Carg25323 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25323
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tumor necrosis factor alpha-induced protein like
Location	Cucurbita_argyrosperma_scaffold_243 : 1252 .. 2614 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAGAGGAGTCGAACTCGCCGGTCTTCAGCAGCGGAGCTTCTGGAAACGCCACCGTCGACGCCACTTCCGGCCACCGATTCTCCAAAGTCAGCGATCTTCAACAGAAAAATTAACAGCAATGGAAACAAGTTTTCTTCACCAGAGAACACCAACATTGTGAAGAACAGAGTTCCCGCTGGTCTCTTCAAGTCGCCTTCTCGAAATGCTTCGAGTCTGAGCACTATATCTGATCTCAAGGATTTTGCGGCTTCACAACTCCTCGATCTCAAGCGCCACATTGATCATTCTCACTCGCAAATAATCAAAGATCATGAATCCTCAACCTCCCGCCTCGAAAAGCGATTTAAGGTATCCATCTCTTTCTTTTATGATTTTGACGATAAATGCGTGCTTCTGCATCTATTTTGTTATTTCTTTTTCTTTTTCTCTGCGATTTCCGTTTACTAGAATCCATAACTCAAAATTTCTCTGCGTTCCGAGAACACGATCTAGATCAGAGGCAGTTGTTTTATTTAAATCATTCTGTAATTAATTTAAAAATTACTGGAAATTTGCATACACCGTTTCGACACCGAATGTCCCATCCGAAAGTTGTGAAAGTTGAAGGCAGCAGAGAACACTATAGTTCTCTGTTTTCGTGCTAAACACGCTACACTGCCGTTGTATAAACCAAGATCTCTTTGGTGCCTTCTTAACCATGTTTTTAAGCTCTTATACACGAGTATAAGTTGAAAACTCAAGTTAAATGAAAAACTAAAAGTCTGCACTAGTGAAATTTTGGCCTCGAAGAAATGTCAATTGAACAGATAGTTTGTATGCTTTTACTGAAATTCAGAGCACACACGAGGAACGGTGAGGACTTAAATTATCGATTTAAATAGGTCGACATAAAGAGTTACGTTCGATCGATTTCAACTAATAATACTTATAAGATCTCCTATGTGTACTGATTAACTTTGTTGAGACGAGCTAGGATATAAGATTATGTGCTTAATCGCAATTACGGAAAAATATTGATTAGAAGTATTTTATTGATTCCTTTATGATTCTTGATTTGTAACGGGAAGAATGATCTTGGATTGTCATATCGATTAATTTAACAGAGTTCAAAGCCAAGCATGCCAGAAATGAATGGATGAAGACAGAGAAGCGAGTTATAAGAAGATGTCTCAAAGAATTTATGAAAGTCAGGAGCAATGAAGGTGTTGTTAATGAAAAATACAACTTTACAAAAAATGTTTTCCATGATCATTATTTTTTCTGTGCCAAAAAGTCTTACTCTTGTTTCATTGTCTACTATTAGGCTTTATTGAAGTTCTTGCCACATGAACACACGGAGATGTGCATTCTCGAG

mRNA sequence

ATGGGGAAGAAGAGGAGTCGAACTCGCCGGTCTTCAGCAGCGGAGCTTCTGGAAACGCCACCGTCGACGCCACTTCCGGCCACCGATTCTCCAAAGTCAGCGATCTTCAACAGAAAAATTAACAGCAATGGAAACAAGTTTTCTTCACCAGAGAACACCAACATTGTGAAGAACAGAGTTCCCGCTGGTCTCTTCAAGTCGCCTTCTCGAAATGCTTCGAGTCTGAGCACTATATCTGATCTCAAGGATTTTGCGGCTTCACAACTCCTCGATCTCAAGCGCCACATTGATCATTCTCACTCGCAAATAATCAAAGATCATGAATCCTCAACCTCCCGCCTCGAAAAGCGATTTAAGGCTTTATTGAAGTTCTTGCCACATGAACACACGGAGATGTGCATTCTCGAG

Coding sequence (CDS)

ATGGGGAAGAAGAGGAGTCGAACTCGCCGGTCTTCAGCAGCGGAGCTTCTGGAAACGCCACCGTCGACGCCACTTCCGGCCACCGATTCTCCAAAGTCAGCGATCTTCAACAGAAAAATTAACAGCAATGGAAACAAGTTTTCTTCACCAGAGAACACCAACATTGTGAAGAACAGAGTTCCCGCTGGTCTCTTCAAGTCGCCTTCTCGAAATGCTTCGAGTCTGAGCACTATATCTGATCTCAAGGATTTTGCGGCTTCACAACTCCTCGATCTCAAGCGCCACATTGATCATTCTCACTCGCAAATAATCAAAGATCATGAATCCTCAACCTCCCGCCTCGAAAAGCGATTTAAGGCTTTATTGAAGTTCTTGCCACATGAACACACGGAGATGTGCATTCTCGAG

Protein sequence

MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFKALLKFLPHEHTEMCILE

Homology

[Close]

BLAST of Carg25323 vs. NCBI nr
Match: XP_022963851.1 (uncharacterized protein LOC111464038 isoform X2 [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
           MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV
Sbjct: 1   MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60

Query: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 120
           PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK
Sbjct: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 119

[Close]

BLAST of Carg25323 vs. NCBI nr
Match: XP_022963849.1 (uncharacterized protein LOC111464038 isoform X1 [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
           MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV
Sbjct: 1   MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60

Query: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 120
           PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK
Sbjct: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 119

[Close]

BLAST of Carg25323 vs. NCBI nr
Match: XP_022967652.1 (uncharacterized protein LOC111467096 [Cucurbita maxima] >XP_023511532.1 uncharacterized protein LOC111776334 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 6.3e-52
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
           MGKKRSRTRRSSAAELLETPPS    ATDSPKSAIFNRKINSNGNKFSSPENTNIVKNR 
Sbjct: 1   MGKKRSRTRRSSAAELLETPPSXXXXATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRA 60

Query: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 120
           PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK
Sbjct: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 119

[Close]

BLAST of Carg25323 vs. NCBI nr
Match: XP_023532951.1 (uncharacterized protein LOC111794964 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 94/119 (78.99%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
           MGK   RTRRSSAAELLETPP TP  ATDSPKSAIF+RKINSN +KFSSPENTN  KNRV
Sbjct: 1   MGKNGDRTRRSSAAELLETPPLTPPSATDSPKSAIFSRKINSNVSKFSSPENTNTAKNRV 60

Query: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 120
            A LFKS SRN SSLSTISDLKD A+SQL DLKR +DHSHSQI++D ESS SRL+KRFK
Sbjct: 61  AADLFKSFSRNISSLSTISDLKDLASSQLHDLKRLVDHSHSQIVEDLESSNSRLQKRFK 119

[Close]

BLAST of Carg25323 vs. NCBI nr
Match: XP_022995633.1 (uncharacterized protein LOC111491109 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
           MGK   RTRRS AAELLETPP TP  ATDSPKSAIF+RKIN N +KF SPENTN  KNRV
Sbjct: 1   MGKNGDRTRRSLAAELLETPPLTPPSATDSPKSAIFSRKINGNVSKFPSPENTNTAKNRV 60

Query: 61  PAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 120
            AGLFKS SRN SSLSTISDLKD A+SQL DLKR  DHSHSQI++D ESS SRL+KRFK
Sbjct: 61  AAGLFKSSSRNISSLSTISDLKDLASSQLHDLKRLFDHSHSQIVEDLESSNSRLQKRFK 119

[Close]

BLAST of Carg25323 vs. TrEMBL
Match: tr|A0A0A0LCH5|A0A0A0LCH5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G636950 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.9e-29
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
          MGKKR  TRRSSAAELLETPP TP PATDSPKSAIFNRK+NS G K SSPENTN+ KN+V
Sbjct: 1  MGKKRGGTRRSSAAELLETPPLTPXPATDSPKSAIFNRKMNSIGCKLSSPENTNLAKNKV 60

Query: 61 PAGLFKSPSRNASSLSTISDLKDFAASQL 90
          PAGLFKS  RNASSLS+ISDLKDFA+SQL
Sbjct: 61 PAGLFKSSPRNASSLSSISDLKDFASSQL 89

[Close]

BLAST of Carg25323 vs. TrEMBL
Match: tr|A0A1S3CDQ6|A0A1S3CDQ6_CUCME (uncharacterized protein LOC103499240 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499240 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
          MGKKR  TRRSSAAELLETPP     ATDSPKSAIFNRK NS G KFSSPENTNI KN+V
Sbjct: 1  MGKKRGGTRRSSAAELLETPPLXXXXATDSPKSAIFNRKRNSIGCKFSSPENTNIAKNKV 60

Query: 61 PAGLFKSPSRNASSLSTISDLKDFAAS 88
          PAGLFKS  RNASSLS+ISDLKDFA+S
Sbjct: 61 PAGLFKSSPRNASSLSSISDLKDFASS 87

[Close]

BLAST of Carg25323 vs. TrEMBL
Match: tr|A0A1S3CCJ9|A0A1S3CCJ9_CUCME (uncharacterized protein LOC103499240 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499240 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MGKKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRV 60
          MGKKR  TRRSSAAELLETPP     ATDSPKSAIFNRK NS G KFSSPENTNI KN+V
Sbjct: 1  MGKKRGGTRRSSAAELLETPPLXXXXATDSPKSAIFNRKRNSIGCKFSSPENTNIAKNKV 60

Query: 61 PAGLFKSPSRNASSLSTISDLKDFAAS 88
          PAGLFKS  RNASSLS+ISDLKDFA+S
Sbjct: 61 PAGLFKSSPRNASSLSSISDLKDFASS 87

[Close]

BLAST of Carg25323 vs. TrEMBL
Match: tr|A0A1S3ZZE3|A0A1S3ZZE3_TOBAC (uncharacterized protein LOC107792138 OS=Nicotiana tabacum OX=4097 GN=LOC107792138 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 0


Query: 3   KKRSR-TRRSSAAELLETPPSTPLPA-----TDSPKSAIFN-------------RKINSN 62
           KKRSR TR+SSAA+ L TPP+T   +     ++SPK  +FN             +K+ + 
Sbjct: 2   KKRSRSTRKSSAADFLSTPPATSAASPVQSMSESPKPFVFNFNTFNATPTSSSKKKLRTT 61

Query: 63  GNK---FSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSH 120
           G K    SSPE         PAG   SP+ +  +L +I+DLK+FA+SQL  +KR I+ SH
Sbjct: 62  GKKSFNISSPEQLK------PAG---SPA-SVKNLKSIADLKEFASSQLDSVKRQIERSH 121

[Close]

BLAST of Carg25323 vs. TrEMBL
Match: tr|A0A1S3VN06|A0A1S3VN06_VIGRR (uncharacterized protein LOC106776712 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776712 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 48/117 (41.03%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 3   KKRSRTRRSSAAELLETPPSTPLPATDSPKSAIFNRKINSNGNKFSSPENTNIVKNRVPA 62
           KK  +  +S+ A+LL+TP     P  DSP  AIF R             +T+    +V  
Sbjct: 2   KKTGKKTKSTVADLLKTPSPVASPEADSP--AIFTR-----------TASTSKRAKKVTL 61

Query: 63  GLFKSPSRNASSLSTISDLKDFAASQLLDLKRHIDHSHSQIIKDHESSTSRLEKRFK 120
               SP R+  + S ISDL++F +S + DLKR ID+SHS+ +KD E+S SRL KRFK
Sbjct: 62  ATSSSPPRSHRAPSNISDLRNFTSSGVDDLKRRIDYSHSEFLKDLEASNSRLHKRFK 105

The following BLAST results are available for this feature:

BLAST of Carg25323 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963851.1	1.6e-55	100.00	uncharacterized protein LOC111464038 isoform X2 [Cucurbita moschata]	[more]
XP_022963849.1	1.6e-55	100.00	uncharacterized protein LOC111464038 isoform X1 [Cucurbita moschata]	[more]
XP_022967652.1	6.3e-52	95.80	uncharacterized protein LOC111467096 [Cucurbita maxima] >XP_023511532.1 uncharac...	[more]
XP_023532951.1	2.3e-38	78.99	uncharacterized protein LOC111794964 [Cucurbita pepo subsp. pepo]	[more]
XP_022995633.1	2.0e-37	77.31	uncharacterized protein LOC111491109 [Cucurbita maxima]	[more]

BLAST of Carg25323 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25323 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25323 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCH5\|A0A0A0LCH5_CUCSA	2.9e-29	83.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G636950 PE=4 SV=1	[more]
tr\|A0A1S3CDQ6\|A0A1S3CDQ6_CUCME	3.9e-26	81.61	uncharacterized protein LOC103499240 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CCJ9\|A0A1S3CCJ9_CUCME	3.9e-26	81.61	uncharacterized protein LOC103499240 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3ZZE3\|A0A1S3ZZE3_TOBAC	5.2e-10	42.45	uncharacterized protein LOC107792138 OS=Nicotiana tabacum OX=4097 GN=LOC10779213...	[more]
tr\|A0A1S3VN06\|A0A1S3VN06_VIGRR	5.7e-09	41.03	uncharacterized protein LOC106776712 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25323-RA	Carg25323-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 135..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..53
None	No IPR available	PANTHER	PTHR37371	FAMILY NOT NAMED	coord: 1..119
None	No IPR available	PANTHER	PTHR37371:SF1	SUBFAMILY NOT NAMED	coord: 1..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25323	Csa3G636950	Cucumber (Chinese Long) v2	carcuB0088
Carg25323	MELO3C022754	Melon (DHL92) v3.5.1	carmeB0078
Carg25323	ClCG07G002370	Watermelon (Charleston Gray)	carwcgB0078
Carg25323	CSPI03G27930	Wild cucumber (PI 183967)	carcpiB0092
Carg25323	Cucsa.149870	Cucumber (Gy14) v1	carcgyB0090
Carg25323	CmaCh02G016500	Cucurbita maxima (Rimu)	carcmaB0103
Carg25323	CmoCh02G016980	Cucurbita moschata (Rifu)	carcmoB0111
Carg25323	Cp4.1LG15g01540	Cucurbita pepo (Zucchini)	carcpeB0114
Carg25323	Cp4.1LG05g00340	Cucurbita pepo (Zucchini)	carcpeB0115
Carg25323	CsGy3G025960	Cucumber (Gy14) v2	carcgybB0088
Carg25323	MELO3C022754.2	Melon (DHL92) v3.6.1	carmedB0079
Carg25323	CsaV3_3G030320	Cucumber (Chinese Long) v3	carcucB0095
Carg25323	Cla97C07G130670	Watermelon (97103) v2	carwmbB0075

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25323	Carg08876	Silver-seed gourd	carcarB091

The following block(s) are covering this gene:

None