Carg25367 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGAACCCGAACCAAGCTCACCGAGACGACGACGACGACGATTCATGGGAGATTAGGGCTTTCGCCGAAGACACTATGGGCACAACTTGGCCACCTAGGTTCTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCTTGGGTGGCCACATGAATGTTCATCGTCGCGACCGTGTACGTTTTCGCCACGAAAATCAACCCATCTCATCCTTGACATCGTCTTTCACGATCCCCGCCACCAATGTCGTCTACGATGGTGGTGGGGTTTGTTTCTTCTACCAATTACCAAATGAAAACAGCAATTTCCTCCACTCCATCTCTTTACACTCCGCTACCCCATATCCATCAAACAATCCGATTGCGTCGTCCATACCATCTTTAAAGTTGTCGGGAGAGCTCGGAGGAACATCGAGCTCCTCGTCTCACTGCAGTCACATGTCTAGCAAAGGAGATGAATCCTTGATATCAATTGATGATGGAGCTGAGAAGCTTGATCTAGAGCTGAGACTTGGACAAAGGCCATCTCCAGCTTGA ATGTGGAACCCGAACCAAGCTCACCGAGACGACGACGACGACGATTCATGGGAGATTAGGGCTTTCGCCGAAGACACTATGGGCACAACTTGGCCACCTAGGTTCTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCTTGGGTGGCCACATGAATGTTCATCGTCGCGACCGTGTACGTTTTCGCCACGAAAATCAACCCATCTCATCCTTGACATCGTCTTTCACGATCCCCGCCACCAATGTCGTCTACGATGGTGGTGGGGTTTGTTTCTTCTACCAATTACCAAATGAAAACAGCAATTTCCTCCACTCCATCTCTTTACACTCCGCTACCCCATATCCATCAAACAATCCGATTGCGTCGTCCATACCATCTTTAAAGTTGTCGGGAGAGCTCGGAGGAACATCGAGCTCCTCGTCTCACTGCAGTCACATGTCTAGCAAAGGAGATGAATCCTTGATATCAATTGATGATGGAGCTGAGAAGCTTGATCTAGAGCTGAGACTTGGACAAAGGCCATCTCCAGCTTGA ATGTGGAACCCGAACCAAGCTCACCGAGACGACGACGACGACGATTCATGGGAGATTAGGGCTTTCGCCGAAGACACTATGGGCACAACTTGGCCACCTAGGTTCTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCTTGGGTGGCCACATGAATGTTCATCGTCGCGACCGTGTACGTTTTCGCCACGAAAATCAACCCATCTCATCCTTGACATCGTCTTTCACGATCCCCGCCACCAATGTCGTCTACGATGGTGGTGGGGTTTGTTTCTTCTACCAATTACCAAATGAAAACAGCAATTTCCTCCACTCCATCTCTTTACACTCCGCTACCCCATATCCATCAAACAATCCGATTGCGTCGTCCATACCATCTTTAAAGTTGTCGGGAGAGCTCGGAGGAACATCGAGCTCCTCGTCTCACTGCAGTCACATGTCTAGCAAAGGAGATGAATCCTTGATATCAATTGATGATGGAGCTGAGAAGCTTGATCTAGAGCTGAGACTTGGACAAAGGCCATCTCCAGCTTGA MWNPNQAHRDDDDDDSWEIRAFAEDTMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRFRHENQPISSLTSSFTIPATNVVYDGGGVCFFYQLPNENSNFLHSISLHSATPYPSNNPIASSIPSLKLSGELGGTSSSSSHCSHMSSKGDESLISIDDGAEKLDLELRLGQRPSPA
BLAST of Carg25367 vs. NCBI nr
Match: XP_004148758.1 (PREDICTED: transcriptional regulator SUPERMAN [Cucumis sativus] >ADO15281.1 palmate-like pentafoliata 1 transcription factor, partial [Cucumis sativus] >KGN55773.1 hypothetical protein Csa_3G011750 [Cucumis sativus]) HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62 Identity = 135/194 (69.59%), Postives = 154/194 (79.38%), Query Frame = 0
BLAST of Carg25367 vs. NCBI nr
Match: XP_008448698.1 (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]) HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60 Identity = 131/195 (67.18%), Postives = 150/195 (76.92%), Query Frame = 0
BLAST of Carg25367 vs. NCBI nr
Match: XP_022145395.1 (zinc finger protein 11-like [Momordica charantia]) HSP 1 Score: 217.6 bits (553), Expect = 3.4e-53 Identity = 126/197 (63.96%), Postives = 141/197 (71.57%), Query Frame = 0
BLAST of Carg25367 vs. NCBI nr
Match: XP_004301687.1 (PREDICTED: transcriptional regulator SUPERMAN [Fragaria vesca subsp. vesca]) HSP 1 Score: 159.8 bits (403), Expect = 8.5e-36 Identity = 102/212 (48.11%), Postives = 124/212 (58.49%), Query Frame = 0
BLAST of Carg25367 vs. NCBI nr
Match: GAV69097.1 (zf-C2H2_6 domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35 Identity = 99/211 (46.92%), Postives = 120/211 (56.87%), Query Frame = 0
BLAST of Carg25367 vs. TAIR10
Match: AT4G17810.1 (C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 122.5 bits (306), Expect = 2.7e-28 Identity = 79/206 (38.35%), Postives = 109/206 (52.91%), Query Frame = 0
BLAST of Carg25367 vs. TAIR10
Match: AT2G37740.1 (zinc-finger protein 10) HSP 1 Score: 85.5 bits (210), Expect = 3.7e-17 Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0
BLAST of Carg25367 vs. TAIR10
Match: AT5G06070.1 (C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 77.4 bits (189), Expect = 1.0e-14 Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Carg25367 vs. TAIR10
Match: AT2G42410.1 (zinc finger protein 11) HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 0
BLAST of Carg25367 vs. TAIR10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11 Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0
BLAST of Carg25367 vs. Swiss-Prot
Match: sp|O80942|ZFP10_ARATH (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 6.6e-16 Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0
BLAST of Carg25367 vs. Swiss-Prot
Match: sp|Q9LHS9|RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2) HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13 Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Carg25367 vs. Swiss-Prot
Match: sp|Q9SLB8|ZFP11_ARATH (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 0
BLAST of Carg25367 vs. Swiss-Prot
Match: sp|Q38895|SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10 Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0
BLAST of Carg25367 vs. Swiss-Prot
Match: sp|Q39266|ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 6.2e-06 Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of Carg25367 vs. TrEMBL
Match: tr|E2IBP9|E2IBP9_CUCSA (Palmate-like pentafoliata 1 transcription factor (Fragment) OS=Cucumis sativus OX=3659 GN=PALM1 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 9.2e-63 Identity = 135/194 (69.59%), Postives = 154/194 (79.38%), Query Frame = 0
BLAST of Carg25367 vs. TrEMBL
Match: tr|A0A1S3BKB5|A0A1S3BKB5_CUCME (transcriptional regulator SUPERMAN-like OS=Cucumis melo OX=3656 GN=LOC103490792 PE=4 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 2.5e-60 Identity = 131/195 (67.18%), Postives = 150/195 (76.92%), Query Frame = 0
BLAST of Carg25367 vs. TrEMBL
Match: tr|A0A2N9EKI1|A0A2N9EKI1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3195 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40 Identity = 108/206 (52.43%), Postives = 127/206 (61.65%), Query Frame = 0
BLAST of Carg25367 vs. TrEMBL
Match: tr|A0A1Q3BM42|A0A1Q3BM42_CEPFO (Zf-C2H2_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12598 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 7.3e-36 Identity = 99/211 (46.92%), Postives = 120/211 (56.87%), Query Frame = 0
BLAST of Carg25367 vs. TrEMBL
Match: tr|A0A2I4DWF2|A0A2I4DWF2_9ROSI (transcriptional regulator SUPERMAN-like OS=Juglans regia OX=51240 GN=LOC108984087 PE=4 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35 Identity = 98/200 (49.00%), Postives = 119/200 (59.50%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |