Carg25539 (gene) Silver-seed gourd

NameCarg25539
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_302 : 112860 .. 113441 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAATACCCCGCCCAGCAATTGGCCCTCAACAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAGCCGGATAAGAGTAATAAGCGTCATCTTTTGGAAGTGTTCTCAGATGGAATCACAATCCTTTATTTTATTCGAATTTAAGTTCTAAATGATTGCATGATGTCCTTTTCCAATCTTTGTATATAAATGGGATAAATCATTTCATTTGATCAATCTAGTGTGATGGTGCTTCTATTTATATGTTATCATCCTATATTTTATTTAAGTGGTTATGTGTTTATTTGCTCTTAATAAAATATAAATGGAGTGGAACCAGATTCATGGTTGCAAAATCCGGAACTCAAATTCATGGTTGCAAAATCCGGAACTCAAATTCATGGTTGCAAACCCGGAGTTGATGGATAACAAATTCCTATTTTAGTGGTAGCCGCCATTGATGCCCTCTCCAGCTCCCTCTTTTCACCAGTGGCTGAATTTTCCAGCCTCACCTCCTACTCCTACTCGAAGGACAATCAGTTCTTCGCCTTCGATCCTCTCTCTGATCTCTGGCTCCTCCTCCTAACTTGCCTCTGA

mRNA sequence

ATGCAGAATACCCCGCCCAGCAATTGGCCCTCAACAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAGCCGGATAAGATGGTAGCCGCCATTGATGCCCTCTCCAGCTCCCTCTTTTCACCAGTGGCTGAATTTTCCAGCCTCACCTCCTACTCCTACTCGAAGGACAATCAGTTCTTCGCCTTCGATCCTCTCTCTGATCTCTGGCTCCTCCTCCTAACTTGCCTCTGA

Coding sequence (CDS)

ATGCAGAATACCCCGCCCAGCAATTGGCCCTCAACAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAGCCGGATAAGATGGTAGCCGCCATTGATGCCCTCTCCAGCTCCCTCTTTTCACCAGTGGCTGAATTTTCCAGCCTCACCTCCTACTCCTACTCGAAGGACAATCAGTTCTTCGCCTTCGATCCTCTCTCTGATCTCTGGCTCCTCCTCCTAACTTGCCTCTGA

Protein sequence

MQNTPPSNWPSTRSKKQEARSKKQPDKMVAAIDALSSSLFSPVAEFSSLTSYSYSKDNQFFAFDPLSDLWLLLLTCL
BLAST of Carg25539 vs. NCBI nr
Match: XP_023549422.1 (ribosomal protein S6 kinase 2 alpha-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 39 LFSPVAEFSSLTSYSYSKDNQFFAFDPLSDLWLLL 74
          LFSPVAEFS+LT  S SKDNQFFAFDPLSDLW  L
Sbjct: 7  LFSPVAEFSNLT--SDSKDNQFFAFDPLSDLWFRL 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023549422.12.1e-0482.86ribosomal protein S6 kinase 2 alpha-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25539-RACarg25539-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26