Carg25439 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25439
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	THUMP domain-containing protein 1-like
Location	Cucurbita_argyrosperma_scaffold_300 : 133917 .. 137769 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACTTGGAACTCTCGTGTTCTCTGCAATGGCCGCTGAGAACAAACCCTCCACCGCCGGCAAGAAACGGAAGCAGCGCTATCGTCCCAACAATGTTTTCTCCCAATCTTTTCTTCTTCTTCTTCTTACCTTCTCTATTCTATTGTCGATTTACTCAATTCCTTCTAATTTTCTCGTTGTTCTCCTTCCTCAGAAACCAGTGAAGAAGAAGGGCCATTACCCGTTACGCCCTGGAGTCCAAGGTTTCTTTATCACCTGCGATGGCGGCCGAGAGCGTCAAGCCTCCATTGAAGCTATCAATGTTATCGACTCTGTATGACTTTGCCCCTTTTTCACTGCTTCTGGGTTATGTTTTGTTGGGATTGAGATGAATATTTCTATGTATTACGTTTTGATTGTCATTGAACTGTGTTCCTATTGCCTTATTGTGGAAGTCATGGGGGAATTGAATCATTCCTTTTGTTTTGTTATAAATTTCCGAGATGAAACTTAGAGAGATTTGGAGGCAGATAATGTAAAGCGCGTTACCCAATGATTCAAAGATGTTTGATGTGCGAAGGGTCTATTTGTAAAGCTTATTAGTGAGTAATGAATACTAATCCAAAGTTATCTATGATAGACGTAAAGGGAAAATATTACGAAGGAAATTTTTTAAGCTTATCTCAAAGTAATTCTGGTTTTTGTCAATGTTATGTCTAATTGTTCGTTGTAGGATTATTAATTGTTCCTTCTTGAGATGCTATACATATATGTTTGTTCTGTTTAAAGGCTTTACTGTTGATTTCTTTACAAGAACATTGATTTTTACGTATTCGTTTTCTAATATTCCATTTTCAGTTTTTTGACGAGTTCGTCCATGGAAAGGGTTCTGGCGTGAAGCTGACAGAATTAGCTGATAAACCTTTAAACAAAAAAATTAAGTTTTCAGATTCTGAATCTTCTGGTTCTGATGATGATGATGATGGGGAAGAGGAGGAGGAGGAGGTGGGGGATGAGAACGAGGACGAGAACAAGGAGGTTCCCGAGGAAGAAAGCAAGTCTAAGTCTCCTAAGGAGCAAAATGATCCTTGCAATGAAAACAAAACAACGGATGTTCCAGATACTCATCAAGGGGACATTGTAGCCACCGAAAGTCGAACGGAGGAAAAATCAAATGACAATGAAAAGGATATAAAGTGTCCAGAAGTTCCATCGGAGGAAGTTGAGGAGCCACCGAAAAAGAAACACTGCATTGAAGCAGATGCATCAAAAAGTATTGTTAAGGAGAAGGAGAAATCCATTGATCAATTGATTGAAGCTGAACTTCAGGAACTGGGAGATAAAAGCAAGGTCAGTGATAAAATTTCAACGTTAAGGTTATTCTTTTTCTGATCTTACAACTATTAACTTTGTATGAGTTATGATTATGACTTACAAGCTATTTTAAACATCCAGACTGATAATTGATCCTTTGTTTTCCAATCTTCTTATCATGAAATGTGGTTTAGAGACGTTTTTTCAACCTTGATTCGGGGTGCAATGGTGTTGTCTTTATCCAAATGCGGAAGAACGATGGAGAACCTGGTCCTGAGGCTGTTGTGCAGCATATGATGACATCTATTGCTTCAACAAGGAAACACATATCGAGGTTTGCATATAGTTCTTGAATTTCTATAAGGAATGAAGCATGAAGAAGTTCATATACTGGATCACTAAAAGGCTTTATTGTATATTTGATATATCCCAGGTTCATACTTAGAGTACTGCCTGTTGAAGTGGCATGCTATGCTTCAGTGGAGGAGATCTCCAGGGCAATAAAGCCTCTAATAGAAAAGAACTTTCCTGTTGAAAGTCAGAGTCCTAAAAAGGTATATCCCTACTTTTACGTTCCCTTTTAATCGTCTCCCAATTTCAATACCATGGTGTCAGTTCCTTTGTGATAAAGGAACAACTATAGATTCAATGACTATTTGAATACGATCACTTGACGCTACTATGAGTTGGAAATAGTTGCGCTGATTTCTTGATGGCTTTATGCATTCTAAGATTGAGGACAATTGTTTCAAATTTTGTTTCTAGATTTGTGCTTGGTTTTGTGACTGGAGTTCTAGGCCACATATCCAATTCACTTAAGACTTGGAGAGCTAAAGGCGTCATTGAGTGAAAAGTAGAGTAGGTTGTATATACTTGTAACTGTTTAAAGCTGTTGTGATGTAGTTGTCAACCGGGTAGAAAATAAGGAGAGTCCATGGCTATTCATCTTATAATGGCTGTGGTTTTCTAGTTTTTGCAGTTTCGATATCTCTGACCCTACACGTTTTGACACTTCCTAGTTGCATGATGAAATTGCAACCTCCAGTTGGTAAAGGACATGGAAGAAAATTCAACTAAGTGACTATAATCGATGATTAATTGATTTATAAAAGAAACTATCCTATAAATACTTTACATGAAGCGAACATGAATCTCGTTTTCTAGTGACTTGACGTGAGGATGCTATTATTAGAATGATCACAAATTAACATTTCAATTTTTTTTTATCTTTCTCGCAGTTTGCAGTATTATACGAGGCCCGTTCAAATACTGGCATTGACAGGGCAACTATAATTAATACTGTAGCAAAAGCTGTTCCCGAGCCTCATAAAGTTGATTTGAACAATCCTGAAAAAACCATTGTGGTTGAGATTGTCAAGGTGAGGAACTCTGTTCTTGGAAGTAAATAGTTTAGAGATTTCTCCTTAGACCTGATTCAGTATATAGAATGTTTGCCATAGCCACCCACTTGGTGGGGTATGTGCCGCTTTAAATTGTGTTTAAAATATTCTCTGCTAGCTGAAGCTATATGCATCTTAAACCTTGCTTTGAGGATTTAATCTAATTTTGGTTTCAAACTTGACTTCTTTTACCGAATTTTGATTGTTTTAGATACATATACTGCTTGAGGTTAAATCTGCTGGGAAGTAACTGAAGTTCATACTTTTATTATCCTTACCCAAGTAGGGTAAATGGAAAGTGTTGTAGACCTCTCAAAGCCCTTGCAGAACTAGTTTTATCTGCAAGTTAGTCTGGGAGGCAAAAACTATGGCTTTAGAACTTGAAGAGTTGGCTGAACCATTGGTTTGGAACGTGTTTGGTGAGACTGGATGCTAATAGAATAGGTTGTGTAACAGCCTGAGCCCGAGCCCTCTGCTAGTAGATATTGTCCTCTTTGGGCTTTCTCTTTCGGACTTCCCCTCAAGGTTTTTAAAATGCGTTTACTAGGGAGAGGTGAATGTTTCATTCTCCTCCCCCACCGATGTGGAATCTCACAGGCTGCCTCGGATGGAAGTTGACAACCCAAAATAATGTTTGATGATTGATGACGATATGTGTTGTTTGTTATGAAATGTGATTGGTCTGGAATGTGGACAATAACTGTGTAATCTTACATTGTGTTTTTTGTTGGGTTGTTCAGACAATTTGCTTGATTGGAGTAGTGGAGAAGTACAAGGAGTTATCCAAGTACAACCTAAGGCAGCTGACATCAAGAAAGCAATAGAAATAGGTTAGGTTAAGTTATTTGGTTTTCATGTCTGTTTCAGCTTTGGTCGGACGGACACCTTTTAACTCTGAAATGTATTAATCTGCATGTTTCTTGATGTGTAGGGTTAGTTTAGTTTAGCTTTATGGTTTTAAATTTCATAATATGCTTCTACTGTTCTGTTGAACTACTATTGAGTTTGATGGAGGAAGATGATTGAAAGATTCATCATATCTCTTGTTTGTTTCTATGGCTTGCATTTACATGGAGTTAAATATTTTTTTAAATCAATGACTCGAACTCGAAAGATAATGCATGAGTATCCAACACAATGTATTAGATGATATATGGTAT

mRNA sequence

ACAACTTGGAACTCTCGTGTTCTCTGCAATGGCCGCTGAGAACAAACCCTCCACCGCCGGCAAGAAACGGAAGCAGCGCTATCGTCCCAACAATAAACCAGTGAAGAAGAAGGGCCATTACCCGTTACGCCCTGGAGTCCAAGGTTTCTTTATCACCTGCGATGGCGGCCGAGAGCGTCAAGCCTCCATTGAAGCTATCAATGTTATCGACTCTTTTTTTGACGAGTTCGTCCATGGAAAGGGTTCTGGCGTGAAGCTGACAGAATTAGCTGATAAACCTTTAAACAAAAAAATTAAGTTTTCAGATTCTGAATCTTCTGGTTCTGATGATGATGATGATGGGGAAGAGGAGGAGGAGGAGGTGGGGGATGAGAACGAGGACGAGAACAAGGAGGTTCCCGAGGAAGAAAGCAAGTCTAAGTCTCCTAAGGAGCAAAATGATCCTTGCAATGAAAACAAAACAACGGATGTTCCAGATACTCATCAAGGGGACATTGTAGCCACCGAAAGTCGAACGGAGGAAAAATCAAATGACAATGAAAAGGATATAAAGTGTCCAGAAGTTCCATCGGAGGAAGTTGAGGAGCCACCGAAAAAGAAACACTGCATTGAAGCAGATGCATCAAAAAGTATTGTTAAGGAGAAGGAGAAATCCATTGATCAATTGATTGAAGCTGAACTTCAGGAACTGGGAGATAAAAGCAAGAGACGTTTTTTCAACCTTGATTCGGGGTGCAATGGTGTTGTCTTTATCCAAATGCGGAAGAACGATGGAGAACCTGGTCCTGAGGCTGTTGTGCAGCATATGATGACATCTATTGCTTCAACAAGGAAACACATATCGAGGTTCATACTTAGAGTACTGCCTGTTGAAGTGGCATGCTATGCTTCAGTGGAGGAGATCTCCAGGGCAATAAAGCCTCTAATAGAAAAGAACTTTCCTGTTGAAAGTCAGAGTCCTAAAAAGTTTGCAGTATTATACGAGGCCCGTTCAAATACTGGCATTGACAGGGCAACTATAATTAATACTGTAGCAAAAGCTGTTCCCGAGCCTCATAAAGTTGATTTGAACAATCCTGAAAAAACCATTGTGGTTGAGATTGTCAAGACAATTTGCTTGATTGGAGTAGTGGAGAAGTACAAGGAGTTATCCAAGTACAACCTAAGGCAGCTGACATCAAGAAAGCAATAGAAATAGGTTAGGTTAAGTTATTTGGTTTTCATGTCTGTTTCAGCTTTGGTCGGACGGACACCTTTTAACTCTGAAATGTATTAATCTGCATGTTTCTTGATGTGTAGGGTTAGTTTAGTTTAGCTTTATGGTTTTAAATTTCATAATATGCTTCTACTGTTCTGTTGAACTACTATTGAGTTTGATGGAGGAAGATGATTGAAAGATTCATCATATCTCTTGTTTGTTTCTATGGCTTGCATTTACATGGAGTTAAATATTTTTTTAAATCAATGACTCGAACTCGAAAGATAATGCATGAGTATCCAACACAATGTATTAGATGATATATGGTAT

Coding sequence (CDS)

ATGGCCGCTGAGAACAAACCCTCCACCGCCGGCAAGAAACGGAAGCAGCGCTATCGTCCCAACAATAAACCAGTGAAGAAGAAGGGCCATTACCCGTTACGCCCTGGAGTCCAAGGTTTCTTTATCACCTGCGATGGCGGCCGAGAGCGTCAAGCCTCCATTGAAGCTATCAATGTTATCGACTCTTTTTTTGACGAGTTCGTCCATGGAAAGGGTTCTGGCGTGAAGCTGACAGAATTAGCTGATAAACCTTTAAACAAAAAAATTAAGTTTTCAGATTCTGAATCTTCTGGTTCTGATGATGATGATGATGGGGAAGAGGAGGAGGAGGAGGTGGGGGATGAGAACGAGGACGAGAACAAGGAGGTTCCCGAGGAAGAAAGCAAGTCTAAGTCTCCTAAGGAGCAAAATGATCCTTGCAATGAAAACAAAACAACGGATGTTCCAGATACTCATCAAGGGGACATTGTAGCCACCGAAAGTCGAACGGAGGAAAAATCAAATGACAATGAAAAGGATATAAAGTGTCCAGAAGTTCCATCGGAGGAAGTTGAGGAGCCACCGAAAAAGAAACACTGCATTGAAGCAGATGCATCAAAAAGTATTGTTAAGGAGAAGGAGAAATCCATTGATCAATTGATTGAAGCTGAACTTCAGGAACTGGGAGATAAAAGCAAGAGACGTTTTTTCAACCTTGATTCGGGGTGCAATGGTGTTGTCTTTATCCAAATGCGGAAGAACGATGGAGAACCTGGTCCTGAGGCTGTTGTGCAGCATATGATGACATCTATTGCTTCAACAAGGAAACACATATCGAGGTTCATACTTAGAGTACTGCCTGTTGAAGTGGCATGCTATGCTTCAGTGGAGGAGATCTCCAGGGCAATAAAGCCTCTAATAGAAAAGAACTTTCCTGTTGAAAGTCAGAGTCCTAAAAAGTTTGCAGTATTATACGAGGCCCGTTCAAATACTGGCATTGACAGGGCAACTATAATTAATACTGTAGCAAAAGCTGTTCCCGAGCCTCATAAAGTTGATTTGAACAATCCTGAAAAAACCATTGTGGTTGAGATTGTCAAGACAATTTGCTTGATTGGAGTAGTGGAGAAGTACAAGGAGTTATCCAAGTACAACCTAAGGCAGCTGACATCAAGAAAGCAATAG

Protein sequence

MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVIDSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDENKEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQLTSRKQ

Homology

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BLAST of Carg25439 vs. NCBI nr
Match: XP_023531982.1 (THUMP domain-containing protein 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 651.4 bits (1679), Expect = 2.0e-183
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP
Sbjct: 121 XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 387

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BLAST of Carg25439 vs. NCBI nr
Match: XP_022930547.1 (THUMP domain-containing protein 1 homolog [Cucurbita moschata])

HSP 1 Score: 619.8 bits (1597), Expect = 6.4e-174
Identity = 374/387 (96.64%), Postives = 374/387 (96.64%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DSFFDE VHGKGSGVKLTELADKPLNKKI  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DSFFDELVHGKGSGVKLTELADKPLNKKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           XXXXXXXXXXXXXXX   PC     TDVPD HQGD VATESRTEEKSNDNEKDIKCPEVP
Sbjct: 121 XXXXXXXXXXXXXXXXXXPCXXXXXTDVPDPHQGDTVATESRTEEKSNDNEKDIKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 387

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BLAST of Carg25439 vs. NCBI nr
Match: XP_022967605.1 (THUMP domain-containing protein 1 homolog [Cucurbita maxima])

HSP 1 Score: 617.5 bits (1591), Expect = 3.2e-173
Identity = 374/387 (96.64%), Postives = 374/387 (96.64%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DSFFDE VHGKGSGVKLTELADKPLNKKIKF XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DSFFDELVHGKGSGVKLTELADKPLNKKIKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           XXXXXXXXXXXXXXX  DPCN     DVP  HQGD VATESRTEEKSNDNEKDIKCPEV 
Sbjct: 121 XXXXXXXXXXXXXXXXXDPCNXXXXXDVPXXHQGDTVATESRTEEKSNDNEKDIKCPEVR 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 386

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BLAST of Carg25439 vs. NCBI nr
Match: XP_022154313.1 (THUMP domain-containing protein 1 [Momordica charantia])

HSP 1 Score: 533.9 bits (1374), Expect = 4.6e-148
Identity = 323/387 (83.46%), Postives = 343/387 (88.63%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPST  KKRKQRY P+NKPVKKKGHYPL PGVQGFF+TCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTGAKKRKQRYLPHNKPVKKKGHYPLHPGVQGFFLTCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DSFF+E VHGK SGVKL++LADKPLNKKIKF         XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DSFFEELVHGKVSGVKLSQLADKPLNKKIKF---------XXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           XXXXXXXXXXXXXXX          T+  D HQGD V TE++TEEKSNDN  D+KC EV 
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXTEKVDPHQGDAVVTENQTEEKSNDN-SDVKCHEVL 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           S EVEEPP KKHCIEAD SK++V+EK KSIDQLIEAEL+ELGDK+KRR FNLDSGCNGVV
Sbjct: 181 SNEVEEPPSKKHCIEADTSKNVVQEKAKSIDQLIEAELEELGDKNKRRLFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRK DGEPGPE VV+HMMTSIASTRKHISRFILRVLP+EVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKGDGEPGPEDVVKHMMTSIASTRKHISRFILRVLPIEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVES+SP KFAVLYEAR+N+GIDRATIINTVAK VPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESESPVKFAVLYEARANSGIDRATIINTVAKCVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVE+YKELSKYNLRQLTS KQ
Sbjct: 361 TICLIGVVERYKELSKYNLRQLTSGKQ 377

[Close]

BLAST of Carg25439 vs. NCBI nr
Match: XP_008450398.1 (PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein 1 homolog [Cucumis melo])

HSP 1 Score: 512.7 bits (1319), Expect = 1.1e-141
Identity = 315/387 (81.40%), Postives = 329/387 (85.01%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAA+NKPS  GKKRKQR+ P+NKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAADNKPSAGGKKRKQRFLPHNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DSFFDE  HGK  GVKLTELADKPLNKKIKF        XXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DSFFDELAHGKNCGVKLTELADKPLNKKIKF-----SDSXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           XXXXXXXXXXXXXXX                                      +KCPEVP
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPP KKHC+EADASKS +KEKEKSIDQLIEAELQELGDK+KRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPNKKHCVEADASKSNIKEKEKSIDQLIEAELQELGDKTKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGP+AVVQHMMTSIASTRKHISRFILR+LP+EVACYASVEEI+RAIKPLI
Sbjct: 241 FIQMRKNDGEPGPKAVVQHMMTSIASTRKHISRFILRILPIEVACYASVEEITRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFP+ESQ+  KFAVLYEAR+NTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPIESQNAVKFAVLYEARANTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKE SKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKEFSKYNLRQLTSRKQ 382

[Close]

BLAST of Carg25439 vs. TAIR10
Match: AT5G12410.1 (THUMP domain-containing protein)

HSP 1 Score: 359.0 bits (920), Expect = 3.7e-99
Identity = 232/377 (61.54%), Postives = 280/377 (74.27%), Query Frame = 0


Query: 12  KKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVIDSFFDEFVHGK 71
           KKRKQ YRP N+PVKKKG YPL+PGVQGFFI+CDGGRE QA+ EAINVIDSFF+E + G 
Sbjct: 8   KKRKQHYRPQNRPVKKKGSYPLKPGVQGFFISCDGGREFQAAQEAINVIDSFFEELIQGT 67

Query: 72  GSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 131
            S V    L   P+NKK+ FXXXXXXXXXXXXXXXXXXXXXXXXXX            XX
Sbjct: 68  DSKVN-PGLFGNPINKKVTFXXXXXXXXXXXXXXXXXXXXXXXXXXKAVVSEGGNDLVXX 127

Query: 132 XXXXQNDPCNENKTTDVPDTHQGDI---VATESRTEEKSNDNEKDIKCPEVPSEEVEEPP 191
           XXXX                   ++      E+  EE+   N+K+           +EPP
Sbjct: 128 XXXXXXXXXXXXXXXXXXXXXXCEVKQLAENETVKEEEDKGNQKN---------GGDEPP 187

Query: 192 KKKHCI-EADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQMRKN 251
           +KK C  EA+    + +  EKSID+LIEAEL+ELGDKSKRRF  LD GCNG+VFIQM+K 
Sbjct: 188 RKKTCTEEANPLAKVNENAEKSIDKLIEAELKELGDKSKRRFMKLDPGCNGLVFIQMKKR 247

Query: 252 DGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVE 311
           DG+P P+ +VQH MTS A+T+KH+SRFILR+LP+EV+CY S EEISRAIKPL+E+ FP+E
Sbjct: 248 DGDPSPKEIVQHAMTSAAATKKHMSRFILRLLPIEVSCYPSEEEISRAIKPLVEQYFPIE 307

Query: 312 SQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGV 371
           +++P+KFAVLY AR+NTG+DR  IINT+AK++P PHKVDL+NPE TIVVEI+KT+CLIGV
Sbjct: 308 TENPRKFAVLYGARANTGLDRMKIINTIAKSIPAPHKVDLSNPEMTIVVEIIKTVCLIGV 367

Query: 372 VEKYKELSKYNLRQLTS 385
           VEKYKEL+KYNLRQLTS
Sbjct: 368 VEKYKELAKYNLRQLTS 374

[Close]

BLAST of Carg25439 vs. Swiss-Prot
Match: sp|Q9VZD8|THUM1_DROME (THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG15014 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-20
Identity = 59/169 (34.91%), Postives = 100/169 (59.17%), Query Frame = 0


Query: 219 QELGDKSKRRFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRV 278
           +E+  + K RF N+D+     VFI+ +  D    P A+ +H++  IA+T K +SRF+LR+
Sbjct: 114 REMLSQRKMRFQNVDTNTTNCVFIRTQLED----PVALGKHIINDIATTGKSMSRFVLRL 173

Query: 279 LPVEVACYASVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKA 338
           +P+EV C A++ +I  A   L +K+F  E   P  + +++  R N  I R  II  +A+ 
Sbjct: 174 VPIEVVCRANMPDIITAAGELFDKHFLKE---PTSYGIIFNHRYNQQIKRDQIITQLAEL 233

Query: 339 VPEP---HKVDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQLTS 385
           V      +KVDL   +K+I+VE+++  CL+ V++ Y E  K+NL +L +
Sbjct: 234 VNSKNVGNKVDLKEAKKSIIVEVLRGWCLLSVIDNYLECKKFNLAELAN 275

[Close]

BLAST of Carg25439 vs. Swiss-Prot
Match: sp|Q24K03|THUM1_BOVIN (THUMP domain-containing protein 1 OS=Bos taurus OX=9913 GN=THUMPD1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-18
Identity = 71/223 (31.84%), Postives = 119/223 (53.36%), Query Frame = 0


Query: 170 NEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAEL-QELGD----- 229
           N  + KC E     + E     +  E  A K       +  D  +EA L +E+GD     
Sbjct: 51  NMNERKCVEEAYSLLNEYGDDMYGPEKFADKDQQPSGSEGEDDDVEAALKKEVGDIKAST 110

Query: 230 -KSKRRFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVE 289
               RRF +++SG N VVFI+    +    PE +V H++  I  T+K  +R ILR+LP+ 
Sbjct: 111 EMRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDIYKTKKKKTRVILRMLPIS 170

Query: 290 VACYASVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAV--- 349
             C A +E++ +  +  +E  F   ++    F ++Y++R+N+ ++R  +I  +A  V   
Sbjct: 171 GTCKAFLEDMKKYAETFLEPWFKAPNKG--TFQIVYKSRNNSHMNREEVIKELAGIVGSL 230

Query: 350 PEPHKVDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQL 383
              +KVDL+NP+ T+VVEI+K +C + VV+ Y    KYNL+++
Sbjct: 231 NSENKVDLSNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEV 267

[Close]

BLAST of Carg25439 vs. Swiss-Prot
Match: sp|Q9NXG2|THUM1_HUMAN (THUMP domain-containing protein 1 OS=Homo sapiens OX=9606 GN=THUMPD1 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-17
Identity = 66/218 (30.28%), Postives = 121/218 (55.50%), Query Frame = 0


Query: 168 NDNEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKR 227
           N+   D+  PE  +++ ++P   +   E D +++ +K++   I    E  L        R
Sbjct: 66  NEYGDDMYGPEKFTDKDQQPSGSEG--EDDDAEAALKKEVGDIKASTEMRL--------R 125

Query: 228 RFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYA 287
           RF +++SG N VVFI+    +    PE +V H++  +  T+K  +R ILR+LP+   C A
Sbjct: 126 RFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKA 185

Query: 288 SVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAV---PEPHK 347
            +E++ +  +  +E  F   ++    F ++Y++R+N+ ++R  +I  +A  V      +K
Sbjct: 186 FLEDMKKYAETFLEPWFKAPNKG--TFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENK 245

Query: 348 VDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQL 383
           VDL NP+ T+VVEI+K +C + VV+ Y    KYNL+++
Sbjct: 246 VDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEV 267

[Close]

BLAST of Carg25439 vs. Swiss-Prot
Match: sp|Q99J36|THUM1_MOUSE (THUMP domain-containing protein 1 OS=Mus musculus OX=10090 GN=Thumpd1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-17
Identity = 71/223 (31.84%), Postives = 117/223 (52.47%), Query Frame = 0


Query: 170 NEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAEL-QELGD----- 229
           N  + KC E     + E     +  E    K       +  D   EA L +E+GD     
Sbjct: 51  NMNERKCVEEAYSLLNEYGDDMYGPEKFIDKDQQPSGSEGEDDDAEAALKKEVGDIKAST 110

Query: 230 -KSKRRFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVE 289
            K  RRF +++SG N VVFI+    +    PE +V H++  +  T+K  +R ILR+LP+ 
Sbjct: 111 EKRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKTKKKKTRVILRMLPIS 170

Query: 290 VACYASVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAV--- 349
             C A +E++ +  +  +E  F   ++    F ++Y++R+N+ ++R  +I  +A  V   
Sbjct: 171 GTCKAFLEDMKKYAETFLEPWFKAPNKG--TFQIVYKSRNNSHMNREEVIKELAGIVGSL 230

Query: 350 PEPHKVDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQL 383
              +KVDL NPE T+VVEI+K +C + VV+ Y    KYNL+++
Sbjct: 231 NSENKVDLTNPEYTVVVEIIKAVCCLSVVKDYVLFRKYNLQEV 267

[Close]

BLAST of Carg25439 vs. Swiss-Prot
Match: sp|P87151|YB0A_SCHPO (Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC25H2.10c PE=4 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 6.2e-11
Identity = 51/191 (26.70%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 195 EADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFN---LDSGCNGVVFIQMRKNDGEP 254
           E  +S    +E+ + ++  +  E+  L  K+K+       LD  C  V F++ R     P
Sbjct: 69  ETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTPIMLDMPC--VYFVKTR-----P 128

Query: 255 GPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVESQSP 314
             + V     T      K ++R+  R++P+      S++++    K LI+  F    +  
Sbjct: 129 PIDPVRLVEFTCEVGKTKKMTRYTQRLIPIVRTTGVSLDDLEELAKSLIDPLFHEGQEGI 188

Query: 315 KKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGVVEKY 374
           K+FAV    R++T + +  I  TVA+ V + H VDL N +  I+V+++K I  I +V+ +
Sbjct: 189 KEFAVQANIRNHTVLKKDDIYRTVARIVGKQHMVDLKNFKLLILVQVIKNIIGISIVQNF 248

Query: 375 KELSKYNLRQL 383
           +EL ++NL ++
Sbjct: 249 EELRRFNLNEV 252

[Close]

BLAST of Carg25439 vs. TrEMBL
Match: tr|A0A1S3BP64|A0A1S3BP64_CUCME (LOW QUALITY PROTEIN: THUMP domain-containing protein 1 homolog OS=Cucumis melo OX=3656 GN=LOC103492015 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 7.3e-142
Identity = 315/387 (81.40%), Postives = 329/387 (85.01%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAA+NKPS  GKKRKQR+ P+NKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAADNKPSAGGKKRKQRFLPHNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DSFFDE  HGK  GVKLTELADKPLNKKIKF        XXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DSFFDELAHGKNCGVKLTELADKPLNKKIKF-----SDSXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           XXXXXXXXXXXXXXX                                      +KCPEVP
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPP KKHC+EADASKS +KEKEKSIDQLIEAELQELGDK+KRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPNKKHCVEADASKSNIKEKEKSIDQLIEAELQELGDKTKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGP+AVVQHMMTSIASTRKHISRFILR+LP+EVACYASVEEI+RAIKPLI
Sbjct: 241 FIQMRKNDGEPGPKAVVQHMMTSIASTRKHISRFILRILPIEVACYASVEEITRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFP+ESQ+  KFAVLYEAR+NTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPIESQNAVKFAVLYEARANTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKE SKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKEFSKYNLRQLTSRKQ 382

[Close]

BLAST of Carg25439 vs. TrEMBL
Match: tr|A0A2P5FTJ4|A0A2P5FTJ4_9ROSA (THUMP domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_028650 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 6.4e-114
Identity = 272/394 (69.04%), Postives = 321/394 (81.47%), Query Frame = 0


Query: 1   MAAENKP------STAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASI 60
           MA++NKP      +T  KK +QRY P+NKPVKKKG YPLRPGVQGFFITCDGGRERQAS 
Sbjct: 1   MASQNKPKSDSHNNTKSKKGRQRYLPHNKPVKKKGSYPLRPGVQGFFITCDGGRERQASH 60

Query: 61  EAINVIDSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXX 120
           EAINVIDSF++E V GK SGVKL EL  KPLNKKIKF       XXXXXXXXXXXXXXXX
Sbjct: 61  EAINVIDSFYEELVLGKDSGVKLGELPGKPLNKKIKF-------XXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDI 180
           XXXXXXXXXXXXXXXXXXXXX ++     +T +  D  + ++ + E+  E + ND  K  
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXDNTRKGKETGETLDHDKIEVKSPENGKEGEPNDC-KVS 180

Query: 181 KCPEVPSEEVEEPPKKKHCIEADASKSIVKEK--EKSIDQLIEAELQELGDKSKRRFFNL 240
           K  E  + E EEPP KK C+E D S+  V +K  EKSID+LIEAEL+ELGDK+KRRFF+L
Sbjct: 181 KSNEKRANEAEEPPAKKQCLETDVSECAVPDKVEEKSIDKLIEAELKELGDKNKRRFFHL 240

Query: 241 DSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEI 300
           D+GCNGVVF+QMRK DG+PGP+ +VQH+MTS A+T+KH+SRFILR+LPVE+ACYAS EEI
Sbjct: 241 DTGCNGVVFVQMRKRDGDPGPKDIVQHIMTSAAATKKHMSRFILRILPVELACYASEEEI 300

Query: 301 SRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEK 360
           S+AI PL+EK FPVE+Q+P+KFAVLY AR+NTGIDR  II+TVAK+VP+PHKVDLNNP+K
Sbjct: 301 SKAIVPLVEKYFPVEAQNPQKFAVLYGARANTGIDRMKIIDTVAKSVPKPHKVDLNNPDK 360

Query: 361 TIVVEIVKTICLIGVVEKYKELSKYNLRQLTSRK 387
            IVVEIVKT+CLIGV+EKYKEL+KYNLRQLTS K
Sbjct: 361 AIVVEIVKTVCLIGVIEKYKELAKYNLRQLTSSK 386

[Close]

BLAST of Carg25439 vs. TrEMBL
Match: tr|A0A067JRH7|A0A067JRH7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25960 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.4e-113
Identity = 265/395 (67.09%), Postives = 305/395 (77.22%), Query Frame = 0


Query: 1   MAAENKPSTA-------GKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQAS 60
           MA  N P +A       GKKRKQRY P+NKPVKKKG YPL PGVQGFFITCDGGRERQAS
Sbjct: 1   MATVNNPKSAATANVNKGKKRKQRYLPHNKPVKKKGAYPLHPGVQGFFITCDGGRERQAS 60

Query: 61  IEAINVIDSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXX 120
            EAINVIDSF++E VHGK + V L EL +KPLNKKIKF   XXXXXXXXXXXXXXXXXXX
Sbjct: 61  HEAINVIDSFYEELVHGKDTSVDLAELPNKPLNKKIKFVYSXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKD 180
           XXXXXXXXXXXX             P NE  +    +   G      ++ EEK+ D+E  
Sbjct: 121 XXXXXXXXXXXXSDVNQNSDAKSEVPTNEKLSFPNVENTCG-----ANQREEKTKDSEDS 180

Query: 181 IKCPEVPSEEVEEPPKKKHCIEADASKSIVKEK--EKSIDQLIEAELQELGDKSKRRFFN 240
               E P+ E +EPP KK C++   SKS + EK  EKS+D+LIE EL+ELGDKSKRRF N
Sbjct: 181 GNDLENPTSEAKEPPAKKQCLDTCVSKSTIHEKMEEKSVDKLIEDELKELGDKSKRRFAN 240

Query: 241 LDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEE 300
           LDSGCNGVVF+QMRK DG+P P+ +VQHMMT  ASTRKH+SRFILRVLPVEVACYAS EE
Sbjct: 241 LDSGCNGVVFVQMRKRDGDPSPKDIVQHMMTFAASTRKHMSRFILRVLPVEVACYASEEE 300

Query: 301 ISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPE 360
           IS+A+  ++ K FPV++Q P+KFAVLYEAR+NTGIDR  IIN+VAK+VP PHKVDL+NPE
Sbjct: 301 ISKAMASIVAKYFPVDAQDPQKFAVLYEARANTGIDRMKIINSVAKSVPGPHKVDLSNPE 360

Query: 361 KTIVVEIVKTICLIGVVEKYKELSKYNLRQLTSRK 387
           KTIVVE+VKT+CLIGVVEKYKEL+KYN+RQLTS K
Sbjct: 361 KTIVVEVVKTVCLIGVVEKYKELAKYNMRQLTSPK 390

[Close]

BLAST of Carg25439 vs. TrEMBL
Match: tr|A0A0D2NRD3|A0A0D2NRD3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G126000 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.2e-113
Identity = 266/392 (67.86%), Postives = 301/392 (76.79%), Query Frame = 0


Query: 1   MAAEN--KPSTA---GKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIE 60
           MA EN  KP T    GKKRKQ Y P+NK VKKKG YPLRPGVQGFFITCDGGRERQA+ E
Sbjct: 1   MATENKAKPGTVTNKGKKRKQ-YLPHNKAVKKKGAYPLRPGVQGFFITCDGGRERQAAHE 60

Query: 61  AINVIDSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXXX 120
           A++VIDSFF+E V+GK  G +   L +KPLNKKI F            XXXXXXXXXXXX
Sbjct: 61  ALDVIDSFFEELVNGKDLGEESAVLPNKPLNKKITF-----------SXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIK 180
           XXXXXXXXXXXX        + D   E+ T    D    D V     TEE S DN+K+  
Sbjct: 121 XXXXXXXXXXXXVIKSNASKEIDASQESLTNKDLDLPNSDDVCHGKVTEENS-DNQKNGA 180

Query: 181 CPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSG 240
             E  ++ +EEPP KK C+E D SKS   EKEKSID+LIEAEL ELGDKSKR FFNLDSG
Sbjct: 181 NIENQADNLEEPPAKKQCLETDTSKSATNEKEKSIDKLIEAELNELGDKSKRLFFNLDSG 240

Query: 241 CNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRA 300
           CNGVVF+QMRK DG P P+ +VQHMMTS ASTRKH+SRFILRVLPVEVACY+S EEI+RA
Sbjct: 241 CNGVVFVQMRKRDGVPSPKDIVQHMMTSAASTRKHMSRFILRVLPVEVACYSSEEEITRA 300

Query: 301 IKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIV 360
           +KPLIE+ FPVE+Q+P+KFAVLYEAR+N+GIDR  IIN+VAK+VP PHKVDL+NP+ TIV
Sbjct: 301 MKPLIEQYFPVETQNPRKFAVLYEARANSGIDRMKIINSVAKSVPAPHKVDLSNPDMTIV 360

Query: 361 VEIVKTICLIGVVEKYKELSKYNLRQLTSRKQ 388
           VEIVKTICLIGVVEKYKEL+KYNLRQLTS KQ
Sbjct: 361 VEIVKTICLIGVVEKYKELAKYNLRQLTSPKQ 379

[Close]

BLAST of Carg25439 vs. TrEMBL
Match: tr|A0A2P5B0A1|A0A2P5B0A1_PARAD (THUMP domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283820 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.2e-113
Identity = 267/394 (67.77%), Postives = 322/394 (81.73%), Query Frame = 0


Query: 1   MAAENKP------STAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASI 60
           MA++NKP      +T  KK +QRY P+NKPVKKKG YPLRPGVQGFFITCDGGRERQAS 
Sbjct: 1   MASQNKPMSDSHNNTKSKKGRQRYLPHNKPVKKKGSYPLRPGVQGFFITCDGGRERQASH 60

Query: 61  EAINVIDSFFDEFVHGKGSGVKLTELADKPLNKKIKFXXXXXXXXXXXXXXXXXXXXXXX 120
           EAINVIDSF++E V GK SGVKL EL  KPLNKKIK         XXXXXXXXXXXXXXX
Sbjct: 61  EAINVIDSFYEELVLGKNSGVKLGELPSKPLNKKIK---------XXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDI 180
           XXXXXXXXXXXXXXXXXXXXX+++  N  +T +  D  + ++ + E+  E + ND ++  
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXEDNTRNGKETGETLDHDKIEVKSPENGKEGEPNDCKEVS 180

Query: 181 KCPEVPSEEVEEPPKKKHCIEADASKSIVKEK--EKSIDQLIEAELQELGDKSKRRFFNL 240
           K  E  ++E EEPP KK C+E D S+  V +K  EKSID+LIEAEL+ELGDK+KRRFF+L
Sbjct: 181 KSNEKHADEAEEPPAKKQCLETDVSECAVPDKVEEKSIDKLIEAELKELGDKNKRRFFHL 240

Query: 241 DSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEI 300
           D+GCNGVVF+QMRK +G+PGP+ +VQ++MTS A+TRKH+SRFILR+LPVE+ACYAS EEI
Sbjct: 241 DTGCNGVVFVQMRKREGDPGPKDIVQNVMTSAAATRKHMSRFILRILPVELACYASEEEI 300

Query: 301 SRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEK 360
           S+AI PL+EK FPVE+++P+KFAVLY AR+NTGIDR  II+TVAK+VP+ HKVDLNNP+K
Sbjct: 301 SKAIVPLVEKYFPVEAENPQKFAVLYGARANTGIDRMKIIDTVAKSVPKLHKVDLNNPDK 360

Query: 361 TIVVEIVKTICLIGVVEKYKELSKYNLRQLTSRK 387
            IVVEIVKT+CLIGV+EKYKEL+KYNLRQLTS K
Sbjct: 361 AIVVEIVKTVCLIGVIEKYKELAKYNLRQLTSSK 385

The following BLAST results are available for this feature:

BLAST of Carg25439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531982.1	2.0e-183	100.00	THUMP domain-containing protein 1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022930547.1	6.4e-174	96.64	THUMP domain-containing protein 1 homolog [Cucurbita moschata]	[more]
XP_022967605.1	3.2e-173	96.64	THUMP domain-containing protein 1 homolog [Cucurbita maxima]	[more]
XP_022154313.1	4.6e-148	83.46	THUMP domain-containing protein 1 [Momordica charantia]	[more]
XP_008450398.1	1.1e-141	81.40	PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein 1 homolog [Cucum...	[more]

BLAST of Carg25439 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12410.1	3.7e-99	61.54	THUMP domain-containing protein	[more]

BLAST of Carg25439 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9VZD8\|THUM1_DROME	1.9e-20	34.91	THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=...	[more]
sp\|Q24K03\|THUM1_BOVIN	4.0e-18	31.84	THUMP domain-containing protein 1 OS=Bos taurus OX=9913 GN=THUMPD1 PE=2 SV=1	[more]
sp\|Q9NXG2\|THUM1_HUMAN	1.5e-17	30.28	THUMP domain-containing protein 1 OS=Homo sapiens OX=9606 GN=THUMPD1 PE=1 SV=2	[more]
sp\|Q99J36\|THUM1_MOUSE	1.5e-17	31.84	THUMP domain-containing protein 1 OS=Mus musculus OX=10090 GN=Thumpd1 PE=1 SV=1	[more]
sp\|P87151\|YB0A_SCHPO	6.2e-11	26.70	Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Carg25439 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BP64\|A0A1S3BP64_CUCME	7.3e-142	81.40	LOW QUALITY PROTEIN: THUMP domain-containing protein 1 homolog OS=Cucumis melo O...	[more]
tr\|A0A2P5FTJ4\|A0A2P5FTJ4_9ROSA	6.4e-114	69.04	THUMP domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_02865...	[more]
tr\|A0A067JRH7\|A0A067JRH7_JATCU	2.4e-113	67.09	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25960 PE=4 SV=1	[more]
tr\|A0A0D2NRD3\|A0A0D2NRD3_GOSRA	4.2e-113	67.86	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G126000 PE=4 ...	[more]
tr\|A0A2P5B0A1\|A0A2P5B0A1_PARAD	4.2e-113	67.77	THUMP domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_2...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR004114	THUMP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25439-RA	Carg25439-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004114	THUMP domain	SMART	SM00981	THUMP_a_2	coord: 277..369 e-value: 4.4E-9 score: 46.2
IPR004114	THUMP domain	PFAM	PF02926	THUMP	coord: 268..368 e-value: 4.0E-16 score: 59.3
IPR004114	THUMP domain	PROSITE	PS51165	THUMP	coord: 263..369 score: 21.409
None	No IPR available	GENE3D	G3DSA:3.30.2300.10		coord: 286..370 e-value: 1.6E-25 score: 91.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..191
None	No IPR available	PANTHER	PTHR13452	THUMP DOMAIN CONTAINING PROTEIN 1-RELATED	coord: 6..386
None	No IPR available	PANTHER	PTHR13452:SF10	THUMP DOMAIN-CONTAINING PROTEIN 1	coord: 6..386
None	No IPR available	CDD	cd11717	THUMP_THUMPD1_like	coord: 227..369 e-value: 6.34434E-44 score: 150.427
None	No IPR available	SUPERFAMILY	SSF143437	THUMP domain-like	coord: 287..368

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25439	Cla006318	Watermelon (97103) v1	carwmB0421
Carg25439	MELO3C015170	Melon (DHL92) v3.5.1	carmeB0432
Carg25439	ClCG03G013060	Watermelon (Charleston Gray)	carwcgB0417
Carg25439	CSPI01G30540	Wild cucumber (PI 183967)	carcpiB0462
Carg25439	CmaCh11G008580	Cucurbita maxima (Rimu)	carcmaB0590
Carg25439	CmoCh11G008680	Cucurbita moschata (Rifu)	carcmoB0575
Carg25439	Lsi06G005400	Bottle gourd (USVL1VR-Ls)	carlsiB385
Carg25439	Cp4.1LG04g12220	Cucurbita pepo (Zucchini)	carcpeB0596
Carg25439	CsGy1G029870	Cucumber (Gy14) v2	carcgybB0433
Carg25439	MELO3C029487.2	Melon (DHL92) v3.6.1	carmedB0434
Carg25439	CsaV3_1G043000	Cucumber (Chinese Long) v3	carcucB0458
Carg25439	Cla97C03G063280	Watermelon (97103) v2	carwmbB0448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25439	Silver-seed gourd	carcarB439
Carg25439	Cucurbita maxima (Rimu)	carcmaB0589
Carg25439	Cucurbita moschata (Rifu)	carcmoB0574
Carg25439	Cucurbita pepo (Zucchini)	carcpeB0595
Carg25439	Cucumber (Chinese Long) v2	carcuB0457
Carg25439	Wax gourd	carwgoB0510