carlsiB774
Carg25666	Cp4.1LG01g04260	Cucurbita pepo (Zucchini)	carcpeB1186
Carg25666	CsGy5G006250	Cucumber (Gy14) v2	carcgybB0841
Carg25666	MELO3C011726.2	Melon (DHL92) v3.6.1	carmedB0852
Carg25666	CsaV3_5G006310	Cucumber (Chinese Long) v3	carcucB0892
Carg25666	Cla97C02G039490	Watermelon (97103) v2	carwmbB0888
Carg25666	Bhi07G000871	Wax gourd	carwgoB0992

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25666	Carg02068	Silver-seed gourd	carcarB625

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25666	Cucurbita maxima (Rimu)	carcmaB1179
Carg25666	Cucurbita maxima (Rimu)	carcmaB1180
Carg25666	Cucurbita pepo (Zucchini)	carcpeB1187
Carg25666	Watermelon (Charleston Gray)	carwcgB0825