Carg25512 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25512
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein PIR
Location	Cucurbita_argyrosperma_scaffold_203 : 151055 .. 151755 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTCTTGAAGCACACTTCCTCAACTGAAATTCGGAGTAAAAACAAAGAAATCAACACGAAAGAAGAAAGCGAGTTTACCGAATCAGAACGATTTCAACTCAGATTCTTAGCTACTTATGATCTTAAACCAGACTGCTTCCTAGATCTCTCTTTGTTTGAGTCCTCCATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCGTTGTCCACATTCTCCCTTGAGGTAATGCTTGACCAGTTTCAGAAACTATCATTTGCTTGTTTTATTGATGGTTTTTTTGACTTTCGATGCTTTACTAATCGTTTTTGTAAGACTTATTTCAGTTGTTCAGCTTTAAATTTAGTATGTTTTGGTCAGAAATGAGAATTCTGCAGTGGGTTTTTCTGCTGCAATTTGAATGCTTGCATTTCTTACATTCCGACTTCAATTCATGTAGGATGACCAGCCAGAGTTGCAAGGACCTGGCGTTTGGGTGTCAACTGAGAGAGGCGCAACCGAGAGTCCAATAGGTATGCATTTTTTGGAGTTGTGTATGGATATCGAGCATCTAGATTTAGTACGCTATGATTTTGGAGTTGAAAAGAATGCCTGCTATTGAATGATACCTTTTCTATTCTTCAAATGTGGGTGATCGTAATAGGAACTTTTTACTGGAACGGAACAGAGGATTTGTGGTCATTGTATTTTCATTGACAATTGC

mRNA sequence

TAATTTCTTGAAGCACACTTCCTCAACTGAAATTCGGAGTAAAAACAAAGAAATCAACACGAAAGAAGAAAGCGAGTTTACCGAATCAGAACGATTTCAACTCAGATTCTTAGCTACTTATGATCTTAAACCAGACTGCTTCCTAGATCTCTCTTTGTTTGAGTCCTCCATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCGTTGTCCACATTCTCCCTTGAGGATGACCAGCCAGAGTTGCAAGGACCTGGCGTTTGGGTGTCAACTGAGAGAGGCGCAACCGAGAGTCCAATAGGTATGCATTTTTTGGAGTTGTGTATGGATATCGAGCATCTAGATTTAGTACGCTATGATTTTGGAGTTGAAAAGAATGCCTGCTATTGAATGATACCTTTTCTATTCTTCAAATGTGGGTGATCGTAATAGGAACTTTTTACTGGAACGGAACAGAGGATTTGTGGTCATTGTATTTTCATTGACAATTGC

Coding sequence (CDS)

ATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCGTTGTCCACATTCTCCCTTGAGGATGACCAGCCAGAGTTGCAAGGACCTGGCGTTTGGGTGTCAACTGAGAGAGGCGCAACCGAGAGTCCAATAGGTATGCATTTTTTGGAGTTGTGTATGGATATCGAGCATCTAGATTTAGTACGCTATGATTTTGGAGTTGAAAAGAATGCCTGCTATTGA

Protein sequence

MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPIGMHFLELCMDIEHLDLVRYDFGVEKNACY

Homology

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BLAST of Carg25512 vs. NCBI nr
Match: XP_008450850.1 (PREDICTED: protein PIR [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. NCBI nr
Match: KGN66235.1 (hypothetical protein Csa_1G587460 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. NCBI nr
Match: XP_011659977.1 (PREDICTED: protein PIR [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. NCBI nr
Match: XP_022961250.1 (protein PIR isoform X1 [Cucurbita moschata] >XP_022961251.1 protein PIR isoform X1 [Cucurbita moschata] >XP_022961252.1 protein PIR isoform X1 [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. NCBI nr
Match: XP_022988006.1 (protein PIR isoform X1 [Cucurbita maxima] >XP_022988007.1 protein PIR isoform X1 [Cucurbita maxima] >XP_022988008.1 protein PIR isoform X1 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. TAIR10
Match: AT5G18410.1 (transcription activators)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED+QPE+QGP V VS ER AT+SPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPI 42

[Close]

BLAST of Carg25512 vs. Swiss-Prot
Match: sp|Q5S2C3|PIR_ARATH (Protein PIR OS=Arabidopsis thaliana OX=3702 GN=PIR PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 5.1e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED+QPE+QGP V VS ER AT+SPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPI 42

[Close]

BLAST of Carg25512 vs. TrEMBL
Match: tr|A0A1S3BQV7|A0A1S3BQV7_CUCME (protein PIR OS=Cucumis melo OX=3656 GN=LOC103492319 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. TrEMBL
Match: tr|A0A0A0LWG4|A0A0A0LWG4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587460 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. TrEMBL
Match: tr|A0A0R0KPJ4|A0A0R0KPJ4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100814483 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED+QPE+QGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. TrEMBL
Match: tr|I1NCF6|I1NCF6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100775991 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED+QPE+QGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPI 42

[Close]

BLAST of Carg25512 vs. TrEMBL
Match: tr|I1JRU7|I1JRU7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100814483 PE=4 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED+QPE+QGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPI 42

The following BLAST results are available for this feature:

BLAST of Carg25512 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450850.1	4.7e-14	100.00	PREDICTED: protein PIR [Cucumis melo]	[more]
KGN66235.1	4.7e-14	100.00	hypothetical protein Csa_1G587460 [Cucumis sativus]	[more]
XP_011659977.1	4.7e-14	100.00	PREDICTED: protein PIR [Cucumis sativus]	[more]
XP_022961250.1	4.7e-14	100.00	protein PIR isoform X1 [Cucurbita moschata] >XP_022961251.1 protein PIR isoform ...	[more]
XP_022988006.1	4.7e-14	100.00	protein PIR isoform X1 [Cucurbita maxima] >XP_022988007.1 protein PIR isoform X1...	[more]

BLAST of Carg25512 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18410.1	2.8e-13	83.33	transcription activators	[more]

BLAST of Carg25512 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5S2C3\|PIR_ARATH	5.1e-12	83.33	Protein PIR OS=Arabidopsis thaliana OX=3702 GN=PIR PE=1 SV=2	[more]

BLAST of Carg25512 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQV7\|A0A1S3BQV7_CUCME	3.1e-14	100.00	protein PIR OS=Cucumis melo OX=3656 GN=LOC103492319 PE=4 SV=1	[more]
tr\|A0A0A0LWG4\|A0A0A0LWG4_CUCSA	3.1e-14	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587460 PE=4 SV=1	[more]
tr\|A0A0R0KPJ4\|A0A0R0KPJ4_SOYBN	2.0e-13	95.24	Uncharacterized protein OS=Glycine max OX=3847 GN=100814483 PE=4 SV=1	[more]
tr\|I1NCF6\|I1NCF6_SOYBN	2.0e-13	95.24	Uncharacterized protein OS=Glycine max OX=3847 GN=100775991 PE=4 SV=1	[more]
tr\|I1JRU7\|I1JRU7_SOYBN	2.0e-13	95.24	Uncharacterized protein OS=Glycine max OX=3847 GN=100814483 PE=4 SV=2	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25512-RA	Carg25512-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25512	Watermelon (97103) v2	carwmbB0286
Carg25512	Wax gourd	carwgoB0363
Carg25512	Cucumber (Chinese Long) v3	carcucB0308
Carg25512	Cucumber (Gy14) v2	carcgybB0293
Carg25512	Cucumber (Gy14) v1	carcgyB0327
Carg25512	Cucurbita maxima (Rimu)	carcmaB0389
Carg25512	Cucurbita moschata (Rifu)	carcmoB0387
Carg25512	Cucurbita pepo (Zucchini)	carcpeB0392
Carg25512	Wild cucumber (PI 183967)	carcpiB0309
Carg25512	Cucumber (Chinese Long) v2	carcuB0305
Carg25512	Bottle gourd (USVL1VR-Ls)	carlsiB251
Carg25512	Watermelon (Charleston Gray)	carwcgB0270