Carg25435 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25435
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nuclear cap-binding protein subunit 1
Location	Cucurbita_argyrosperma_scaffold_300 : 101207 .. 105991 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGCATCTTCGCTTTTACAGTCCCGTGTGTTGATTCGAACCCACTTCCCCATCTCCTCATTTTCCCTCTACGACCTTTTTTTTTTCTTCTTCTGGGTAGTAATGAGCAGCTGGAAGAGTCTTCTTCTTCGAATTGGCGACAAGTCCCCGGAATATGGCACCTCCTCCGACTTCAAAGACCATATTGTTCGTCTCTCTCTCTCTATATTCCTCCATTTGTACGCCGGTATTCGACTTCTGGCTGTTGATTTTCATCTGGGTTTTGCAGGAAACTTGCTTTGGTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAGTTTTGCCTGTAATTCTTTGCTTCTGCACACTCTTTGCTCTTTAATTTATCTGGGTCTTCATGATCAAATTTGCAGTCTTTGTATTGGATGAAATTGTACTGGTTGAATTACTATATCTGCAGCACGTGTGCTCTGTAATTTATCTGGGTCTTGATGAAATTTGCAGTCCTTGTATTGGGTGAAATTATACTGGTTGAATCACTATATCAGCAGCACGTGTGAACTGAGTTATTTTTTTTTTTGCTGGCAACTTATTTAGTTGTATCCCTTCGTGGCACATTGAGTCGTGTCTAATTACTCTATGCTTGTGGTATTTACGCTGTTTTCTTTTTTCTCATCTGCAGTTCCTTCTACAATGCGTTGAACAATTGCCTCATAAGACTCCTTTGTACGGGACATTGGTAAAGTACATTACATTCTTCATACCTACTGTGGATATCTTTTCTTAAAACTTCTGTCTTGCAATGATGTGCTTATGTTGCTATCTCGTGTGATTTAGCTTCAACTTCTTAGTTATGTCTCACATGTATAGTACTGTACAGCATTATAAATCTTATTTATCAAGTCCCTAACGGACGATCGGCTTGTCTTTGAGCATGATAAAGAGCTTCGTGCCGACTAGTTGCTAATAAACTTTTTAGCCTCATATGAGAATGGAAAACTAGAGCATTTTCTGCATCTAATTTCTGGTTGACCATGTTCCTAGAAAAGGATACTTTCGAGAAAGGACAAGCACGACTGAATTAGCTATACATACAAATCTATTCTAAACGTTTCCCATGAAAAGACAAAGCTTTAGATTCAAAGTTATGAAATGCAGTGGCCTTCCTTTTGCTATTTCCTTTTCTGTTCTTCTTCATGTATCGTTTATAACTCTAGAGCTACGTGGTCGGGCATTTCCTCTTTTTCCTGTAGTGTATTATTTGATTCAACAAAATAGTATGTTTCCTTCAGGAAAAGACAAACCTTCTTTCTTTTTCCCTAGTTTGGTTTGTTGCTTTGGCTCCCTCTTCCCTTTGTATATTCTTTCACAAGTGGAATGGTTTTTCATACCCTTGTTTCCTTTATACTCCCTTTGATTCCGTTATACTCTCACTCCAACTGGTAAACACGGTCTCTCTTCCTTTCTTTCTCTCTTTTTTGCTTTAATGTTTACTTATAATTTTCAATGATGGTTATATATCTATCTTGTTGTGCATACAGATTGGGTTAATAAACTTGGAAAATGAAGACTTCGTGAAGAAAATTGTGGACCAAACTCACAAAAGTTTTCAGGTTAGCGATTTTGCGGATCACATGGTTTAGATGTTTTCATTTCTTGTGCCGTTCGAACTTTCTGCCGAGTTGCTTCCTTTCTGAACTTCTCCTATGACCCCAACCACAAATCCTCACAAATTCAATCCAATTGCCTCAAGGGGATAAGTGTCTTGATGCCTTCAAAGTGAGAGGCGAGAAAGACACATTGTCATTGTCTTAGTGAAGTGAATTAAGGCACTTCCATACACAAAAATAAAAAAGAAACGAGTAAATTATATATTTAGTTCTTGAACTTTTAAAGTCGTGTAGATTTTCATTTTTGTAGCTAATAGGTTGGAATTTTCAATTTTGTGCCTAATAAGTTCTTGGCCTATTCAATATTTTTTTGGGTAGTAAACAACTTTATTCATTAAATAAAATGCTGCACGATGAGGAGATCACCAATAAAAAAAAATCCTACGAATCACCTTGACAACCAAATATAGTAGCGTCAGATAGTTGAAGTGTTTGCAAGCTGGCGTGAACACTCATAGATATTAAAAAGTGTATGGTGCGATCAAGGACAAGTATCTTCGTTCTGCGATTACTCTTCTGTTAGTGCGCCAATTGTAAAAGATGGTGTACTTATAGCCTGGCCTTGATTGTTAGAAATTGGAAGGTTTTACTTTGTGATAGTTCTTTTGTTTGGGAAGGGGTTCTCCCCCTACCCCTTTCCCTCAACTTGTTTTCCTTTTGCTGATATGAATACAAATCTTGCTGTTTCATATAAAAGAAAAAAAGTTTTCGGGATGTTCGACTCCCATCCTTAGTATTCGAATTTCAATTATTTCATCAGATATACTTCGTTTATCTTACTCGTAGTTCTTTTTCAGGATGCCTTAAACACTGGAAATTGCCACGGGATTCGAATTTTGTTACGCTTTCTAACTACCCTGGTATGCTTGATTTTGCTATTAACAATACATTGTTTTTGACCGAGATATTATCATTGTTTAAATTTGAAAACTTAACGTATTATAGTTTTTTTCTGTCATCTTAAAAAAATATTCTGACCTTTTAAATGGGTTCATTGTTTTTTGTCTTATGTAGATGAGCAGTAAAGTCCTGCTGTCCACTTCTCTAGTTGTTGTTTTTGAAACATTATTATCTTCAGCTGCCACAACAGTGGATGAAGAGAAGGGAAACCCTGCATGGCAGGCACGCGCTGACTTTTACATATCTTGCATTCTCTCCTGTTTTCCCTGGGGAGGAGCTGAACTGGTTGAGGTATTGTTGTTTTGTCTCTGAATTTGGTTCTTCCTGTGATTGCTCTAAAAGAATTATTTAAATACTCTACTATTTTTAGAATGTTACAACAACACGTGGGATGAGGATTTCAAACCTACGAACTTGTTTTTAATTGCTGAGCTATACTCATGTTGGCCAAAGAGCCTCTTTCATTGAAAACTCATCTTCGTGCGCAGCAAGTTCCTGAAGAGCTCGAGAGAGTAATGGTTGGAGTAGAAGCTTACTTAAGCATTCGAAGGCATACCGTGGACACTGGTTTATCCTTTTTTGAGGATGCTGGTGAAGTTGAGAAAACTCTTAATGAGAAGGTATAATTTCACTAGTTGCGATAATTCTTTATCATAATTCTAAACTTTTCTACTTGATTGGGAATCCGTTTCGGGTTGACTGTTTTTTCAATATATATACGGCAATGCCGTTAGTTATAAATGTCATGGTGTCGAATCTGTTATGTCACTAGAAAAACCTATGTTATTTCAGTTGGAGATTCTGCCTTATGATTGGAACTGAACACAGTTAGTATGATAATGATTTTGTTTTTAGAAGTTAAGCTTGTTTACTAGGGGTTTCTTTGTTTTCTTATCTATATTTTATCGACTGGCTCAGGATTAACACTGCTCAACTAAATTCAACCAACAAGGCGAACTAACTATAAAGTAAAACCTGTGGCCGTAAGAAATCGTAACAAATTACTGTAAGCAACAATGAAAGAATTCTAATCATAAACCAGGCCATGTAGAAAAAGCTTCCACCTTGTCTTCCCTCCTCCCCATGCTCTCACCAGAGCTCAAAATAGATAAATTTGGTTTTATCACCTTGTTATGAAATTTGCAACATAAGTTACATTAATCCTTTTGTTTTGGTGGTCGTTTCAGGATTTTTTAGAAGATTTATGGGGACGCATACAAGCGTTATCTAGTGATGGATGGAAAGTGGATAGTGGTGATTTTCTTAAACTTTAAGCCTCAATTTGGTTATTTACTCTGGTCCTTTTATGTCCCTATATCATTATATTTTACAATGAATAAAGGGAAATTGATCCATGTATAGAACTGCTGAAAGCATATGCCATGAGGGATTGGTATAGTAGTAACTTTGAGAACCCCATTTACATCTAGAATCCATACATTTTCGTTCATATTGCTGTGAGATGCATTGGTATCTCTGAGAGTTTCTCTAAGTGGGTCTCGATCACTGAGTTGCAAGAATTTAAATTGACCCTTGATAATGTATGATAGTTCAGTATCTTCTTTGATGGAACCTTGCTATCTAGTTTCTCTGTTTGCTTGGTTTTTTTGAATTTTCTTAGCAGTAGGGATTCATCAACAATGTTATTGTTCATTAGAAACTTTTCATTGATGTAACGAAAAGAGACTAAAACTCAAAGATACAAACTCCAAAAGGAGTGAAAGAGAGTAAAAGGAAACAACAGCAAGACCGAACTAAGAAACATATAGATCAAGGACTAAATGAAAGAACCAAAACATAAACATAACCAGAGCTTTAGGATTCTCTGGTTGTGCTACACATTTCTAGATACCTATGGTATCGACGATGCAGGGAAGGGAAACTGGGTCTTGATCTCCAAATGCTTTGGAGATTCCAAGGAATGAAGTCGTACTGGAGAGATCGCCAAGGGGCACAATGGTGTATGACAAAGTATTTACAGAGAAAATATACCTATGAGTCTTAGAGGTGGGTCAGTGATGTAGAGTTTTATATTTTGTATTTTCAGTAATTGTTATATCTTCTCATGTGATAGTTCCAAGGCCCCACCTTCTATTTGAAGCTCAGCTAGTTGCTGGTAAGTCTCATGAATTTGGAAGCATCAGCTGTCCGGAGCAACCTGATTCACCTTCAACACCTTCTGGCATTACTTATGGTAAACAGAAGTATGATGCAGAGTTTAGAATCCTCTAG

mRNA sequence

TAAAGCATCTTCGCTTTTACAGTCCCGTGTGTTGATTCGAACCCACTTCCCCATCTCCTCATTTTCCCTCTACGACCTTTTTTTTTTCTTCTTCTGGGTAGTAATGAGCAGCTGGAAGAGTCTTCTTCTTCGAATTGGCGACAAGTCCCCGGAATATGGCACCTCCTCCGACTTCAAAGACCATATTGAAACTTGCTTTGGTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAGTTTTGCCTTTCCTTCTACAATGCGTTGAACAATTGCCTCATAAGACTCCTTTGTACGGGACATTGATTGGGTTAATAAACTTGGAAAATGAAGACTTCGTGAAGAAAATTGTGGACCAAACTCACAAAAGTTTTCAGGATGCCTTAAACACTGGAAATTGCCACGGGATTCGAATTTTGTTACGCTTTCTAACTACCCTGATGAGCAGTAAAGTCCTGCTGTCCACTTCTCTAGTTGTTGTTTTTGAAACATTATTATCTTCAGCTGCCACAACAGTGGATGAAGAGAAGGGAAACCCTGCATGGCAGGCACGCGCTGACTTTTACATATCTTGCATTCTCTCCTGTTTTCCCTGGGGAGGAGCTGAACTGGTTGAGCAAGTTCCTGAAGAGCTCGAGAGAGTAATGGTTGGAGTAGAAGCTTACTTAAGCATTCGAAGGCATACCGTGGACACTGGTTTATCCTTTTTTGAGGATGCTGGTGAAGTTGAGAAAACTCTTAATGAGAAGGATTTTTTAGAAGATTTATGGGGACGCATACAAGCGTTATCTAGTGATGGATGGAAAGTGGATAGTGTAATTGTTATATCTTCTCATGTGATAGTTCCAAGGCCCCACCTTCTATTTGAAGCTCAGCTAGTTGCTGGTAAGTCTCATGAATTTGGAAGCATCAGCTGTCCGGAGCAACCTGATTCACCTTCAACACCTTCTGGCATTACTTATGGTAAACAGAAGTATGATGCAGAGTTTAGAATCCTCTAG

Coding sequence (CDS)

ATGAGCAGCTGGAAGAGTCTTCTTCTTCGAATTGGCGACAAGTCCCCGGAATATGGCACCTCCTCCGACTTCAAAGACCATATTGAAACTTGCTTTGGTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAGTTTTGCCTTTCCTTCTACAATGCGTTGAACAATTGCCTCATAAGACTCCTTTGTACGGGACATTGATTGGGTTAATAAACTTGGAAAATGAAGACTTCGTGAAGAAAATTGTGGACCAAACTCACAAAAGTTTTCAGGATGCCTTAAACACTGGAAATTGCCACGGGATTCGAATTTTGTTACGCTTTCTAACTACCCTGATGAGCAGTAAAGTCCTGCTGTCCACTTCTCTAGTTGTTGTTTTTGAAACATTATTATCTTCAGCTGCCACAACAGTGGATGAAGAGAAGGGAAACCCTGCATGGCAGGCACGCGCTGACTTTTACATATCTTGCATTCTCTCCTGTTTTCCCTGGGGAGGAGCTGAACTGGTTGAGCAAGTTCCTGAAGAGCTCGAGAGAGTAATGGTTGGAGTAGAAGCTTACTTAAGCATTCGAAGGCATACCGTGGACACTGGTTTATCCTTTTTTGAGGATGCTGGTGAAGTTGAGAAAACTCTTAATGAGAAGGATTTTTTAGAAGATTTATGGGGACGCATACAAGCGTTATCTAGTGATGGATGGAAAGTGGATAGTGTAATTGTTATATCTTCTCATGTGATAGTTCCAAGGCCCCACCTTCTATTTGAAGCTCAGCTAGTTGCTGGTAAGTCTCATGAATTTGGAAGCATCAGCTGTCCGGAGCAACCTGATTCACCTTCAACACCTTCTGGCATTACTTATGGTAAACAGAAGTATGATGCAGAGTTTAGAATCCTCTAG

Protein sequence

MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHKTPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSSKVLLSTSLVVVFETLLSSAATTVDEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERVMVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIVISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAEFRIL

Homology

[Close]

BLAST of Carg25435 vs. NCBI nr
Match: XP_022931611.1 (nuclear cap-binding protein subunit 1-like [Cucurbita moschata])

HSP 1 Score: 529.3 bits (1362), Expect = 8.7e-147
Identity = 285/294 (96.94%), Postives = 285/294 (96.94%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
           TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX
Sbjct: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
           XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV
Sbjct: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDS   
Sbjct: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 295
                 VPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE
Sbjct: 241 ------VPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 285

[Close]

BLAST of Carg25435 vs. NCBI nr
Match: XP_023004357.1 (nuclear cap-binding protein subunit 1-like [Cucurbita maxima])

HSP 1 Score: 526.2 bits (1354), Expect = 7.4e-146
Identity = 284/294 (96.60%), Postives = 284/294 (96.60%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
           TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCH IRILLRFLTTLMSXXXXXX
Sbjct: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHRIRILLRFLTTLMSXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
           XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV
Sbjct: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDS   
Sbjct: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 295
                 VPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE
Sbjct: 241 ------VPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 285

[Close]

BLAST of Carg25435 vs. NCBI nr
Match: XP_023530943.1 (nuclear cap-binding protein subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 522.3 bits (1344), Expect = 1.1e-144
Identity = 282/294 (95.92%), Postives = 283/294 (96.26%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRR+LDHYGDEVLPFLLQCVEQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRDLDHYGDEVLPFLLQCVEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
           TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCH IRILLRFLTTLMSXXXXXX
Sbjct: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHRIRILLRFLTTLMSXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
           XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV
Sbjct: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDS   
Sbjct: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 295
                 VPRPHLLFEAQLVAGKSHEFGSISCPEQP SPSTPSGITYGKQKYDAE
Sbjct: 241 ------VPRPHLLFEAQLVAGKSHEFGSISCPEQPGSPSTPSGITYGKQKYDAE 285

[Close]

BLAST of Carg25435 vs. NCBI nr
Match: XP_022154329.1 (nuclear cap-binding protein subunit 1 [Momordica charantia])

HSP 1 Score: 490.0 bits (1260), Expect = 5.9e-135
Identity = 259/294 (88.10%), Postives = 269/294 (91.50%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCF AIRRELDHYGDE+LPFLLQCVEQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFAAIRRELDHYGDEILPFLLQCVEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
            PLYGTLIGL+NLENEDFVKKIV+QTH +FQDALN+GNCH IRILLRFLT +MS   XXX
Sbjct: 61  IPLYGTLIGLMNLENEDFVKKIVEQTHTNFQDALNSGNCHRIRILLRFLTAMMSSKVXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
           XXXXXXXXXXXXXXXXXX EEKGNPAWQARADFYI+CILSCFPWGGAEL+EQVPEELERV
Sbjct: 121 XXXXXXXXXXXXXXXXXXDEEKGNPAWQARADFYITCILSCFPWGGAELIEQVPEELERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRRHT DTGLSFFED GEVEKTLNEKDFLEDLWGRIQ LSSDGWKVDS   
Sbjct: 181 MVGVEAYLSIRRHTFDTGLSFFEDDGEVEKTLNEKDFLEDLWGRIQVLSSDGWKVDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 295
                 VPRPHLLFEAQLVAGKSHEFG+ISCPEQPD P T SGITYGKQK+ AE
Sbjct: 241 ------VPRPHLLFEAQLVAGKSHEFGTISCPEQPDPPLTLSGITYGKQKFTAE 285

[Close]

BLAST of Carg25435 vs. NCBI nr
Match: XP_008450385.1 (PREDICTED: nuclear cap-binding protein subunit 1 [Cucumis melo])

HSP 1 Score: 485.7 bits (1249), Expect = 1.1e-133
Identity = 249/294 (84.69%), Postives = 265/294 (90.14%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDE+LPFLLQCVEQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEILPFLLQCVEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
           TPLYGTLIGL+NLENEDFVKK+V++THKSFQDALN+G+CH IRILLRFLT LMS      
Sbjct: 61  TPLYGTLIGLMNLENEDFVKKVVEKTHKSFQDALNSGHCHKIRILLRFLTALMSSKVLLS 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
              XXXXXXXXXXXXXXX +EKGNPAWQARADFYI+CILSCFPWGGAELVEQVPEELERV
Sbjct: 121 TSLXXXXXXXXXXXXXXXDDEKGNPAWQARADFYITCILSCFPWGGAELVEQVPEELERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRR T+DTGLSFFE+ GEVEKTLNEKDFLEDLWGRIQ L++ GWKVDS   
Sbjct: 181 MVGVEAYLSIRRQTLDTGLSFFEEDGEVEKTLNEKDFLEDLWGRIQMLATGGWKVDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 295
                 VPRPHLLFEAQLVAGKSHEFG+I CPEQP+ P T SG+TYGKQKYDAE
Sbjct: 241 ------VPRPHLLFEAQLVAGKSHEFGAIKCPEQPNPPPTLSGVTYGKQKYDAE 285

[Close]

BLAST of Carg25435 vs. TAIR10
Match: AT2G13540.1 (ARM repeat superfamily protein)

HSP 1 Score: 367.9 bits (943), Expect = 6.1e-102
Identity = 177/293 (60.41%), Postives = 218/293 (74.40%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MS+WK+LLLRIG+K PEYGTSSD+KDHIETCFG IRRE++  GD+VLPFLLQC EQLPHK
Sbjct: 1   MSNWKTLLLRIGEKGPEYGTSSDYKDHIETCFGVIRREIERSGDQVLPFLLQCAEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
            PLYGTLIGL+NLENEDFV+K+V+  H +FQ AL++GNC+ IRILLRF+T+L+       
Sbjct: 61  IPLYGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRILLRFMTSLLCSKVIQP 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
                              EEKGNP+WQ +ADFY+ CILS  PWGG+EL EQVP+E+ERV
Sbjct: 121 ASLIVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSLPWGGSELAEQVPDEIERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           +VG++AYLSIR+++  +GL+FF + GE E +L EKDF+EDL  RIQ+L+S+GWK++S   
Sbjct: 181 LVGIQAYLSIRKNSSTSGLNFFHN-GEFESSLAEKDFVEDLLDRIQSLASNGWKLES--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDA 294
                 VPRPHL FEAQLVAGK HE   I C EQP  PS  S    GKQK+DA
Sbjct: 241 ------VPRPHLSFEAQLVAGKFHELRPIKCMEQPSPPSDHSRAYSGKQKHDA 283

[Close]

BLAST of Carg25435 vs. Swiss-Prot
Match: sp|Q9SIU2|NCBP1_ARATH (Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana OX=3702 GN=ABH1 PE=1 SV=2)

HSP 1 Score: 367.9 bits (943), Expect = 1.1e-100
Identity = 177/293 (60.41%), Postives = 218/293 (74.40%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MS+WK+LLLRIG+K PEYGTSSD+KDHIETCFG IRRE++  GD+VLPFLLQC EQLPHK
Sbjct: 1   MSNWKTLLLRIGEKGPEYGTSSDYKDHIETCFGVIRREIERSGDQVLPFLLQCAEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
            PLYGTLIGL+NLENEDFV+K+V+  H +FQ AL++GNC+ IRILLRF+T+L+       
Sbjct: 61  IPLYGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRILLRFMTSLLCSKVIQP 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
                              EEKGNP+WQ +ADFY+ CILS  PWGG+EL EQVP+E+ERV
Sbjct: 121 ASLIVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSLPWGGSELAEQVPDEIERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           +VG++AYLSIR+++  +GL+FF + GE E +L EKDF+EDL  RIQ+L+S+GWK++S   
Sbjct: 181 LVGIQAYLSIRKNSSTSGLNFFHN-GEFESSLAEKDFVEDLLDRIQSLASNGWKLES--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDA 294
                 VPRPHL FEAQLVAGK HE   I C EQP  PS  S    GKQK+DA
Sbjct: 241 ------VPRPHLSFEAQLVAGKFHELRPIKCMEQPSPPSDHSRAYSGKQKHDA 283

[Close]

BLAST of Carg25435 vs. Swiss-Prot
Match: sp|Q10LJ0|NCBP1_ORYSJ (Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ABH1 PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.2e-83
Identity = 157/296 (53.04%), Postives = 193/296 (65.20%), Query Frame = 0


Query: 2   SSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHKT 61
           + W++LLLRIGD+ PEYG S+D K+HIETC+G + RE +H  D +  FLLQC +QLPHK 
Sbjct: 3   AGWRTLLLRIGDRCPEYGGSADHKEHIETCYGVLCREYEHSKDAMFEFLLQCADQLPHKI 62

Query: 62  PLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXXX 121
           P +G LIGLINLENEDF K IVD TH + QDAL+  N   IRILLRFL  LM        
Sbjct: 63  PFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNENRDRIRILLRFLCGLMCSKVVLPN 122

Query: 122 XXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERVM 181
                             EE GNP+WQ RADFY+ CIL+  PWGG+EL EQVP+E ERV+
Sbjct: 123 SIIETFEALLSSAATILDEETGNPSWQPRADFYVYCILASLPWGGSELFEQVPDEFERVL 182

Query: 182 VGVEAYLSIRRHTVDTGLSFFE-DAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 241
           VG+++Y+SIRRH  D   S FE D G    + N+KDF+EDLW RIQ LS +GWKV S   
Sbjct: 183 VGIQSYISIRRHFDDIAFSVFETDEG---NSPNKKDFIEDLWERIQVLSRNGWKVKS--- 242

Query: 242 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAEFR 297
                 VP+PHL FEAQLVAG SH F  ISCP  P    + S I  G++K++A+ +
Sbjct: 243 ------VPKPHLSFEAQLVAGVSHRFSPISCP-PPTISQSSSEIVKGQEKHEADLK 285

[Close]

BLAST of Carg25435 vs. Swiss-Prot
Match: sp|Q16UN6|NCBP1_AEDAE (Nuclear cap-binding protein subunit 1 OS=Aedes aegypti OX=7159 GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.5e-25
Identity = 73/277 (26.35%), Postives = 127/277 (45.85%), Query Frame = 0


Query: 5   KSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHKTPLY 64
           ++L+LR+G+ S     SS  + ++E     +  +L ++  ++L  L +C  ++P K  +Y
Sbjct: 35  ETLILRVGENS-----SSSLESNLEGLVSVLESDLGNFRSKILRILSECPIKMPEKCTIY 94

Query: 65  GTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXXXXXX 124
            T++GL+N +N +F  + VD   K+F+++L        R  LRFL+ L++          
Sbjct: 95  STMVGLMNAKNYNFGGEFVDHMVKTFKESLKQCRWDAARYALRFLSDLVN-----CHVIS 154

Query: 125 XXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERVMVGV 184
                           E   P  Q R D+Y+  +LS  PW G EL E+    LE ++V +
Sbjct: 155 TNSLLQLLDNMVDAANEDSVP--QVRRDWYVFAVLSTLPWVGRELYEKKESALENLLVRI 214

Query: 185 EAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIVISSH 244
           E +L+ R       L  +     V+    ++++L+ LW +I+ L  D W         + 
Sbjct: 215 EVFLNKRTKKHHNSLRVW----SVDAPHPQEEYLDCLWAQIRKLRQDNW---------AE 274

Query: 245 VIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTP 282
             +PRP+L F++ L     H    I  P   DS   P
Sbjct: 275 KHIPRPYLAFDSVLCEALQHNLPLIHPPPHQDSFEYP 286

[Close]

BLAST of Carg25435 vs. Swiss-Prot
Match: sp|Q7PX35|NCBP1_ANOGA (Nuclear cap-binding protein subunit 1 OS=Anopheles gambiae OX=7165 GN=Cbp80 PE=3 SV=4)

HSP 1 Score: 113.2 bits (282), Expect = 4.9e-24
Identity = 72/277 (25.99%), Postives = 125/277 (45.13%), Query Frame = 0


Query: 5   KSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHKTPLY 64
           ++L+LR+G+ S     +S  + ++E     +  +L ++  ++L  L  C  ++P K  +Y
Sbjct: 35  ETLILRVGENS-----TSSLESNLEGLVSVLESDLGNFRSKILRILSDCPIKMPEKCTIY 94

Query: 65  GTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXXXXXX 124
            T++GL+N +N +F  + V+   K+F+D+L        R  LRFL  L++          
Sbjct: 95  STMVGLMNAKNYNFGGEFVEYMVKTFKDSLKQCQWDAARYALRFLADLVN-----CHVIS 154

Query: 125 XXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERVMVGV 184
                           E   P  Q R D+Y+  +LS  PW G EL E+    LE ++V +
Sbjct: 155 TNSLLQLLDSMVDAANEDNVP--QVRRDWYVFAVLSTLPWVGRELYEKKESALENLLVRI 214

Query: 185 EAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIVISSH 244
           E +L+ R       L  +     V+    ++++L+ LW +I+ L  D W         + 
Sbjct: 215 EVFLNKRTKKHHNALRVW----SVDAPHPQEEYLDCLWAQIRKLRQDNW---------TE 274

Query: 245 VIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTP 282
             +PRP+L F++ L     H    I  P   DS   P
Sbjct: 275 KHIPRPYLAFDSVLCEALQHNIPVIHPPPHQDSFEYP 286

[Close]

BLAST of Carg25435 vs. Swiss-Prot
Match: sp|Q6DIE2|NCBP1_XENTR (Nuclear cap-binding protein subunit 1 OS=Xenopus tropicalis OX=8364 GN=ncbp1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.1e-23
Identity = 71/277 (25.63%), Postives = 127/277 (45.85%), Query Frame = 0


Query: 5   KSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHKTPLY 64
           +SL+ R+G+KS     +S  + ++E   G +  +L +Y  ++L  L      LP K  +Y
Sbjct: 32  ESLICRVGEKS-----TSSLESNLEGLAGVLEADLPNYKSKILRILCSVARTLPEKMTVY 91

Query: 65  GTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXXXXXX 124
            TL+GL+N  N +F  + V+   +  ++ +     +    L+RFL  L++          
Sbjct: 92  TTLVGLLNARNYNFGGEFVEAMIRHLKETIKLNAYNEAVYLVRFLCDLVN-----CHVIA 151

Query: 125 XXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERVMVGV 184
                          +E+  P  Q R+D+Y+  +LS  PW G EL E+   E++R++  +
Sbjct: 152 APSMVAMFESFVGVTQEEDIP--QVRSDWYVYAVLSSLPWVGKELYEKKDVEMDRILSQI 211

Query: 185 EAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIVISSH 244
           EAYL  R+    + L  +      EK   ++++L+ LW +IQ L  D W+         H
Sbjct: 212 EAYLKQRQKLHVSILQVW----SAEKPHPQEEYLDCLWAQIQKLKKDRWQ-------ERH 271

Query: 245 VIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTP 282
           ++  RP+L F++ L     H     + P   +    P
Sbjct: 272 IL--RPYLAFDSVLCEALQHNLPPFTPPPHTEDSVYP 283

[Close]

BLAST of Carg25435 vs. TrEMBL
Match: tr|A0A1S3BQ48|A0A1S3BQ48_CUCME (nuclear cap-binding protein subunit 1 OS=Cucumis melo OX=3656 GN=LOC103492007 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 7.3e-134
Identity = 249/294 (84.69%), Postives = 265/294 (90.14%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDE+LPFLLQCVEQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEILPFLLQCVEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
           TPLYGTLIGL+NLENEDFVKK+V++THKSFQDALN+G+CH IRILLRFLT LMS      
Sbjct: 61  TPLYGTLIGLMNLENEDFVKKVVEKTHKSFQDALNSGHCHKIRILLRFLTALMSSKVLLS 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
              XXXXXXXXXXXXXXX +EKGNPAWQARADFYI+CILSCFPWGGAELVEQVPEELERV
Sbjct: 121 TSLXXXXXXXXXXXXXXXDDEKGNPAWQARADFYITCILSCFPWGGAELVEQVPEELERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRR T+DTGLSFFE+ GEVEKTLNEKDFLEDLWGRIQ L++ GWKVDS   
Sbjct: 181 MVGVEAYLSIRRQTLDTGLSFFEEDGEVEKTLNEKDFLEDLWGRIQMLATGGWKVDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 295
                 VPRPHLLFEAQLVAGKSHEFG+I CPEQP+ P T SG+TYGKQKYDAE
Sbjct: 241 ------VPRPHLLFEAQLVAGKSHEFGAIKCPEQPNPPPTLSGVTYGKQKYDAE 285

[Close]

BLAST of Carg25435 vs. TrEMBL
Match: tr|A0A0A0M082|A0A0A0M082_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616300 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 3.6e-133
Identity = 247/294 (84.01%), Postives = 263/294 (89.46%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSPEY TSSDFKDHIETCFGA+RRELDHYGDEVLPFLLQCVEQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPEYATSSDFKDHIETCFGAVRRELDHYGDEVLPFLLQCVEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
           TPLYGTLIGL+NLENEDFVKK+V++TH+SFQDALN+G+CH IR+LLRFLT LMS      
Sbjct: 61  TPLYGTLIGLMNLENEDFVKKVVEKTHESFQDALNSGDCHKIRVLLRFLTALMSSKVLLS 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
              XXXXXXXXXXXXXX  +EKGNPAWQARADFYI+CILSCFPWGGAELVEQVPEELERV
Sbjct: 121 TSLXXXXXXXXXXXXXXVDDEKGNPAWQARADFYITCILSCFPWGGAELVEQVPEELERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRR T+DTGLSFFED GEVEKTLNEKDFLEDLWGRIQ L++ GWKVDS   
Sbjct: 181 MVGVEAYLSIRRQTLDTGLSFFEDDGEVEKTLNEKDFLEDLWGRIQMLATGGWKVDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAE 295
                 VPRPHLLFEAQLVAGKSHEFG+I CPEQP+ P T SGITYGKQKYDAE
Sbjct: 241 ------VPRPHLLFEAQLVAGKSHEFGAIKCPEQPNPPPTLSGITYGKQKYDAE 285

[Close]

BLAST of Carg25435 vs. TrEMBL
Match: tr|A0A2P5FIP4|A0A2P5FIP4_9ROSA (Nuclear cap-binding protein subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_065790 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 9.3e-113
Identity = 201/296 (67.91%), Postives = 226/296 (76.35%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSWKSLLLRIGDKSP+Y TSSDFKDHIETC G +RREL+H  +++L FLLQC EQLPHK
Sbjct: 1   MSSWKSLLLRIGDKSPDYPTSSDFKDHIETCSGVLRRELEHSSNDILAFLLQCAEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
            PLYGTLIGL+NLENEDF +K+V+ T  +FQDAL +GNC+ IRILLRFLT +M       
Sbjct: 61  IPLYGTLIGLMNLENEDFGRKMVESTQANFQDALYSGNCNRIRILLRFLTVMMCSKVLQP 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
                              EEKGNP+WQARADFYI CILSC PWGGAEL EQVPEE+ERV
Sbjct: 121 SSLVVVFETLLSSAATTVDEEKGNPSWQARADFYIICILSCLPWGGAELSEQVPEEIERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVG+EAYLSIRRH  + GLSFFED  E EK  ++KDFLEDLW RIQ LSS+GWK+DS   
Sbjct: 181 MVGIEAYLSIRRHNSEAGLSFFEDDDESEKANSDKDFLEDLWDRIQVLSSNGWKLDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAEFR 297
                 VPRPHL FEAQLVAGKSHE G ISCP+QPD PST SG +YGKQK+DAE R
Sbjct: 241 ------VPRPHLSFEAQLVAGKSHELGPISCPDQPDPPSTTSGASYGKQKHDAELR 287

[Close]

BLAST of Carg25435 vs. TrEMBL
Match: tr|D7T129|D7T129_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g03810 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 4.6e-112
Identity = 195/296 (65.88%), Postives = 228/296 (77.03%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSW+++LLRIGDK PEY  +SD K+HIETC+G +RREL+HYG+++LPFLLQC EQLPHK
Sbjct: 1   MSSWRTILLRIGDKCPEYNGNSDSKEHIETCYGVLRRELEHYGNDILPFLLQCAEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
            PLYGT++GL+NLENE+FVKK+V+    + Q AL++GNC+ IRIL+RFLT +M       
Sbjct: 61  IPLYGTVVGLLNLENEEFVKKVVENCQNNLQGALDSGNCNRIRILMRFLTVMMCSKVIQP 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
                              EEKGNP+WQA ADFYI+CILSC PWGGAELVEQVPEE+ERV
Sbjct: 121 GPLVVVFETLLSSAATTVDEEKGNPSWQACADFYITCILSCLPWGGAELVEQVPEEIERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVIV 240
           MVGVEAYLSIRRH  D GLSFFED  E EK  +EKDFLEDLWGRIQ LSS+GWK+DS   
Sbjct: 181 MVGVEAYLSIRRHISDIGLSFFEDDDETEKNPDEKDFLEDLWGRIQVLSSNGWKLDS--- 240

Query: 241 ISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAEFR 297
                 VPRPHL FEAQLVAGKSH+FG +SCPE PD PST SGIT GKQK+DAE +
Sbjct: 241 ------VPRPHLSFEAQLVAGKSHDFGPLSCPELPDPPSTLSGITCGKQKHDAELK 287

[Close]

BLAST of Carg25435 vs. TrEMBL
Match: tr|A0A0D2W9D3|A0A0D2W9D3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G252000 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 6.0e-112
Identity = 203/299 (67.89%), Postives = 228/299 (76.25%), Query Frame = 0


Query: 1   MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK 60
           MSSW++LLLRIGDKS EY +SSDFKDHIETCFGA+RREL H   E+L FLLQC EQLPHK
Sbjct: 1   MSSWRNLLLRIGDKSSEYSSSSDFKDHIETCFGALRRELGHSSAEILSFLLQCAEQLPHK 60

Query: 61  TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSXXXXXX 120
            PLYGTLIGL+NLE+EDFVKKIV+ T  SFQDAL++GNC GIRIL+RFLT LM       
Sbjct: 61  IPLYGTLIGLLNLEDEDFVKKIVENTQNSFQDALDSGNCDGIRILMRFLTALMCSKVLQP 120

Query: 121 XXXXXXXXXXXXXXXXXXXEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV 180
                              EEKGNP+WQARADFY+ CILSC PWGGAEL EQVPEE+ERV
Sbjct: 121 TSLVVVFETLLSSAAITVDEEKGNPSWQARADFYVICILSCLPWGGAELAEQVPEEIERV 180

Query: 181 MVGVEAYLSIRRHTVDTGLSFFED---AGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDS 240
           +VG++AYLSIRRHT D+GLSFFED    G+V     EKDFLEDLW RIQ LSS+GWKV+S
Sbjct: 181 LVGIQAYLSIRRHTSDSGLSFFEDEESGGDV-----EKDFLEDLWERIQVLSSNGWKVES 240

Query: 241 VIVISSHVIVPRPHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAEFR 297
                    VPRPHL FEAQLVAGKSHEFG ISCPEQP+ PST S + YGKQK+DAE +
Sbjct: 241 ---------VPRPHLSFEAQLVAGKSHEFGPISCPEQPELPSTISAVAYGKQKHDAELK 285

The following BLAST results are available for this feature:

BLAST of Carg25435 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931611.1	8.7e-147	96.94	nuclear cap-binding protein subunit 1-like [Cucurbita moschata]	[more]
XP_023004357.1	7.4e-146	96.60	nuclear cap-binding protein subunit 1-like [Cucurbita maxima]	[more]
XP_023530943.1	1.1e-144	95.92	nuclear cap-binding protein subunit 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022154329.1	5.9e-135	88.10	nuclear cap-binding protein subunit 1 [Momordica charantia]	[more]
XP_008450385.1	1.1e-133	84.69	PREDICTED: nuclear cap-binding protein subunit 1 [Cucumis melo]	[more]

BLAST of Carg25435 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G13540.1	6.1e-102	60.41	ARM repeat superfamily protein	[more]

BLAST of Carg25435 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SIU2\|NCBP1_ARATH	1.1e-100	60.41	Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana OX=3702 GN=ABH1 PE...	[more]
sp\|Q10LJ0\|NCBP1_ORYSJ	1.2e-83	53.04	Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q16UN6\|NCBP1_AEDAE	7.5e-25	26.35	Nuclear cap-binding protein subunit 1 OS=Aedes aegypti OX=7159 GN=Cbp80 PE=3 SV=...	[more]
sp\|Q7PX35\|NCBP1_ANOGA	4.9e-24	25.99	Nuclear cap-binding protein subunit 1 OS=Anopheles gambiae OX=7165 GN=Cbp80 PE=3...	[more]
sp\|Q6DIE2\|NCBP1_XENTR	7.1e-23	25.63	Nuclear cap-binding protein subunit 1 OS=Xenopus tropicalis OX=8364 GN=ncbp1 PE=...	[more]

BLAST of Carg25435 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQ48\|A0A1S3BQ48_CUCME	7.3e-134	84.69	nuclear cap-binding protein subunit 1 OS=Cucumis melo OX=3656 GN=LOC103492007 PE...	[more]
tr\|A0A0A0M082\|A0A0A0M082_CUCSA	3.6e-133	84.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616300 PE=4 SV=1	[more]
tr\|A0A2P5FIP4\|A0A2P5FIP4_9ROSA	9.3e-113	67.91	Nuclear cap-binding protein subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_0...	[more]
tr\|D7T129\|D7T129_VITVI	4.6e-112	65.88	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g03810 PE=4 SV=...	[more]
tr\|A0A0D2W9D3\|A0A0D2W9D3_GOSRA	6.0e-112	67.89	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G252000 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0000339	RNA cap binding
GO:0003723	RNA binding
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005846	nuclear cap binding complex

Vocabulary: **Biological Process**
Term	Definition
GO:0051028	mRNA transport
GO:0045292	mRNA cis splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR027159	CBP80
IPR016021	MIF4-like_sf
IPR003890	MIF4G-like_typ-3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0051028	mRNA transport
cellular_component	GO:0005846	nuclear cap binding complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000339	RNA cap binding
molecular_function	GO:0005488	binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25435-RA	Carg25435-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003890	MIF4G-like, type 3	SMART	SM00543	if4_15	coord: 1..229 e-value: 7.9E-21 score: 85.2
IPR003890	MIF4G-like, type 3	PFAM	PF02854	MIF4G	coord: 20..192 e-value: 4.7E-26 score: 91.7
IPR016021	MIF4G-like domain superfamily	GENE3D	G3DSA:1.25.40.180		coord: 4..279 e-value: 2.2E-72 score: 245.8
IPR027159	Nuclear cap-binding protein subunit 1	PANTHER	PTHR12412	CAP BINDING PROTEIN	coord: 2..279
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 2..276

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25435	Cla006325	Watermelon (97103) v1	carwmB0421
Carg25435	MELO3C015159	Melon (DHL92) v3.5.1	carmeB0432

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25435	Silver-seed gourd	carcarB439
Carg25435	Cucumber (Gy14) v2	carcgybB0433
Carg25435	Cucumber (Gy14) v1	carcgyB0491
Carg25435	Cucurbita maxima (Rimu)	carcmaB0589
Carg25435	Cucurbita maxima (Rimu)	carcmaB0590
Carg25435	Cucurbita moschata (Rifu)	carcmoB0574
Carg25435	Cucurbita moschata (Rifu)	carcmoB0575
Carg25435	Cucurbita pepo (Zucchini)	carcpeB0595
Carg25435	Cucurbita pepo (Zucchini)	carcpeB0596
Carg25435	Wild cucumber (PI 183967)	carcpiB0462
Carg25435	Cucumber (Chinese Long) v2	carcuB0457
Carg25435	Cucumber (Chinese Long) v3	carcucB0458
Carg25435	Bottle gourd (USVL1VR-Ls)	carlsiB385
Carg25435	Melon (DHL92) v3.6.1	carmedB0434
Carg25435	Watermelon (Charleston Gray)	carwcgB0417
Carg25435	Watermelon (97103) v2	carwmbB0448
Carg25435	Wax gourd	carwgoB0510