Carg25421 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25421
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Location	Cucurbita_argyrosperma_scaffold_300 : 30018 .. 35444 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGTACTTTTTCACATCTTCAATCCTTTTGTTATGTTTCCACGCAGTTATATGTTTATTTCGAGATTCAGAAAAAGAGAAAGAAAAAAAACGTATATTGTGTGCTTCAATCGTGATCTTGAGCTTATTTTGCTATCTATGGCATCCTTAACCTCCTGTTTCCTTGATTATCAAGTCAGATGCTCACGTTGGTCACATTTTTGTTTTGGTTTTTACCTTTTCCGCTAGTTCTATATAATGATAATCTTGCATCAGAATGTGATCAAGGGGATTTAGTTGGGTGTGTATACATATCTAGGAAGCATGAGGGTGTGTTTATCCTGAACTCTTGTAATCCTTTTTTGAAGTTCTATTTTAGTCTCTAACATTACTAAAAGTAGGTAGGGTTAGATTTATCCTAAATACTATTTTACAATCTTAGCATTCTCTTGAGCATTTGGAAGATCTTTTGCAATATTATGACTTGGGGTTCTTCCTTTTCCCTTCTGTTGTAAATTCATTTGTCAACGAAATTCTCTTTTCTCTATTAAGCGAAAGTGTTATGAAGAGAATTTTGACATCACTAACGGGTTAGTGCCCATGGTACGAAGTAGAAATACCGAGGGCCGTTACGTGGGAGAGAAAAAGATGATCAGTTCTTATTGGTTTGGAGTATCATAAGCCCTCAGTCTTGATTGTTTAAATTCTGAGGAGGGATGAAGAATAGTATTATTGAGATTAGATGGAGAATAGTATTGTTGCGATTTTCTTGTGGGTTGAGGTAAGGTCCACATCTATCATCTTTGATTTTGTAAAGACACCTTGCTCTTCTTGGTCCAACTCCATAATACAACTGCCAAGTGTTTAAATTGGTGAAGGAGTTGGCTTCAATGTCCAAACTCAGGATTAACCTTCTTGTTAAAGGAATGACCTTAATTTAAGGAATATCGGGTAACTCCCAGCTTTAATTTAAGGAATATTTTTGTAATCCCATTAAATAGTTACCTAGTGTTTAGGAATTTATTTTTCTTGTACTTTTACCTAGTATCTAAGTATTTAATTAGATTTATTTTATGTATTGTTTCCTAGTATCTAGGGATTTAGTTATTTTTCTATAGTATGAAAGATACAAAGACACATATATCTTTCTAGAAATTAATTAAAAAGTGAGTAAGATAATTTTCACTTACAACATGGTATCAGAGTCATTCTATTATGAGAGGTCTAATTAATCAATATAGCCTTTATAGTTACCAATCTTCTACCTTGACCAAAATTTATTTGGAGTATTCATAGCTACCGATCTTCCACTTTGAGCCCCACTCGTGGAAGTCAACAATCCCATTTTTGCTCGACAGCCCATTTTCCAATGTGAGAATGTATATATATATTTTCTTTTGTAGAATACTTGAAGGAAGGGAGACCACTTATTGGCCTTTTTTTCTTGGCTCATTCAAGCCCATTTTTTGCCCAATAACAAATCCGAAGCAAGGAAAATGTATGAGCGGCGTTGGCCCGAGCCCACTATTTTTCCATTTTTATTCACTAAAGTTTTCTGTTCAGCATTTGCTTGAAGAGGAGGCCCATTTTTCTTTGAGAGATAGTCATGTCAGGAGAATCAAAATTTTTGTCAATAGTAGAAGAAATTCCTATAGACAAATGTGATAATGAATCACTCTAAGGGAAAGTAAGATTCTGATTACCTTGTTGATCAAATATCTCAAGACAAGAACATTTGATTGAGATCTGAATTACTCCACAAGCAAGATCAATTATTTCAAGCTGGAAAGATTTTACACTTGCAATCTGAACTACATAAAATTGCAAAGAAACGTAGCCCTTGGCTAAAGGAAGCAAAAATGCTCTTTTTACTACATTTTTCAAGTCTCCTTTGCAAATATAATATACATGGCTTTATATAGCCTCAAAATGAAACCCTTTACCTTCCATGAGCCATTTCAAGAGTTTGTAACCTTCATAACCATAATTAGCCTTATGTAAATGTAACCTAAAAATAAATAAAAAGTCTTAAAACTTAATATACATTAATGAAACACCAAAAATCTAGATTTTAATCATCCATCGTAAACTTTTAACCATCTAAGAATAAATTGAAGCCATATTTGAAGTATCTTTAAGCTCTTGTTGCATAAATGAGACTTGATTCTTCTTGAATGTGAAATTGATTGCAACTTGAGTTCAATTTTAATAGAACTTGGCTTTATCTTTAATAGAACCTGACTTTATCTTGTGGTAATTTGAACAACATTATTCACAACTTCCTTCAAGTTCATTGTATGATTGAGATGCAATCAATCATATCACAATGTCCGAAGAAAGATGATATTCAACCCATTCGATATTGACTCAATAGAGAAAAAGAAAATCTTAAATGGTCTTAAATTGTGTGGACATACCTTTAAGGATATGAAATTTTTTGACATTTCATTGGACCAAGACCAGCAAAGACGTACCCAGGATTTGTTGCATGGTATGAGAATGACTCCATATGAATGTCATGGCTTGATCAAGTTCGTGTACAAATCATTGAAGAAGCAGAAACAAGATCTCTAGAAGAAACACGCTTTCCTACTTGGGCAAATGAAGTCTTTTGTTTGACGAACGACCTAGTTTTAGATGCATCAACATAAAGAAAGAAACAATGGAAGAGACAACCAATGAAAGAGTAATAAAGACAATTTATGGTGTACTCACGGCAAGAAACTATGACACATGAATGAGAGTTGTTGGAAGTTGAACGGAAAACCTCCTGGCCGTGAATGGGAAAATCGGGGAGGCTCATAGAATCATGGTTGGAGAAACAAGGAAGAAATGTTGAATGCACGAGCTTACATTGCAGAGGAACCAAATCAGAATAGAAATCATCAATTGTGAGGCTCACAAAATCATGGTTGGAGGAACTAGGGAGAAATTTCGAAGGAACGGACGTACACCAAAGAGGAATCTAAATGAGAACAAAAGTCACCAATCGTGGAAACTAGTGGTTTCTATAGTGAAGCGTTTGAGAGATTGAGGGTGTTTTTGGACTCTCTCAACAAGCCATCAAATTCTAGTGTTTTGACAATCTCAAGTAAGTCTTCATTCATCTTTTGTATAAATCCTTTAGAGATAGTTAGATTAACTTTTGGATTATAGACTTTGGTGCAACTGATCACATGACCCTCACTCACAATGTTTAAAACATATAAACCTTGTTTGAGGAATCAAAAGATTGCAGGCAAATGGAATTAGTGCAACTGTTGCAAGAATAGGCGATGTATCTATCTCTTAAACCCTAAAACATGTCCTACATGTTTCAAACTATCTAATAGTCTCATTTCTATACAACAACTTACTCATGGATGCCACTGTAGTGTTTCTTTCTACTCGTCATGTTGTGTTTTTGAGGACCAGGTCTCGAGACGGTTGATTGGACTTTCTAAGGAATTGAAGGACCTATACTACTTGCAACTACCTAAGAAGACAACAAGACATTTCCTTGTTCAGTTCTTAGTTCCTCAAATAAAGATGCGATTTGGTTACATCACCTTCACATGGGTTGTCTCTCATTTAGAGTCTTGAAAATTATGTTTCCAGAATTGTTTCAAGGATTTCAAGGTTTTGAGTTTCATTGTGATATAATGTGAATTTTCCAAACATACACGTGTATCGTTTTCTATCAATTAAAATAAAAGATCTACGCCTTTTCATTTAATTCATAGTGATATATGGGCACCCTCAACTGTTACAAGCCATTCAACCGGTGCCCATTGGATTCTCACATTAATTGACAATTTTGTGAGCCCCATGATTGGTGCTTGTGTAGCTACATTTTAGCGTACTTTTTATTATTTCATTCACATCAATGACATTGTCTCTTATCTAAAAATAGAACTTTACTTATGGTGCTTCCATTATTAAATCTTTGACTTTTTCCTTTATCTTTGTGTTTATATTTTTCGTACTCTTTATTATACATAAAGTAGGTGGACGAGAAGAGCTAGTGTCATGCTTGAACATATCAATATCTTTTCCATATTAATGTGAAAGCCCATTTCTACGCTTTGCTTGGTTGATCTAATTCTGGTTATTTATTTATTTTAATTCCTATGTAGACAAGCACACAAACATTTTATGATAGATTCCCCGAGCTTTATGTTAGCCTTTTAAGTCTAATTCTGTAATCATGCTGAGTACAGTATTTCTGCCTCTTCATCATTCTTATCATAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTATGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGTGAGTACGGTCTTGTTTCTCCAGATGAAAAAGGAATACAAGCACATATTTTCTAAGTGCATAGCTTTGTAACTACTTCTATATGTATTATAATTTATTTCTTATATAGTGAAGGTGTGTACAAACTAGCTCATACATACATAGATTTAAAAAAAAAGAAAAAAAGAAGAGTAATCCTGCGGGTTTATCTTCTTGTTTATTTTCTACATGTTTTGAGTATATAAGCATGCTTTGATCTGATAATTTGTCGTGCAATCAGATTTGATTATGATTTTGATATAACTATCCATGATTTTGAAAATGGACATATTTGTTAAGATATATATTTTATCAAATATATATCATTTTTTATACCAGAAGAGAATTCAAAGTCACTAAGTTTATGCATTTATATGCTTAGAGAAACTAGTTTGATGATGCATTTCCCTCTAAAAGTTTATTATTTTTGTTCTATATTATTACATGTCTATTTCATATATTTCACGAGTGTTTGATATGTATCTTACAAATGTCGGTCTTATATTGACTTTGTACAATTAGTGTCTAATACCTTGTGTATTGTGCTAACCAAGTGTTCCATACAAGTCGGAGAAACACACAGACACACTAGCCAGACTAAAGTGTCCGTACTTCTTCATTTTTCATATTAGTACGTGTGCTTATTCATATAATTCTATGCAGAATGTATAATTTTCAAAAAGTATTTTTTGTAATTAAGCATATAATTTTTTTTTTCTGCGTGTGGTTTTAATGGGTAGATATTGGATTAGCCATCTTTTAGCTTGTCTCTGTATTTCACCTGCACTTCCATTGCAAAGATTCTGAGTAATATCTTTATGGTTTCAGGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCTCTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGTTATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG

mRNA sequence

ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTATGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCTCTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGTTATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG

Coding sequence (CDS)

ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTATGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCTCTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGTTATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG

Protein sequence

MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRIQNCYHLRIFPMISLMVH

Homology

[Close]

BLAST of Carg25421 vs. NCBI nr
Match: XP_022973773.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]

BLAST of Carg25421 vs. NCBI nr
Match: XP_023530885.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]

BLAST of Carg25421 vs. NCBI nr
Match: XP_022931972.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 5.8e-36
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MD MAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDWMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]

BLAST of Carg25421 vs. NCBI nr
Match: GAV62100.1 (RCC1 domain-containing protein/FYVE domain-containing protein/BRX domain-containing protein/Mcp5_PH domain-containing protein/BRX_N domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 78/86 (90.70%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M RMDRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRMDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]

BLAST of Carg25421 vs. NCBI nr
Match: XP_017611069.1 (PREDICTED: uncharacterized protein LOC108456859 [Gossypium arboreum] >KHG00947.1 putative E3 ubiquitin-protein ligase HERC1 [Gossypium arboreum] >KHG25966.1 putative E3 ubiquitin-protein ligase HERC1 [Gossypium arboreum])

HSP 1 Score: 156.4 bits (394), Expect = 6.4e-35
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRTDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]

BLAST of Carg25421 vs. TAIR10
Match: AT5G12350.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-35
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R  RMA DLSR G  ERD+EQAI ALKKGAYLLKYGRRGKPKFCPFR+SNDE+VLIWF
Sbjct: 1  MSRNGRMASDLSRAGPVERDIEQAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SG EEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGNEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]

BLAST of Carg25421 vs. TAIR10
Match: AT5G19420.2 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 126.7 bits (317), Expect = 9.9e-30
Identity = 68/104 (65.38%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 10  DLSRTGAGERDVEQ---------------------------AITALKKGAYLLKYGRRGK 69
           DLSR G   RD+EQ                           AITALKKGAYLLKYGRRGK
Sbjct: 18  DLSRAGPVTRDIEQLKIELYSTFGVSKLDSSYILENKNALHAITALKKGAYLLKYGRRGK 77

Query: 70  PKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ 87
           PKFCPFR+SNDESVLIWFSGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 78  PKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQ 121

[Close]

BLAST of Carg25421 vs. TAIR10
Match: AT1G69710.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 117.9 bits (294), Expect = 4.6e-27
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 10 DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLK 69
          D  RT   ERDVEQAIT+LKKG+YLLKYGRRGKPKFCPF++++DES L+W+SGKEEK +K
Sbjct: 16 DSLRTSFSERDVEQAITSLKKGSYLLKYGRRGKPKFCPFQLTSDESALVWYSGKEEKQIK 75

Query: 70 LSHVSRIISGQRT 83
          LS V RI+ GQRT
Sbjct: 76 LSQVLRIVPGQRT 88

[Close]

BLAST of Carg25421 vs. TAIR10
Match: AT3G47660.1 (Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 100.5 bits (249), Expect = 7.6e-22
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 18  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRII 77
           +R+ EQAI  LKKGAYLLKYGRRGKPKF PFR+S+DE  L+W+ GK+EK LKLS V+RII
Sbjct: 14  DRENEQAIAILKKGAYLLKYGRRGKPKFYPFRLSSDEIYLLWYCGKKEKRLKLSSVTRII 73

Query: 78  SGQRTVSLQFKIIIISEYPIQNNYYWEYRI 108
            GQRT        +   YP     Y  + +
Sbjct: 74  PGQRTA-------VFRRYPQPTKEYQSFSL 96

[Close]

BLAST of Carg25421 vs. TAIR10
Match: AT5G42140.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-20
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 21 VEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQ 80
          V QA+ ALKKGA LLKYGR+GKPKFCPFR+SNDE+ LIW S   EK LKL+ VS+I+ GQ
Sbjct: 9  VLQALIALKKGAQLLKYGRKGKPKFCPFRLSNDETSLIWISNGGEKRLKLATVSKIVPGQ 68

Query: 81 RTVSLQ 87
          RT   Q
Sbjct: 69 RTAVFQ 74

[Close]

BLAST of Carg25421 vs. Swiss-Prot
Match: sp|Q947D2|PRAF1_ARATH (PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 10 DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLK 69
          DL      + ++EQA+  LKKG  LLKYGR+GKPKF PFR+S+DE  LIW S   EK LK
Sbjct: 3  DLVTYSNADHNLEQALITLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLK 62

Query: 70 LSHVSRIISGQRTVSLQ 87
          L+ VS+I+ GQRT   Q
Sbjct: 63 LASVSKIVPGQRTAVFQ 79

[Close]

BLAST of Carg25421 vs. TrEMBL
Match: tr|A0A1Q3B2B4|A0A1Q3B2B4_CEPFO (RCC1 domain-containing protein/FYVE domain-containing protein/BRX domain-containing protein/Mcp5_PH domain-containing protein/BRX_N domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05624 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.5e-36
Identity = 78/86 (90.70%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M RMDRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRMDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]

BLAST of Carg25421 vs. TrEMBL
Match: tr|A0A0B0MKP3|A0A0B0MKP3_GOSAR (Putative E3 ubiquitin-protein ligase HERC1 OS=Gossypium arboreum OX=29729 GN=F383_06438 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.2e-35
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRTDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]

BLAST of Carg25421 vs. TrEMBL
Match: tr|A0A1U8I6A4|A0A1U8I6A4_GOSHI (uncharacterized protein LOC107891452 OS=Gossypium hirsutum OX=3635 GN=LOC107891452 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.2e-35
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRTDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]

BLAST of Carg25421 vs. TrEMBL
Match: tr|A0A1U8I0F6|A0A1U8I0F6_GOSHI (uncharacterized protein LOC107889283 OS=Gossypium hirsutum OX=3635 GN=LOC107889283 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.2e-35
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRTDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]

BLAST of Carg25421 vs. TrEMBL
Match: tr|A0A0D2NR73|A0A0D2NR73_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G123800 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.2e-35
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRTDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

The following BLAST results are available for this feature:

BLAST of Carg25421 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973773.1	6.8e-37	100.00	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima]	[more]
XP_023530885.1	6.8e-37	100.00	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931972.1	5.8e-36	98.73	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata]	[more]
GAV62100.1	1.3e-35	90.70	RCC1 domain-containing protein/FYVE domain-containing protein/BRX domain-contain...	[more]
XP_017611069.1	6.4e-35	89.53	PREDICTED: uncharacterized protein LOC108456859 [Gossypium arboreum] >KHG00947.1...	[more]

BLAST of Carg25421 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12350.1	2.0e-35	82.56	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G19420.2	9.9e-30	65.38	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT1G69710.1	4.6e-27	72.60	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT3G47660.1	7.6e-22	55.56	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G42140.1	2.4e-20	68.18	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]

BLAST of Carg25421 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q947D2\|PRAF1_ARATH	1.1e-17	55.84	PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg25421 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1Q3B2B4\|A0A1Q3B2B4_CEPFO	8.5e-36	90.70	RCC1 domain-containing protein/FYVE domain-containing protein/BRX domain-contain...	[more]
tr\|A0A0B0MKP3\|A0A0B0MKP3_GOSAR	4.2e-35	89.53	Putative E3 ubiquitin-protein ligase HERC1 OS=Gossypium arboreum OX=29729 GN=F38...	[more]
tr\|A0A1U8I6A4\|A0A1U8I6A4_GOSHI	4.2e-35	89.53	uncharacterized protein LOC107891452 OS=Gossypium hirsutum OX=3635 GN=LOC1078914...	[more]
tr\|A0A1U8I0F6\|A0A1U8I0F6_GOSHI	4.2e-35	89.53	uncharacterized protein LOC107889283 OS=Gossypium hirsutum OX=3635 GN=LOC1078892...	[more]
tr\|A0A0D2NR73\|A0A0D2NR73_GOSRA	4.2e-35	89.53	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G123800 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011993	PH-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25421-RA	Carg25421-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011993	PH-like domain superfamily	GENE3D	G3DSA:2.30.29.30		coord: 19..101 e-value: 1.3E-5 score: 26.7
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 16..85
None	No IPR available	PANTHER	PTHR22870:SF244	REGULATOR OF CHROMOSOME CONDENSATION RCC1 FAMILY PROTEIN-RELATED	coord: 16..85
None	No IPR available	SUPERFAMILY	SSF50729	PH domain-like	coord: 20..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25421	Cla97C03G062970	Watermelon (97103) v2	carwmbB0448
Carg25421	Bhi02G001256	Wax gourd	carwgoB0510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25421	Cucumber (Gy14) v2	carcgybB0433
Carg25421	Cucurbita maxima (Rimu)	carcmaB0589
Carg25421	Cucurbita maxima (Rimu)	carcmaB0590
Carg25421	Cucurbita moschata (Rifu)	carcmoB0574
Carg25421	Cucurbita moschata (Rifu)	carcmoB0575
Carg25421	Cucurbita pepo (Zucchini)	carcpeB0595
Carg25421	Cucurbita pepo (Zucchini)	carcpeB0596
Carg25421	Wild cucumber (PI 183967)	carcpiB0462
Carg25421	Cucumber (Chinese Long) v2	carcuB0457
Carg25421	Cucumber (Chinese Long) v3	carcucB0458
Carg25421	Bottle gourd (USVL1VR-Ls)	carlsiB385
Carg25421	Melon (DHL92) v3.5.1	carmeB0432
Carg25421	Melon (DHL92) v3.6.1	carmedB0434
Carg25421	Watermelon (Charleston Gray)	carwcgB0417