Carg25585 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25585
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone-lysine N-methyltransferase
Location	Cucurbita_argyrosperma_scaffold_320 : 117400 .. 117732 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGATTTTATAACCCCCGCAGACTCTAGAATCTGGCCAGAGTTTCAAGGAGTCGAAGAAGCAGCAATGGCGGGAAGTTCATCGAGATCGGCATTCTGGTGGCCGGAATTCGAATTTTCCATCAGATCTTCCATATTCCGGTGGACCGATGTCCTCTCCTCGCTTTTCTCATGGAACTGGAGCTCCGCCTGGTTTCGCCGTTTGCCTCGCGGCCTTCTCAACACTCCGGTTGTCGACGACCTCGTCTGGTCCGTCATGACCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAA

mRNA sequence

ATGCTTGATTTTATAACCCCCGCAGACTCTAGAATCTGGCCAGAGTTTCAAGGAGTCGAAGAAGCAGCAATGGCGGGAAGTTCATCGAGATCGGCATTCTGGTGGCCGGAATTCGAATTTTCCATCAGATCTTCCATATTCCGGTGGACCGATGTCCTCTCCTCGCTTTTCTCATGGAACTGGAGCTCCGCCTGGTTTCGCCGTTTGCCTCGCGGCCTTCTCAACACTCCGGTTGTCGACGACCTCGTCTGGTCCGTCATGACCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAA

Coding sequence (CDS)

ATGCTTGATTTTATAACCCCCGCAGACTCTAGAATCTGGCCAGAGTTTCAAGGAGTCGAAGAAGCAGCAATGGCGGGAAGTTCATCGAGATCGGCATTCTGGTGGCCGGAATTCGAATTTTCCATCAGATCTTCCATATTCCGGTGGACCGATGTCCTCTCCTCGCTTTTCTCATGGAACTGGAGCTCCGCCTGGTTTCGCCGTTTGCCTCGCGGCCTTCTCAACACTCCGGTTGTCGACGACCTCGTCTGGTCCGTCATGACCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAA

Protein sequence

MLDFITPADSRIWPEFQGVEEAAMAGSSSRSAFWWPEFEFSIRSSIFRWTDVLSSLFSWNWSSAWFRRLPRGLLNTPVVDDLVWSVMTAFESVALVSMIGFFFVFYGCNL

Homology

[Close]

BLAST of Carg25585 vs. NCBI nr
Match: OAY42410.1 (hypothetical protein MANES_09G177900 [Manihot esculenta])

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 24  MAGSSSRSAFWWPEFEF---SIR-SSIFRWTDVLSSLFS---W-------NWSSAWFRRL 83
           MAG  S S F W   +F   S+R SSIFRW   +SS +S   W       NW S WF R 
Sbjct: 1   MAGWWSTSTFRWLGLDFAYSSLRSSSIFRWMQFMSSSYSSTWWAPRGVLVNWDSQWFLRW 60

Query: 84  PRGLLNTPVVDDLVWSVMTAFESVALVSMIGFFFVFYGCNL 111
               L+  +VDD+VWS++TAFESVALVSM+ FFFVF GC +
Sbjct: 61  --SALDFSIVDDVVWSLITAFESVALVSMLCFFFVFCGCTV 99

[Close]

BLAST of Carg25585 vs. NCBI nr
Match: KCW60566.1 (hypothetical protein EUGRSUZ_H03298 [Eucalyptus grandis])

HSP 1 Score: 76.3 bits (186), Expect = 7.5e-11
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 24  MAGSSSRSAFWWPEFEFSIRSSIFRWTDVLSSLFS----WNWSSAW-FRRLPRGLLNTPV 83
           M+G  S ++  W +F F +RSSIFRW  ++SS F+          W F R P   L   +
Sbjct: 1   MSGRWSVTSLRWLDFSFPLRSSIFRWPQLVSSYFTAARRVGGGLGWGFLRWPELGLGFSI 60

Query: 84  VDDLVWSVMTAFESVALVSMIGFFFVFYGCNL 111
           +DD+VWS++TAFESVALVSM+ FFF+F GC +
Sbjct: 61  LDDVVWSLVTAFESVALVSMLCFFFLFCGCTI 92

[Close]

BLAST of Carg25585 vs. NCBI nr
Match: CDO98738.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 27  SSSRSAFWWPEFEFSIRSSIFRWTDVLS-SLFSWNWSSAWFRRLPRGLLNTPVVDDLVWS 86
           SS+ S+  WPEFEFS+ +SIFRW   +  S F+  WS++ FR      L   +VD+ +W+
Sbjct: 9   SSALSSIRWPEFEFSVPASIFRWAAGIDFSYFTTGWSASTFR-----WLGFSIVDNAMWT 68

Query: 87  VMTAFESVALVSMIGFFFVFYGCNL 111
           V+T  ESVALV+M+ +FF+F GC L
Sbjct: 69  VITVLESVALVTMLCYFFIFCGCTL 88

[Close]

BLAST of Carg25585 vs. NCBI nr
Match: OIW07083.1 (hypothetical protein TanjilG_02717 [Lupinus angustifolius])

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 31  SAFWWPEFEFSIRSSIFRWTDVLSSLFSWNWSSAWFRRLPR--GLLNTPVVDDLVWSVMT 90
           S F W   EFS  SS+ RW  +++S  +  WS    RRL R  GL++  +VD+LVWS++T
Sbjct: 3   STFRWLMLEFSGGSSMTRWPGMVASYITPRWSP---RRLLRWSGLMSISIVDELVWSIVT 62

Query: 91  AFESVALVSMIGFFFVFYGCNL 111
           AFESVALVSM+ FFF+F GC +
Sbjct: 63  AFESVALVSMLCFFFLFCGCTI 81

[Close]

BLAST of Carg25585 vs. NCBI nr
Match: PSS00239.1 (Histone-lysine N-methyltransferase [Actinidia chinensis var. chinensis])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 29  SRSAFWWPEFEFSIRSSIFRWTDVLSSLFSWNW---------SSAWFRRLPRGLLNTPVV 88
           S SAF W +  FS   SI RW  +LSS  +  W         S +W    P+ LL++ +V
Sbjct: 7   SSSAFRWLDLNFSPPVSISRWPRLLSSYLTPIWPHSLGISVFSPSW---APQNLLHSSIV 66

Query: 89  DDLVWSVMTAFESVALVSMIGFFFVFYGCNL 111
           DD+VWS++TA ESVALVSM+ FFFVF GC +
Sbjct: 67  DDVVWSLITAVESVALVSMLCFFFVFCGCTI 94

[Close]

BLAST of Carg25585 vs. TAIR10
Match: AT5G26790.1 (unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-09
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 33  FWWPEFEFSIRSSIFRWTDVLSSLFSWNWSSAWFRRLPRGLLNTPVVDDLVWSVMTAFES 92
           +WWP   F+   S+ RW        SW        R P   L + VVDD+VW V+TAFES
Sbjct: 7   WWWP-IHFTSSGSVPRW-------LSW--------RRPELSLLSVVVDDVVWKVVTAFES 66

Query: 93  VALVSMIGFFFVFYGCNL 111
           VALVSM+ FFF+F GC +
Sbjct: 67  VALVSMLCFFFLFCGCTV 68

[Close]

BLAST of Carg25585 vs. TAIR10
Match: AT5G49525.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 47  FRWTDV-LSSLFSWNWSSAWFRRLPRGLLNTPVVDDLVWSVMTAFESVALVSMIGFFFVF 106
           FRW +V LSSL     SS W  RL     +  +VDDL+WS ++  ES+A+ + +  FF+F
Sbjct: 21  FRWPEVNLSSL-----SSGWNMRLLSLSGDLSIVDDLLWSFVSIIESLAITATVCCFFLF 80

Query: 107 YGCNL 111
            GC L
Sbjct: 81  CGCTL 80

[Close]

BLAST of Carg25585 vs. TrEMBL
Match: tr|A0A2C9VC06|A0A2C9VC06_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G177900 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 24  MAGSSSRSAFWWPEFEF---SIR-SSIFRWTDVLSSLFS---W-------NWSSAWFRRL 83
           MAG  S S F W   +F   S+R SSIFRW   +SS +S   W       NW S WF R 
Sbjct: 1   MAGWWSTSTFRWLGLDFAYSSLRSSSIFRWMQFMSSSYSSTWWAPRGVLVNWDSQWFLRW 60

Query: 84  PRGLLNTPVVDDLVWSVMTAFESVALVSMIGFFFVFYGCNL 111
               L+  +VDD+VWS++TAFESVALVSM+ FFFVF GC +
Sbjct: 61  --SALDFSIVDDVVWSLITAFESVALVSMLCFFFVFCGCTV 99

[Close]

BLAST of Carg25585 vs. TrEMBL
Match: tr|A0A059B3V1|A0A059B3V1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H03298 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 24  MAGSSSRSAFWWPEFEFSIRSSIFRWTDVLSSLFS----WNWSSAW-FRRLPRGLLNTPV 83
           M+G  S ++  W +F F +RSSIFRW  ++SS F+          W F R P   L   +
Sbjct: 1   MSGRWSVTSLRWLDFSFPLRSSIFRWPQLVSSYFTAARRVGGGLGWGFLRWPELGLGFSI 60

Query: 84  VDDLVWSVMTAFESVALVSMIGFFFVFYGCNL 111
           +DD+VWS++TAFESVALVSM+ FFF+F GC +
Sbjct: 61  LDDVVWSLVTAFESVALVSMLCFFFLFCGCTI 92

[Close]

BLAST of Carg25585 vs. TrEMBL
Match: tr|A0A068TTT5|A0A068TTT5_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00025640001 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 27  SSSRSAFWWPEFEFSIRSSIFRWTDVLS-SLFSWNWSSAWFRRLPRGLLNTPVVDDLVWS 86
           SS+ S+  WPEFEFS+ +SIFRW   +  S F+  WS++ FR      L   +VD+ +W+
Sbjct: 9   SSALSSIRWPEFEFSVPASIFRWAAGIDFSYFTTGWSASTFR-----WLGFSIVDNAMWT 68

Query: 87  VMTAFESVALVSMIGFFFVFYGCNL 111
           V+T  ESVALV+M+ +FF+F GC L
Sbjct: 69  VITVLESVALVTMLCYFFIFCGCTL 88

[Close]

BLAST of Carg25585 vs. TrEMBL
Match: tr|A0A2R6Q1G1|A0A2R6Q1G1_ACTCH (Histone-lysine N-methyltransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc24208 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.1e-10
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 29  SRSAFWWPEFEFSIRSSIFRWTDVLSSLFSWNW---------SSAWFRRLPRGLLNTPVV 88
           S SAF W +  FS   SI RW  +LSS  +  W         S +W    P+ LL++ +V
Sbjct: 7   SSSAFRWLDLNFSPPVSISRWPRLLSSYLTPIWPHSLGISVFSPSW---APQNLLHSSIV 66

Query: 89  DDLVWSVMTAFESVALVSMIGFFFVFYGCNL 111
           DD+VWS++TA ESVALVSM+ FFFVF GC +
Sbjct: 67  DDVVWSLITAVESVALVSMLCFFFVFCGCTI 94

[Close]

BLAST of Carg25585 vs. TrEMBL
Match: tr|A0A067JV03|A0A067JV03_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23206 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 24  MAGSSSRSAFWWPEFEF---SIRSSIFRW-TDVLSSLF---SW------NWSSAWFRRLP 83
           MAG  S S F W   +    S+RSSIFRW   ++SS +    W      NW    F R P
Sbjct: 1   MAGRWSTSGFRWLGLDLAYSSLRSSIFRWPAQLMSSSYLSPRWTPIGVLNWDPQRFLRWP 60

Query: 84  RGLLNTPVVDDLVWSVMTAFESVALVSMIGFFFVFYGCNL 111
              LN  ++DD++WS++TAFESVALVSM+ FFF+F GC +
Sbjct: 61  E--LNFSIIDDVMWSLITAFESVALVSMLCFFFLFCGCTV 98

The following BLAST results are available for this feature:

BLAST of Carg25585 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY42410.1	2.0e-11	50.50	hypothetical protein MANES_09G177900 [Manihot esculenta]	[more]
KCW60566.1	7.5e-11	46.74	hypothetical protein EUGRSUZ_H03298 [Eucalyptus grandis]	[more]
CDO98738.1	1.7e-10	47.06	unnamed protein product [Coffea canephora]	[more]
OIW07083.1	2.2e-10	51.22	hypothetical protein TanjilG_02717 [Lupinus angustifolius]	[more]
PSS00239.1	1.1e-09	47.25	Histone-lysine N-methyltransferase [Actinidia chinensis var. chinensis]	[more]

BLAST of Carg25585 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26790.1	2.9e-09	46.15	unknown protein	[more]
AT5G49525.1	1.5e-05	43.08	unknown protein	[more]

BLAST of Carg25585 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25585 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2C9VC06\|A0A2C9VC06_MANES	1.3e-11	50.50	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G177900 PE=4 SV=...	[more]
tr\|A0A059B3V1\|A0A059B3V1_EUCGR	4.9e-11	46.74	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H03298 PE=4 SV...	[more]
tr\|A0A068TTT5\|A0A068TTT5_COFCA	1.1e-10	47.06	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00025640001 PE=4 ...	[more]
tr\|A0A2R6Q1G1\|A0A2R6Q1G1_ACTCH	7.1e-10	47.25	Histone-lysine N-methyltransferase OS=Actinidia chinensis var. chinensis OX=1590...	[more]
tr\|A0A067JV03\|A0A067JV03_JATCU	1.6e-09	46.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23206 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25585-RA	Carg25585-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726	FAMILY NOT NAMED	coord: 48..109
None	No IPR available	PANTHER	PTHR33726:SF1	SUBFAMILY NOT NAMED	coord: 48..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25585	CSPI02G04800	Wild cucumber (PI 183967)	carcpiB0973
Carg25585	Cucsa.090550	Cucumber (Gy14) v1	carcgyB1052
Carg25585	Cla97C02G040610	Watermelon (97103) v2	carwmbB0979

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25585	Carg11996	Silver-seed gourd	carcarB524

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25585	Wax gourd	carwgoB1079
Carg25585	Cucumber (Gy14) v2	carcgybB0923
Carg25585	Cucurbita maxima (Rimu)	carcmaB1280
Carg25585	Cucurbita moschata (Rifu)	carcmoB1251
Carg25585	Cucurbita pepo (Zucchini)	carcpeB1293
Carg25585	Cucumber (Chinese Long) v2	carcuB0950
Carg25585	Cucumber (Chinese Long) v3	carcucB0974
Carg25585	Bottle gourd (USVL1VR-Ls)	carlsiB850
Carg25585	Melon (DHL92) v3.5.1	carmeB0919
Carg25585	Melon (DHL92) v3.6.1	carmedB0926
Carg25585	Watermelon (Charleston Gray)	carwcgB0910
Carg25585	Watermelon (97103) v1	carwmB0934