Carg25416 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25416
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Signal recognition particle subunit SRP68
Location	Cucurbita_argyrosperma_scaffold_300 : 1804 .. 8312 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCATGGCCGTGGAAAGTACACCAAACGAGCCATAACTCAATCAACTGTTACTGAAGTCAGGTTTGTCCCATTTAATAGTTTTTTAATGCCGAGAGTAGCATAATTTTGTCGAATATTTACATGTTGCTTCTATACTCGCCCTTTTTTTGTTTGCGCTTCAAAGCAGTCTCCTCCTGTTACTGATTAGAAAAATACTCTAGATATTGTTAACTAGATGGTCAATGATGTCTCCCCTTAATGTACACTGATTCTAATGAAGTGGGGAAGGAAAAAGGAAGGGAAAGAAGATGGCGAAGTGTTAATTTATTTGAGCATTGTCTGTGGCTGTGTTAAATTCAACAAAGTTTAAAACTATCAACCTTCTGGATTTAAAATAGGTTTCTCCATGTGGTTCTTTATACGGCGGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAATTACCAGAGGTCCAAATGCACGTCAGCGTATCTATTTGATTGGTTAGGCTCAGAAAGGCAGTAAAATGGGCGGACTCTCTTCGCACAATTGTGTGCAAGCAAGGGAGACTCAAGAACATCTTGGAAGCAGAGGTTTGGTCCTAGTTTTCTTCTTATGGAATATATGTTATATATGATACTCTTTTAACTTCGAAATTTTAGAATTACGTCTTCATGAAGAGTGATTTTTCATAATTTTTTTTTTTTTTTTTTTTTTTGTTTCTCAGCTGATAATTATTTGTTCATATATGTAGGCTTATGCATCTTATATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGGTGCTTCCTTGTATTTTCTCGATCTTTAAATTCCTTCTTAGAATGATCAACTAATTCTTGCATTACCTTCTTTTTAAGGGTTAATATGCATTATGCAAAATTTTTTGCTCTATGGATGTTTTACTAGCTATTTTTGTTTATTTATTTATTTTTCTGTCCTCTATATTAGAAAGGTCAAAAATCCCTTTGAGAGATAATGCCACTGTCATACTAGGAAAGTCTGGAAGACTCATTTAGAAGAGACTTTGGGATTGAATTGGGTTTAGTACCTCTATTCAAGCTTTAATTCCCACAAATTTGCATATAAATTGTTTTGATTTAGATGGCTGGTACACTGTGTTGACATCCCGTAATTCTTCCCTCTCCTACTCTTTTCACTGAAAGTAATATTTTGTTCCAACCAAATTTCCCAAAAAATGGCCCTAGAAGCATTAAGTGAAAAAGTTCGCATCTTTTCTTTGAAACTTTTGACCAAAAAGGAGAATATGAATGGCTTTCGTGATCCTTGAAAGTTGGGTAAGCTGACAGCAAAAGGATCATTAAAGCTTCAGTGTGTAATTGCAACTGAGGAAAAGGCGATTAGCATTCTTATTCATACTGTTGAAGATCACCGTAGGATAATGCGAAGACAATTACATATCTATGATGTATACTGTTATCCATTTGTAAAGAATCAAATAATTGTGAAGGATACATCTTATAGCAATAAAATTTGTAAAGCACACTTGATCTCTTAAAGGCCCTGCATTGTTTATCATCTCATTTTGATTTAGATAACATGATTAGCTAATATTATGTTTACCTTTCAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGTCTGTTTGCTTGCCTTTTACTTTCAAGTTTATTCATTTATCATTTTTGTTCAGATTCTTATTTATTTGATTTATAAGCATTGCATATACAATGTATTTATGTACGAGCACCATAAATTAAACAATTTTACTGAAAGAGATCTGTCAGCTAACAAAAATCTCAGACTCATATTGGTTTTCACAGTTTATAAGAATTCAATTCTCTTGTTGATTTCGGTGTTTCCTTTTCTGCAAAGTTGTTTTATTGTCAATAAAGTTATCTATTAGTTTTCAAGAAAGCGTTGTTTGAGACTTTGGTTTTGATTTAATTGATTCCAGACCAACTTTTTGCTTTAAAAGTGTTCTGGCTTCAACGAAGTTTTTTTTTATTTAGTTTGGAGAGGTTTTCGCCCAAGGACAAGTTTGAGTTTTTAGACTAGATTCTCTCATCTCCCTTTCTTTTAAGACTTCAGTATAGGCATAGATCTTTGTGGTTAATGGTGGTGGACCTGTGGTTGTTATACCTTCACTTTCTCAATGGAAGCTTGGGTTTTCATAAAAAGAGAAAAAGGTAAAAAGAAAATAAAAACCTTGTATGCTTCATTATTGGTATCCTGACCACGGGTTCTTTTCCCAGTAGTTAGCAGACGAGTAATCTAACAGTAGTTGAAGTCAAGATAGACCAGTTTATCTTAATGTGGATTCAAACAGAGGTTTATCTATAACTGTAGTATACTTGTTATTGATCGTTGTCTATTTGTTGTTAGATAGACCGTAGACCTAAGAACATTGCTTGTTATAGAGAAACATAAGACAACAGATAATCACATGAGAATATCCTTCACACTGCCTACTGCTTGATACATTAAAGTTTCTCAATAATCGTGGCATTGATTTTCTCTTGTTTTCTTGTTTTGGTTAATCTGATAATGTTTTTCACTCTTTTAGTCTATGTAGCGGTCTTAGCTTATTGTTATAATCTTGTACATTCTTGCTCTGTAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGACGGAGTTTCATTGCTTGGTCATAGGTTTCCAATATCAATGCTAAACAACTAGAGTTTCCATATTGAAAGGTTGGTGATTCGTTTAGCATCGTTTAAATACTGGATAAATATGATGATTTTATTGTGTAGTAACTTAGACTGCTAGTAACCAGAAATTTAATGGCCTGTATCTTATATGCTCCAACAAAGAGGTTGCTTTCCAAACTTATAGATGCAATATTTAGTTTGTCCTTGGTAGAAATCTCCTAAAAAAGATGCGGGGTTGGCGGAACAACGGTTTAACAGTAGAGATGTAAAAGATGACTTCTATAGTGAAGAATACTTCTACTGTATTCTGAATAAGCATGACTACTTTAATCCCTTTCGGTTATTGATTTAATATCTCTGTGGAATTTTCGGGGTGTCCCTATTGCAATCAGTTCTGGGTTTTAGACTGGATGTAGTGGTTGATGGGGGACGGTGAAGACTAACTCAAAATTGCGATGTAATAAGTATTACTCTTTCGCCTATTTGCAATTTTAAAACCAAGAAAATATGCAATCTTAATGGAGAACCCGTCTAGTAGGCAAAAGTTAATACCTCAATCGAATTGGGGAGGGGGCGAAAAGAGAACACTCCCAACTCCTTGCTTCCGAAAGGAAATACTAAAGGCCATCAGCTGTACTTTCTTATATTTTACTTGATCTAATGAAAGGTTTACTACTTTCCCCCTGTTAAATTTTCTCTCTTTATCTTAATTAATTGGCGAGTGTTCTGTTGCTATCATCTTTCTTCTTTCCGATTGCGATAACTTCCCACCTGAATTCTCATTTTATTTTAAGGTTGCTTACAAATGATATGTATGTTCACAGGACGTTTGACTTGTATCTAGAGTTCACCTCGGACTTTTTATGATTGCTTACACCGAAGTGTTTGGCACTAGATAAAGTTAGTGAAGGTATAGTTCGTAAACCTATTTTCCTGTAGGAATTCCTTTATTATGTTGTATTGCTAGAATCTGTCGAAGGCATGCACCTACCATTCAGGTTCATATTTTTCACTTTTAAAGTCATCCAGAATCGCATAATTATGTCTGCTCATGTAAATTAATCCTAGCTCGGGAAGTTACGAAAAGGATTTGCAAGATCAGCAGATTCACTTCCAGACCAGAAAAAGACTGACGCCATTTTTGATAAAGAATCTTTACAGCATACCATGAGGCAAGGAGCTCATTCGCATGATCTGGTATGTGGAAGATTGACATGTAGACTTCCTTTGAATTGTTCTAGAGTTTTGCATCTCTACTAATTCGATCTTCCAGACTTATGTTTGCCAGTGTTCTGTTTGAGTTAGGTCAGCCGCTGGAAATGCTGAAAAAATGTCAAAGATGATTTAAGTGGGCTTGATAAAGTGTTAGTTGCAGTGTGGCCAAAGGACAATTGAACGCAACCCAGTTATTGTGAAAATCGCAACAAGTAAGCTTGTTAGGGCCGCCACGATGAAAAAAATGAGAAAGTTAACCAAGCCGGAGGAAACTTGTTCCGCTTGTATGATCTCTTTCAGTTCAACAAGTTAAGCTAGTTTTATGTATTTCTCTTATACTTCCTCTTTTCGTGTTCTGTCATTGATTGCTCGACCACAATCTAGAGGTTTTTCAGAGTTAGTCAATTTAGCTTTTCTAGCAAGTTATAGTTATTGAGTTATTATTATTATTATTGCCGAATCTTGCTGAACCTTTCTGATTTAGCAGTTCGGAATAAGAGATAGGAAGCCAGGAAGAAGTGACATTTGCTTGAAGGTGCTCACTGTAAAAGTAATAGCTTTTCGTGGAAAAGCGTTTCTCTCCTGAATATTACTTTATCTTTCTATTCTGATCAGAACAGCCTCCATATTCTACAAGTTATGAGTCTAGCATTTTGCATTCTAAACTTTCTGTTCCTGTTGCTTTCGTAATTAATGTGAAACTATTTGCTCATAATGCGCTATATCCCGAGACCATGTTCCTTGAGCCTCATAACGCCTTGCCTTTAGCTGTATTCCCGCCACCTTCGTTGTTGTTTTTACATTCCCTTTCCTTCATACTTCGTTACCTGCCACGCTTGTATTATGCCCTGGCAACATAAAGTTGTCATTACTCACTCAACTTATGACTAGCTGTTGTCATAGATTATTTTTGTCTTTTGTTCTTGATAGTTGTCATTACTTCACCTCAATTATGGATTAATTGATGTTTGCTGAGCACTAATTTACCGTATGATGGGTCGATCCTCTAACTGATATTTTCAGGTGCTTTTACTTCGGCAAAATCATTACCAGTCTGGCTGAAAAAAGAGGCTGAAGCTCCATGTACTTTACTCGCCATGCTCGCCTCCTTGTCGAAGATGCCATACAAAAACTGTCCGTTCGGAAAATAATCAGTGAACCCGGTATGTGTATCATATGAGAATAGTCTGGTATCATACTGGTCAGGAGTCTGGACTTTTTGCAAGTAACATTGAAAGACTTCGACTGAACCTTTTGATACAGGAAGATTATCGGAAGAGTTGAAGACTATTGATTGAGGAAGCAGACAGTTGTATTGAGCATGCAATCTGAATCATGGAGGAGATTAAGCGACTCCGAGCATCTATGCGAACAAGATCCATCAGAAACATGTCATTAACGGATGGCATGGTAGAGAAGGTTACTGATTGTGTTCATTCTACTTTGGGCCTGTTATCCTTTTTACTGGAACCAGATTGAATGAACTGAATTGCTGGTCCCTGGATGCAATAATACTCCCTCGTAGAAGAAAATCATGGTCTTCAATAGTAAATCTTTTGAGCAGTTTTGATGATTTCCATGTTGTATCGATAACACGCAACTTATTTTCTTCCTAGCCAAGTCAGTGTTTTGGCGCGAGCACCATGTTCTATATTAGTTACATCTTTCCTGAGCTGCTCAAAACATTCTAGAAATTCCATCTTTCAGAAATGTGCTAAGCGGTCAAATACCTCGCTAGAGCCTCCGACAACTATGCAAGTCTTGTGATCGCCAGATTCGAATACCACAGAGTGCTTCCACGCATTGAAGCCCTTATCCCTCCCGCCTTTCAGGCGGATCCCCCGGAATCACCATTTGCTTCTGGACCCTTGCTGTTAGACTTCCACCTTCGATTCCCAGATCTGCTCTGAGAAATGAGATGAAAAAAGGACAGAAAGGGCTTATATCAGTGAGGTGCTATGGGGATGAGCTTCTTCGTGCACAGGTTTGGTTTTCTTTGCTGCCTGGTTTTTGTTTTGCTGGTGGATACATGAATATAGATACAGAACTTGGTACTGATCCTTTAACAACTTCCCAGCCCCCCTTGTGAATTCTGGGTCACGGTTGGAAACTAATGACTGTTTGTTTCTTGGTTTCTCTCGGATGTGTAGCAAAGATATAGGATCAATTTTCAGGATTTTTGTTAGAGCCTGCTTGTGACTGTTGCAGATTACACATTGTTTAGTATCTGATTTTTGCTAATAATTTTGAGTTCATTGTGGATATTTTAGGCGTTGATTCGAAAATTCTGTCACGATACAGTTATTTACCACACCTATGAGGATATGATTAAATTGATATGGCTATGATAAGCTACCATTACAAACACCTTGTCTCGCTAATCAGCTGGCAGTCCCCATGCCCTGCCATAAAAAA

mRNA sequence

CGCATGGCCGTGGAAAGTACACCAAACGAGCCATAACTCAATCAACTGTTACTGAAGTCAGGTTTCTCCATGTGGTTCTTTATACGGCGGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAATTACCAGAGGTCCAAATGCACGTCAGCGTATCTATTTGATTGGTTAGGCTCAGAAAGGCAGTAAAATGGGCGGACTCTCTTCGCACAATTGTGTGCAAGCAAGGGAGACTCAAGAACATCTTGGAAGCAGAGGCTTATGCATCTTATATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGACGGAGTTTCATTGCTTGGTCATAGGTTTCCAATATCAATGCTAAACAACTAGAGTTTCCATATTGAAAGCTCGGGAAGTTACGAAAAGGATTTGCAAGATCAGCAGATTCACTTCCAGACCAGAAAAAGACTGACGCCATTTTTGATAAAGAATCTTTACAGCATACCATGAGGCAAGGAGCTCATTCGCATGATCTGGTCAGCCGCTGGAAATGCTGAAAAAATGTCAAAGATGATTTAAGTGGGCTTGATAAAGTGTTAGTTGCAGTGTGGCCAAAGGACAATTGAACGCAACCCAGTTATTGTGAAAATCGCAACAAGTAAGCTTGTTAGGGCCGCCACGATGAAAAAAATGAGAAAGTTAACCAAGCCGGAGGAAACTTGTTCCGCTTGTATGATCTCTTATTGCCGAATCTTGCTGAACCTTTCTGATTTAGCAGTTCGGAATAAGAGATAGGAAGCCAGGAAGAAGTGACATTTGCTTGAAGGTGCTCACTGTAAAAGTAATAGCTTTTCGTGGAAAAGCGTGCTTTTACTTCGGCAAAATCATTACCAGTCTGGCTGAAAAAAGAGGCTGAAGCTCCATGTACTTTACTCGCCATGCTCGCCTCCTTGTCGAAGATGCCATACAAAAACTGTCCGTTCGGAAAATAATCAGTGAACCCGGAAGATTATCGGAAGAGTTGAAGACTATTGATTGAGGAAGCAGACAGTTGTATTGAGCATGCAATCTGAATCATGGAGGAGATTAAGCGACTCCGAGCATCTATGCGAACAAGATCCATCAGAAACATGTCATTAACGGATGGCATGGTAGAGAAGAAATGTGCTAAGCGGTCAAATACCTCGCTAGAGCCTCCGACAACTATGCAAGTCTTGTGATCGCCAGATTCGAATACCACAGAGTGCTTCCACGCATTGAAGCCCTTATCCCTCCCGCCTTTCAGGCGGATCCCCCGGAATCACCATTTGCTTCTGGACCCTTGCTGTTAGACTTCCACCTTCGATTCCCAGATCTGCTCTGAGAAATGAGATGAAAAAAGGACAGAAAGGGCTTATATCAGTGAGGTGCTATGGGGATGAGCTTCTTCGTGCACAGGTTTGGTTTTCTTTGCTGCCTGGTTTTTGTTTTGCTGGTGGATACATGAATATAGATACAGAACTTGGTACTGATCCTTTAACAACTTCCCAGCCCCCCTTGTGAATTCTGGGTCACGGTTGGAAACTAATGACTGTTTGTTTCTTGGTTTCTCTCGGATGTGTAGCAAAGATATAGGATCAATTTTCAGGATTTTTGTTAGAGCCTGCTTGTGACTGTTGCAGATTACACATTGTTTAGTATCTGATTTTTGCTAATAATTTTGAGTTCATTGTGGATATTTTAGGCGTTGATTCGAAAATTCTGTCACGATACAGTTATTTACCACACCTATGAGGATATGATTAAATTGATATGGCTATGATAAGCTACCATTACAAACACCTTGTCTCGCTAATCAGCTGGCAGTCCCCATGCCCTGCCATAAAAAA

Coding sequence (CDS)

ATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGA

Protein sequence

MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP

Homology

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_022933753.1 (signal recognition particle subunit SRP68-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_022933752.1 (signal recognition particle subunit SRP68-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_022965818.1 (signal recognition particle subunit SRP68-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_022965811.1 (signal recognition particle subunit SRP68-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. NCBI nr
Match: XP_023531771.1 (signal recognition particle subunit SRP68-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. TAIR10
Match: AT5G61970.1 (signal recognition particle-related / SRP-related)

HSP 1 Score: 170.6 bits (431), Expect = 4.9e-43
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           M G LLFEQD+NW+  L  FK +RAVYEELGK GDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 162 MKGTLLFEQDQNWETGLACFKNARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKI 221

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+Q SELL IGEMEGPALDLFKAK+EA M EARSQQA
Sbjct: 222 GKSNLQTSELLQIGEMEGPALDLFKAKIEAAMEEARSQQA 261

[Close]

BLAST of Carg25416 vs. Swiss-Prot
Match: sp|Q00004|SRP68_CANLF (Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=SRP68 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 190 LSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 249

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 250 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 287

[Close]

BLAST of Carg25416 vs. Swiss-Prot
Match: sp|Q9UHB9|SRP68_HUMAN (Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-10
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 193 LSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 252

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 253 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 290

[Close]

BLAST of Carg25416 vs. Swiss-Prot
Match: sp|Q8BMA6|SRP68_MOUSE (Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + I
Sbjct: 192 LSGMLRFEH-QEWKSAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNI 251

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G  +   +EL+ +    G    L   KLEA++++ R++QA
Sbjct: 252 GDQS-AINELMQMRLRSGGTEGLLAEKLEALITQTRAKQA 289

[Close]

BLAST of Carg25416 vs. TrEMBL
Match: tr|A0A0A0M2X1|A0A0A0M2X1_CUCSA (Signal recognition particle subunit SRP68 OS=Cucumis sativus OX=3659 GN=Csa_1G627500 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQDRNWD ALLNFKR+RAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDRNWDTALLNFKRARAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+QASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNLQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. TrEMBL
Match: tr|A0A1S3BNF0|A0A1S3BNF0_CUCME (Signal recognition particle subunit SRP68 OS=Cucumis melo OX=3656 GN=LOC103491982 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQD+NWD ALLNFKR+RAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDQNWDTALLNFKRARAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+QASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNLQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. TrEMBL
Match: tr|A0A1S3BP31|A0A1S3BP31_CUCME (Signal recognition particle subunit SRP68 OS=Cucumis melo OX=3656 GN=LOC103491982 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           MTGNLLFEQD+NWD ALLNFKR+RAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 155 MTGNLLFEQDQNWDTALLNFKRARAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 214

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           GKSN+QASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Sbjct: 215 GKSNLQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 254

[Close]

BLAST of Carg25416 vs. TrEMBL
Match: tr|A0A2I0JK01|A0A2I0JK01_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_023032 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.2e-44
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           M GNLLFEQD+NWDIAL+NFK +RAVYEELGK GDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 162 MKGNLLFEQDQNWDIALMNFKSARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKI 221

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G+SN+Q SE LHIGEMEGPALDLFKAKLEAVM+EARSQQA
Sbjct: 222 GESNLQTSEFLHIGEMEGPALDLFKAKLEAVMAEARSQQA 261

[Close]

BLAST of Carg25416 vs. TrEMBL
Match: tr|A0A218W074|A0A218W074_PUNGR (Signal recognition particle subunit SRP68 OS=Punica granatum OX=22663 GN=CDL15_Pgr009112 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.2e-44
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKI 60
           M GNLLFEQD+NWDIAL+NFK +RAVYEELGK GDLENQVLCRERVEELEPSIRYCLHKI
Sbjct: 128 MKGNLLFEQDQNWDIALMNFKSARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKI 187

Query: 61  GKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA 101
           G+SN+Q SE LHIGEMEGPALDLFKAKLEAVM+EARSQQA
Sbjct: 188 GESNLQTSEFLHIGEMEGPALDLFKAKLEAVMAEARSQQA 227

The following BLAST results are available for this feature:

BLAST of Carg25416 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933753.1	1.4e-48	100.00	signal recognition particle subunit SRP68-like isoform X2 [Cucurbita moschata]	[more]
XP_022933752.1	1.4e-48	100.00	signal recognition particle subunit SRP68-like isoform X1 [Cucurbita moschata]	[more]
XP_022965818.1	1.4e-48	100.00	signal recognition particle subunit SRP68-like isoform X2 [Cucurbita maxima]	[more]
XP_022965811.1	1.4e-48	100.00	signal recognition particle subunit SRP68-like isoform X1 [Cucurbita maxima]	[more]
XP_023531771.1	1.4e-48	100.00	signal recognition particle subunit SRP68-like isoform X1 [Cucurbita pepo subsp....	[more]

BLAST of Carg25416 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61970.1	4.9e-43	83.00	signal recognition particle-related / SRP-related	[more]

BLAST of Carg25416 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q00004\|SRP68_CANLF	9.0e-10	35.00	Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=S...	[more]
sp\|Q9UHB9\|SRP68_HUMAN	9.0e-10	35.00	Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 ...	[more]
sp\|Q8BMA6\|SRP68_MOUSE	1.2e-09	35.00	Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1...	[more]

BLAST of Carg25416 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M2X1\|A0A0A0M2X1_CUCSA	1.4e-47	97.00	Signal recognition particle subunit SRP68 OS=Cucumis sativus OX=3659 GN=Csa_1G62...	[more]
tr\|A0A1S3BNF0\|A0A1S3BNF0_CUCME	4.0e-47	96.00	Signal recognition particle subunit SRP68 OS=Cucumis melo OX=3656 GN=LOC10349198...	[more]
tr\|A0A1S3BP31\|A0A1S3BP31_CUCME	4.0e-47	96.00	Signal recognition particle subunit SRP68 OS=Cucumis melo OX=3656 GN=LOC10349198...	[more]
tr\|A0A2I0JK01\|A0A2I0JK01_PUNGR	9.2e-44	89.00	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_023032 PE=4 SV=1	[more]
tr\|A0A218W074\|A0A218W074_PUNGR	9.2e-44	89.00	Signal recognition particle subunit SRP68 OS=Punica granatum OX=22663 GN=CDL15_P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005786	signal recognition particle, endoplasmic reticulum targeting

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005047	signal recognition particle binding
GO:0008312	7S RNA binding
GO:0030942	endoplasmic reticulum signal peptide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR038253	SRP68_N_sf
IPR026258	SRP68

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0030942	endoplasmic reticulum signal peptide binding
molecular_function	GO:0005047	signal recognition particle binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25416-RA	Carg25416-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026258	Signal recognition particle subunit SRP68	PFAM	PF16969	SRP68	coord: 1..100 e-value: 2.2E-25 score: 89.6
IPR026258	Signal recognition particle subunit SRP68	PANTHER	PTHR12860	SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN	coord: 1..100
IPR038253	SRP68, N-terminal domain superfamily	GENE3D	G3DSA:1.10.3450.40		coord: 1..63 e-value: 5.3E-13 score: 51.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25416	Csa1G627500	Cucumber (Chinese Long) v2	carcuB0457
Carg25416	MELO3C015126	Melon (DHL92) v3.5.1	carmeB0432
Carg25416	ClCG03G012650	Watermelon (Charleston Gray)	carwcgB0417
Carg25416	CSPI01G30940	Wild cucumber (PI 183967)	carcpiB0462
Carg25416	CmaCh11G008830	Cucurbita maxima (Rimu)	carcmaB0590
Carg25416	CmaCh10G008960	Cucurbita maxima (Rimu)	carcmaB0589
Carg25416	CmoCh10G009330	Cucurbita moschata (Rifu)	carcmoB0574
Carg25416	CmoCh11G008920	Cucurbita moschata (Rifu)	carcmoB0575
Carg25416	Lsi06G005750	Bottle gourd (USVL1VR-Ls)	carlsiB385
Carg25416	Cp4.1LG18g01910	Cucurbita pepo (Zucchini)	carcpeB0595
Carg25416	CsGy1G030210	Cucumber (Gy14) v2	carcgybB0433
Carg25416	MELO3C015126.2	Melon (DHL92) v3.6.1	carmedB0434
Carg25416	CsaV3_1G043340	Cucumber (Chinese Long) v3	carcucB0458
Carg25416	Cla97C03G062930	Watermelon (97103) v2	carwmbB0448
Carg25416	Bhi02G001251	Wax gourd	carwgoB0510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None