Carg25402 (gene) Silver-seed gourd

Overview
NameCarg25402
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed RNA polymerase subunit beta'
LocationCucurbita_argyrosperma_scaffold_232 : 325874 .. 327030 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGTATTTACCACTTGAAGGTGAGTGTTTACTTCAGGACATTGTAAAGCTCATATTCTTGGCTGAGATCAAGAATTCGAGCATGGACGCGTAAGCTTTCTCTTGCTTCCGCTATTTTTCACGCAAGGAAGCCACGAGGACTGTTCTTTTGATCATAATTAACATTATGTTTTTACTGTACTCTAGGATCATTATGTGTTATGCTTTTTGCTGCCAGTTATAAGTGTAATTTGGTTTAAAGTACTCGTTTTTCGTAGTTCGACATGTAATTTTGGTCTAGGATTCAAATGTATCTCAGTCAGTTGAGCTTTTAGCCAGACTATTACCCAAATTCAGGAGGGTAGAAAACTGTAATGCATGCTCTGGGAATTTCCCATTTTGTGATTCTTTTGGTGATGGTAACTGTATAAACTCAACAGGCAAGTTTTGTGTTTTAAATTATTAGAATGGTTGCCTTATAATAAACCAAAATTTACTCTGTTCTGTTCATATATATCTGAAAGTAATATTTTTTATATACTTTTAAGTTATGTCTTTCTGGATTATGCCTAGTTTTAATATTTGATCCTTATGACTGAATGAAATTCAATGCCTCTATGATTTGTTGGCTTTTTTTCTTTTTTTTTTTTTCTTGTTATTTGGGAATAGAATTTGTAATGTGTTAGGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTAAAGAGGGAAGATTTTGAAATACTCTGCTTGGCAAACGGGTCGATTATTCAAAACATTCTGTGATTGTTGTAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG

mRNA sequence

ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG

Coding sequence (CDS)

ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG

Protein sequence

MCNLGSPSTEAVRSIPIPWNIRHHEHYTVDGMLHLLNLGTGEKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRKVL
Homology
[Close]
BLAST of Carg25402 vs. NCBI nr
Match: ERN02619.1 (hypothetical protein AMTR_s00390p00014170, partial [Amborella trichopoda])

HSP 1 Score: 86.3 bits (212), Expect = 9.1e-14
Identity = 51/97 (52.58%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHP 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG              +E L G  
Sbjct: 176 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE---------GRFRETLLGKR 235

Query: 102 MLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRKV 139
           +  + R+         ELLRVKF KK+ LYGKY RK+
Sbjct: 236 VDYSGRSV------IVELLRVKFEKKSRLYGKYFRKL 257

[Close]
BLAST of Carg25402 vs. NCBI nr
Match: AKR80887.1 (RNA polymerase beta (plastid) [Lophiola aurea])

HSP 1 Score: 79.7 bits (195), Expect = 8.5e-12
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +  R     L     + + K  +K P+  + L+
Sbjct: 385 VVGPSLSLHQCGLPQEIAIELF--QTFVIRRLIRQHLASNIGIAKSKIREKEPIVWEILQ 444

[Close]
BLAST of Carg25402 vs. NCBI nr
Match: YP_009338248.1 (RNA polymerase beta (chloroplast) [Pleurospermum camtschaticum] >ANK36343.1 RNA polymerase beta (chloroplast) [Pleurospermum camtschaticum])

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 330 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 389

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +        L     + + K  +KNP   + LR
Sbjct: 390 VVGPSLSLHQCGLPREIAIELF--QTFVIRSLIRQHLASNIGVAKSKIREKNPSVWEILR 449

[Close]
BLAST of Carg25402 vs. NCBI nr
Match: YP_009403475.1 (RNA polymerase beta' subunit (plastid) [Downingia elegans] >ASA34668.1 RNA polymerase beta' subunit (plastid) [Downingia elegans])

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 50/123 (40.65%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN + GQP RD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGVRGQPTRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP E+   L+  P ++  R   + L     + + K  +K P+  + LR
Sbjct: 385 VVGPSLSLHQCGLPRELAVELF-QPFVI-RRLIQEHLASNIGVAKRKIREKEPIIWEILR 444

[Close]
BLAST of Carg25402 vs. NCBI nr
Match: PHT94641.1 (DNA-directed RNA polymerase subunit beta' [Capsicum annuum])

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRDDHNKVYKSFSDV+EG                      
Sbjct: 342 EKLVQETVDTLLDNGIRGQPMRDDHNKVYKSFSDVIEGKEGRFHETLLGKRVDYSGCSVI 401

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +        L     + + K  +K P+  + L+
Sbjct: 402 VVGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQ 461

[Close]
BLAST of Carg25402 vs. TAIR10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.5e-14
Identity = 43/82 (52.44%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 99
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

[Close]
BLAST of Carg25402 vs. Swiss-Prot
Match: sp|A8W3B5|RPOC1_CUSEX (DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata OX=476139 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSD++EG                      
Sbjct: 332 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVI 391

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+  P ++ +      L     + + K  +K P+  + L+
Sbjct: 392 VVGPSLSLHQCGLPREIAIELF-QPFVIRD-LIKQHLASNIGVAKSKIREKEPIIWEILQ 451

[Close]
BLAST of Carg25402 vs. Swiss-Prot
Match: sp|Q6EW57|RPOC1_NYMAL (DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba OX=34301 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 51/123 (41.46%), Postives = 61/123 (49.59%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +        L     L + K  +K P+  + L+
Sbjct: 385 VVGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGLAKSKIREKEPIVWEILQ 444

[Close]
BLAST of Carg25402 vs. Swiss-Prot
Match: sp|Q589B9|RPOC1_SILLA (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia OX=37657 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 50/123 (40.65%), Postives = 61/123 (49.59%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 328 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 387

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLH+CGLP EI   L+     +        L     + + K  +K P+  K L+
Sbjct: 388 VVGPSLSLHRCGLPREIAIELF--QTFIIRGLIRQHLASNIGVAKSKIREKEPIIWKILQ 447

[Close]
BLAST of Carg25402 vs. Swiss-Prot
Match: sp|A6MMJ8|RPOC1_DIOEL (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes OX=145284 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 49/123 (39.84%), Postives = 62/123 (50.41%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPM+D HNKVYKSFSDV+EG                      
Sbjct: 328 EKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 387

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     L +      +     + + K  +K P+  + L+
Sbjct: 388 VVGPSLSLHQCGLPREIAIELF--QTFLIHGLIKQHVASNIGIAKSKIREKEPIVWEILQ 447

[Close]
BLAST of Carg25402 vs. Swiss-Prot
Match: sp|A0ZZ26|RPOC1_GOSBA (DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense OX=3634 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 52/126 (41.27%), Postives = 65/126 (51.59%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGRRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPM---LLNNRAFPDILLQTSELLRVKFGKKNPLYGK 140
               SLSLH+CGLP EI   L+   +   L+     P+I +  S     K  +K P+  +
Sbjct: 385 VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLAPNIGVAES-----KIREKGPIVWE 444

[Close]
BLAST of Carg25402 vs. TrEMBL
Match: tr|W1P4N9|W1P4N9_AMBTC (DNA-directed RNA polymerase subunit (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s00390p00014170 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.0e-14
Identity = 51/97 (52.58%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHP 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG              +E L G  
Sbjct: 176 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE---------GRFRETLLGKR 235

Query: 102 MLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRKV 139
           +  + R+         ELLRVKF KK+ LYGKY RK+
Sbjct: 236 VDYSGRSV------IVELLRVKFEKKSRLYGKYFRKL 257

[Close]
BLAST of Carg25402 vs. TrEMBL
Match: tr|A0A0K0VIC8|A0A0K0VIC8_9LILI (DNA-directed RNA polymerase subunit gamma OS=Lophiola aurea OX=119995 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.6e-12
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +  R     L     + + K  +K P+  + L+
Sbjct: 385 VVGPSLSLHQCGLPQEIAIELF--QTFVIRRLIRQHLASNIGIAKSKIREKEPIVWEILQ 444

[Close]
BLAST of Carg25402 vs. TrEMBL
Match: tr|A0A1L2ECF0|A0A1L2ECF0_9APIA (DNA-directed RNA polymerase subunit beta' OS=Pleurospermum camtschaticum OX=49565 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.6e-12
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 330 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 389

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +        L     + + K  +KNP   + LR
Sbjct: 390 VVGPSLSLHQCGLPREIAIELF--QTFVIRSLIRQHLASNIGVAKSKIREKNPSVWEILR 449

[Close]
BLAST of Carg25402 vs. TrEMBL
Match: tr|A0A2G3AK61|A0A2G3AK61_CAPAN (DNA-directed RNA polymerase subunit OS=Capsicum annuum OX=4072 GN=T459_02523 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.6e-12
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRDDHNKVYKSFSDV+EG                      
Sbjct: 342 EKLVQETVDTLLDNGIRGQPMRDDHNKVYKSFSDVIEGKEGRFHETLLGKRVDYSGCSVI 401

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +        L     + + K  +K P+  + L+
Sbjct: 402 VVGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQ 461

[Close]
BLAST of Carg25402 vs. TrEMBL
Match: tr|A0A1Z2QT92|A0A1Z2QT92_9ASTR (DNA-directed RNA polymerase subunit gamma OS=Downingia elegans OX=104522 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.6e-12
Identity = 50/123 (40.65%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN + GQP RD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGVRGQPTRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP E+   L+  P ++  R   + L     + + K  +K P+  + LR
Sbjct: 385 VVGPSLSLHQCGLPRELAVELF-QPFVI-RRLIQEHLASNIGVAKRKIREKEPIIWEILR 444

The following BLAST results are available for this feature:
BLAST of Carg25402 vs. NCBI nr
Match NameE-valueIdentityDescription
ERN02619.19.1e-1452.58hypothetical protein AMTR_s00390p00014170, partial [Amborella trichopoda][more]
AKR80887.18.5e-1241.46RNA polymerase beta (plastid) [Lophiola aurea][more]
YP_009338248.11.5e-1142.28RNA polymerase beta (chloroplast) [Pleurospermum camtschaticum] >ANK36343.1 RNA ... [more]
YP_009403475.11.5e-1140.65RNA polymerase beta' subunit (plastid) [Downingia elegans] >ASA34668.1 RNA polym... [more]
PHT94641.11.5e-1141.46DNA-directed RNA polymerase subunit beta' [Capsicum annuum][more]
BLAST of Carg25402 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00180.16.5e-1452.44DNA-directed RNA polymerase family protein[more]
BLAST of Carg25402 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A8W3B5|RPOC1_CUSEX1.1e-1340.65DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata OX=476139 GN=rpoC1... [more]
sp|Q6EW57|RPOC1_NYMAL1.4e-1341.46DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba OX=34301 GN=rpoC1 PE=... [more]
sp|Q589B9|RPOC1_SILLA2.4e-1340.65DNA-directed RNA polymerase subunit beta' OS=Silene latifolia OX=37657 GN=rpoC1 ... [more]
sp|A6MMJ8|RPOC1_DIOEL3.1e-1339.84DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes OX=145284 GN... [more]
sp|A0ZZ26|RPOC1_GOSBA3.1e-1341.27DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense OX=3634 GN=rpo... [more]
BLAST of Carg25402 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|W1P4N9|W1P4N9_AMBTC6.0e-1452.58DNA-directed RNA polymerase subunit (Fragment) OS=Amborella trichopoda OX=13333 ... [more]
tr|A0A0K0VIC8|A0A0K0VIC8_9LILI5.6e-1241.46DNA-directed RNA polymerase subunit gamma OS=Lophiola aurea OX=119995 GN=rpoC1 P... [more]
tr|A0A1L2ECF0|A0A1L2ECF0_9APIA9.6e-1242.28DNA-directed RNA polymerase subunit beta' OS=Pleurospermum camtschaticum OX=4956... [more]
tr|A0A2G3AK61|A0A2G3AK61_CAPAN9.6e-1241.46DNA-directed RNA polymerase subunit OS=Capsicum annuum OX=4072 GN=T459_02523 PE=... [more]
tr|A0A1Z2QT92|A0A1Z2QT92_9ASTR9.6e-1240.65DNA-directed RNA polymerase subunit gamma OS=Downingia elegans OX=104522 GN=rpoC... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25402-RACarg25402-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILYSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 42..105