Carg25317 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25317
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DDB1- and CUL4-associated factor 7 homolog
Location	Cucurbita_argyrosperma_scaffold_265 : 126397 .. 127437 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCAAACAGTGAGGCCAACCAAGATGGCTCCGACGAGCAGCAGAAGCGGTCTGAGATCTATACCTATGAGGCGCCATGGCACATCTACGCGATGAACTGGAGCGTCCGGCGAGACAAGAAGTACCGGTTGGCAATCGCTAGTCTTCTGGAGCAGTATCCCAACAGGGTGGAGATTGTCCAGCTTGATGATTCCAGCGGCGAGATCCGCTCCGACCCTAACCTCTCCTTTGAGCATCCCTATCCTCCCACCAAGACCATCTTCATTCCCGACAAGGAGTGCCAGCGCCCTGATCTTCTCGCCACTTCCAGCGATTTTCTCCGCGTATGGCGCATCTCAGACGATCCTTCATCTGTGGAGCTCAAGAGTCTTCTTAATGGCAACAAGAATAGCGAGTTTTGTGGCCCTCTAACCTCCTTTGACTGGAACGATGCTGAGCCAAAGCGTATCGGGACCTCCAGTATCGACACGACCTGCACCATTTGGGATATTGAACGCGAGACCGTCGACACGCAACTTATCGCTCATGATAAGGAGGTTTATGACATCGCTTGGGGCGGTGTTGGTGTATTTGCTTCCGTTTCCGCCGATGGTTCTGTCCGCGTCTTCGATTTGCGTGACAAGGAGCACTCTACCATCATCTACGAGAGTTCTGAGCCTGACACTCCATTGGTTCGGCTAGGCTGGAACAAGCAGGACCCGAGATATATGGCCACGATTATCATGGACAGCGCCAAGGTTGTCGTGCTTGACATTCGCTTCCCGACGCTCCCCGTCGTCGAGTTACAGAGGCACCAAGCTAGTGCGAACGCCATTGCGTGGGCGCCTCATAGTTCTTGCCACATTTGCACTGCAGGGGATGATTCTCAGGCCTTGATTTGGGATTTGTCGTCCATGGGCCAACCAGTCGAAGGTGGCCTCGATCCCATTCTTGCCTACACCGCTGGAGCAGAAATCGAGCAGCTGCAATGGTCCTCTTCCCAGCCGGACTGGGTTGCGATTGCCTTTTCCACCAAGCTTCAGATTCTGAGGGTATGA

mRNA sequence

ATGGGTGCAAACAGTGAGGCCAACCAAGATGGCTCCGACGAGCAGCAGAAGCGGTCTGAGATCTATACCTATGAGGCGCCATGGCACATCTACGCGATGAACTGGAGCGTCCGGCGAGACAAGAAGTACCGGTTGGCAATCGCTAGTCTTCTGGAGCAGTATCCCAACAGGGTGGAGATTGTCCAGCTTGATGATTCCAGCGGCGAGATCCGCTCCGACCCTAACCTCTCCTTTGAGCATCCCTATCCTCCCACCAAGACCATCTTCATTCCCGACAAGGAGTGCCAGCGCCCTGATCTTCTCGCCACTTCCAGCGATTTTCTCCGCGTATGGCGCATCTCAGACGATCCTTCATCTGTGGAGCTCAAGAGTCTTCTTAATGGCAACAAGAATAGCGAGTTTTGTGGCCCTCTAACCTCCTTTGACTGGAACGATGCTGAGCCAAAGCGTATCGGGACCTCCAGTATCGACACGACCTGCACCATTTGGGATATTGAACGCGAGACCGTCGACACGCAACTTATCGCTCATGATAAGGAGGTTTATGACATCGCTTGGGGCGGTGTTGGTGTATTTGCTTCCGTTTCCGCCGATGGTTCTGTCCGCGTCTTCGATTTGCGTGACAAGGAGCACTCTACCATCATCTACGAGAGTTCTGAGCCTGACACTCCATTGGTTCGGCTAGGCTGGAACAAGCAGGACCCGAGATATATGGCCACGATTATCATGGACAGCGCCAAGGTTGTCGTGCTTGACATTCGCTTCCCGACGCTCCCCGTCGTCGAGTTACAGAGGCACCAAGCTAGTGCGAACGCCATTGCGTGGGCGCCTCATAGTTCTTGCCACATTTGCACTGCAGGGGATGATTCTCAGGCCTTGATTTGGGATTTGTCGTCCATGGGCCAACCAGTCGAAGGTGGCCTCGATCCCATTCTTGCCTACACCGCTGGAGCAGAAATCGAGCAGCTGCAATGGTCCTCTTCCCAGCCGGACTGGGTTGCGATTGCCTTTTCCACCAAGCTTCAGATTCTGAGGGTATGA

Coding sequence (CDS)

ATGGGTGCAAACAGTGAGGCCAACCAAGATGGCTCCGACGAGCAGCAGAAGCGGTCTGAGATCTATACCTATGAGGCGCCATGGCACATCTACGCGATGAACTGGAGCGTCCGGCGAGACAAGAAGTACCGGTTGGCAATCGCTAGTCTTCTGGAGCAGTATCCCAACAGGGTGGAGATTGTCCAGCTTGATGATTCCAGCGGCGAGATCCGCTCCGACCCTAACCTCTCCTTTGAGCATCCCTATCCTCCCACCAAGACCATCTTCATTCCCGACAAGGAGTGCCAGCGCCCTGATCTTCTCGCCACTTCCAGCGATTTTCTCCGCGTATGGCGCATCTCAGACGATCCTTCATCTGTGGAGCTCAAGAGTCTTCTTAATGGCAACAAGAATAGCGAGTTTTGTGGCCCTCTAACCTCCTTTGACTGGAACGATGCTGAGCCAAAGCGTATCGGGACCTCCAGTATCGACACGACCTGCACCATTTGGGATATTGAACGCGAGACCGTCGACACGCAACTTATCGCTCATGATAAGGAGGTTTATGACATCGCTTGGGGCGGTGTTGGTGTATTTGCTTCCGTTTCCGCCGATGGTTCTGTCCGCGTCTTCGATTTGCGTGACAAGGAGCACTCTACCATCATCTACGAGAGTTCTGAGCCTGACACTCCATTGGTTCGGCTAGGCTGGAACAAGCAGGACCCGAGATATATGGCCACGATTATCATGGACAGCGCCAAGGTTGTCGTGCTTGACATTCGCTTCCCGACGCTCCCCGTCGTCGAGTTACAGAGGCACCAAGCTAGTGCGAACGCCATTGCGTGGGCGCCTCATAGTTCTTGCCACATTTGCACTGCAGGGGATGATTCTCAGGCCTTGATTTGGGATTTGTCGTCCATGGGCCAACCAGTCGAAGGTGGCCTCGATCCCATTCTTGCCTACACCGCTGGAGCAGAAATCGAGCAGCTGCAATGGTCCTCTTCCCAGCCGGACTGGGTTGCGATTGCCTTTTCCACCAAGCTTCAGATTCTGAGGGTATGA

Protein sequence

MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSVELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV

Homology

[Close]

BLAST of Carg25317 vs. NCBI nr
Match: XP_022928340.1 (WD repeat-containing protein LWD1 isoform X2 [Cucurbita moschata] >XP_022989681.1 WD repeat-containing protein LWD1 isoform X2 [Cucurbita maxima] >XP_023529991.1 WD repeat-containing protein LWD1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 709.9 bits (1831), Expect = 4.2e-201
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV
Sbjct: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. NCBI nr
Match: XP_022928339.1 (WD repeat-containing protein LWD1 isoform X1 [Cucurbita moschata] >XP_022989680.1 WD repeat-containing protein LWD1 isoform X1 [Cucurbita maxima] >XP_023529990.1 WD repeat-containing protein LWD1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 708.4 bits (1827), Expect = 1.2e-200
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV
Sbjct: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 346
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR 345

[Close]

BLAST of Carg25317 vs. NCBI nr
Match: XP_022148224.1 (WD repeat-containing protein LWD1 [Momordica charantia])

HSP 1 Score: 705.3 bits (1819), Expect = 1.0e-199
Identity = 343/346 (99.13%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGANS+ NQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGANSDPNQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV
Sbjct: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. NCBI nr
Match: XP_004145624.1 (PREDICTED: WD repeat-containing protein LWD1 [Cucumis sativus] >XP_016900859.1 PREDICTED: WD repeat-containing protein LWD1 [Cucumis melo] >KGN57691.1 hypothetical protein Csa_3G253490 [Cucumis sativus])

HSP 1 Score: 701.0 bits (1808), Expect = 1.9e-198
Identity = 341/346 (98.55%), Postives = 343/346 (99.13%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGA+S+ NQD SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGASSDPNQDASDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV
Sbjct: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. NCBI nr
Match: XP_023529099.1 (WD repeat-containing protein LWD1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 699.5 bits (1804), Expect = 5.7e-198
Identity = 341/346 (98.55%), Postives = 342/346 (98.84%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGANS+AN D SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGANSDANPDASDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDD SSV
Sbjct: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDSSSV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. TAIR10
Match: AT1G12910.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 667.9 bits (1722), Expect = 3.3e-192
Identity = 323/346 (93.35%), Postives = 333/346 (96.24%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MG +S+  QDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAI SLLEQYPNRVEI
Sbjct: 1   MGTSSDPIQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLD+S+GEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLR+WRI+DD S V
Sbjct: 61  VQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKS LN NKNSEFCGPLTSFDWN+AEP+RIGTSS DTTCTIWDIERE VDTQLIAHDKE
Sbjct: 121 ELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           V+DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFP LPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWD+SSM
Sbjct: 241 IIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQ VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQHVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. TAIR10
Match: AT3G26640.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 627.9 bits (1618), Expect = 3.8e-180
Identity = 302/346 (87.28%), Postives = 321/346 (92.77%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           M  +S+  Q+GS+EQ KRSEIYTYEAPW IYAMNWS+RRDKKYRLAI SL+EQYPNRVEI
Sbjct: 1   MVTSSDQIQNGSEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLD+S+GEIRSDPNL FEHPYPPTKT FIPDKECQRPDLLATSSDFLR+WRISDD S V
Sbjct: 61  VQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKS L+ +KNSEF GP+TSFDWN+AEP+RIGTSSIDTTCTIWDIERE VDTQLIAHDKE
Sbjct: 121 ELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVS DGSVRVFDLRDKEHSTIIYES EP TPLVRL WNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           +IM SAK+VVLDIRFP LPVVELQRHQAS NAIAWAPHSS HIC+AGDDSQALIWD+SSM
Sbjct: 241 VIMGSAKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQ VEGGLDPILAYTAGAE+EQLQWSSSQPDWVAIAFS KLQILRV
Sbjct: 301 GQHVEGGLDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346

[Close]

BLAST of Carg25317 vs. TAIR10
Match: AT5G24520.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 449.5 bits (1155), Expect = 1.9e-126
Identity = 217/338 (64.20%), Postives = 265/338 (78.40%), Query Frame = 0


Query: 13  DEQQKRSEIYTYEAPWHIYAMNW-SVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIR 72
           D   +     TY++P+ +YAM + S+R    +R+A+ S LE Y NR++I+  D  S  ++
Sbjct: 7   DSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVK 66

Query: 73  SDPNLSFEHPYPPTKTIFIPDKECQRP---DLLATSSDFLRVWRISDDPSSVELKSLLNG 132
             PNLSFEHPYPPTK +F P    +RP   DLLA+S DFLR+W I++D S+VE  S+LN 
Sbjct: 67  PLPNLSFEHPYPPTKLMFSP-PSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNN 126

Query: 133 NKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGG 192
           +K SEFC PLTSFDWND EPKR+GT SIDTTCTIWDIE+  V+TQLIAHDKEV+DIAWG 
Sbjct: 127 SKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGE 186

Query: 193 VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 252
             VFASVSADGSVR+FDLRDKEHSTIIYES +PDTPL+RL WNKQD RYMATI+MDS KV
Sbjct: 187 ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKV 246

Query: 253 VVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL 312
           V+LDIR PT+PV EL+RHQAS NAIAWAP S  HIC+ GDD+QALIW+L ++  P   G+
Sbjct: 247 VILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWELPTVAGP--NGI 306

Query: 313 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           DP+  Y+AG+EI QLQWSSSQPDW+ IAF+ K+Q+LRV
Sbjct: 307 DPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341

[Close]

BLAST of Carg25317 vs. TAIR10
Match: AT3G15354.1 (SPA1-related 3)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-07
Identity = 49/229 (21.40%), Postives = 95/229 (41.48%), Query Frame = 0


Query: 121 ELKSLLNGNKNSEF-------CGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQ 180
           E  S++N N++  +          L+S  WN     +I +S+ D    IWD+ R  + T+
Sbjct: 562 ECNSIVNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASSNFDGVVQIWDVARSQLVTE 621

Query: 181 LIAHDKEVY--DIAWGGVGVFASVSADGS-VRVFDLRDKEHSTIIYESSEPDTPLVRLGW 240
           +  H K V+  DI+     + AS S DG+ V +  ++ K +   +   S+       L +
Sbjct: 622 MKEHKKRVWSIDISSADPTLLASGSDDGTGVSIGTIKTKANVCCVQFPSDSGR---SLAF 681

Query: 241 NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDS 300
              D            KV   D+R P +P+  +  H  + + + +   S+  + ++  D+
Sbjct: 682 GSAD-----------HKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSST--LVSSSTDN 741

Query: 301 QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST 340
              +WDLS     +     P+ ++T    ++     S    ++A    T
Sbjct: 742 TLKLWDLSMSASGINE--SPLHSFTGHTNLKNFVGLSVSDGYIATGSET 772

[Close]

BLAST of Carg25317 vs. Swiss-Prot
Match: sp|Q9LPV9|LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 6.0e-191
Identity = 323/346 (93.35%), Postives = 333/346 (96.24%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MG +S+  QDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAI SLLEQYPNRVEI
Sbjct: 1   MGTSSDPIQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLD+S+GEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLR+WRI+DD S V
Sbjct: 61  VQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKS LN NKNSEFCGPLTSFDWN+AEP+RIGTSS DTTCTIWDIERE VDTQLIAHDKE
Sbjct: 121 ELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           V+DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFP LPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWD+SSM
Sbjct: 241 IIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQ VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQHVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. Swiss-Prot
Match: sp|Q38960|LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana OX=3702 GN=LWD2 PE=2 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 6.8e-179
Identity = 302/346 (87.28%), Postives = 321/346 (92.77%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           M  +S+  Q+GS+EQ KRSEIYTYEAPW IYAMNWS+RRDKKYRLAI SL+EQYPNRVEI
Sbjct: 1   MVTSSDQIQNGSEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLD+S+GEIRSDPNL FEHPYPPTKT FIPDKECQRPDLLATSSDFLR+WRISDD S V
Sbjct: 61  VQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKS L+ +KNSEF GP+TSFDWN+AEP+RIGTSSIDTTCTIWDIERE VDTQLIAHDKE
Sbjct: 121 ELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVS DGSVRVFDLRDKEHSTIIYES EP TPLVRL WNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           +IM SAK+VVLDIRFP LPVVELQRHQAS NAIAWAPHSS HIC+AGDDSQALIWD+SSM
Sbjct: 241 VIMGSAKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQ VEGGLDPILAYTAGAE+EQLQWSSSQPDWVAIAFS KLQILRV
Sbjct: 301 GQHVEGGLDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346

[Close]

BLAST of Carg25317 vs. Swiss-Prot
Match: sp|Q9XGN1|TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana OX=3702 GN=TTG1 PE=1 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 3.3e-125
Identity = 217/338 (64.20%), Postives = 265/338 (78.40%), Query Frame = 0


Query: 13  DEQQKRSEIYTYEAPWHIYAMNW-SVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIR 72
           D   +     TY++P+ +YAM + S+R    +R+A+ S LE Y NR++I+  D  S  ++
Sbjct: 7   DSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVK 66

Query: 73  SDPNLSFEHPYPPTKTIFIPDKECQRP---DLLATSSDFLRVWRISDDPSSVELKSLLNG 132
             PNLSFEHPYPPTK +F P    +RP   DLLA+S DFLR+W I++D S+VE  S+LN 
Sbjct: 67  PLPNLSFEHPYPPTKLMFSP-PSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNN 126

Query: 133 NKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGG 192
           +K SEFC PLTSFDWND EPKR+GT SIDTTCTIWDIE+  V+TQLIAHDKEV+DIAWG 
Sbjct: 127 SKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGE 186

Query: 193 VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV 252
             VFASVSADGSVR+FDLRDKEHSTIIYES +PDTPL+RL WNKQD RYMATI+MDS KV
Sbjct: 187 ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKV 246

Query: 253 VVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL 312
           V+LDIR PT+PV EL+RHQAS NAIAWAP S  HIC+ GDD+QALIW+L ++  P   G+
Sbjct: 247 VILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWELPTVAGP--NGI 306

Query: 313 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           DP+  Y+AG+EI QLQWSSSQPDW+ IAF+ K+Q+LRV
Sbjct: 307 DPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341

[Close]

BLAST of Carg25317 vs. Swiss-Prot
Match: sp|Q552R1|DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr68 PE=3 SV=2)

HSP 1 Score: 409.5 bits (1051), Expect = 3.8e-113
Identity = 197/331 (59.52%), Postives = 250/331 (75.53%), Query Frame = 0


Query: 17  KRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIRSDPNL 76
           ++  IYTY +PW IY ++WS R ++ +RLAI S LE Y NRV+++QL++ + +   +   
Sbjct: 2   EKKRIYTYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQF--EVVC 61

Query: 77  SFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSVELKSLLNGNKNSEFCG 136
            FEHPYPPTK ++IPDK   RPDLLAT+ D+LR+W +  +  S++LKSLL  N  SEFC 
Sbjct: 62  GFEHPYPPTKCMWIPDKNSNRPDLLATTGDYLRLWEVGSNQRSIKLKSLLT-NVISEFCA 121

Query: 137 PLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWG-GVGVFASV 196
           PL+SFDWN+ +P  + TSSIDTTCTIW+IE     TQLIAHDKEV+DIA+  G  +FASV
Sbjct: 122 PLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASV 181

Query: 197 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF 256
            ADGS+R+FDLR+ EHSTIIYE+     PL+RL WNKQDP Y+ATI  DS KV++LDIR 
Sbjct: 182 GADGSLRMFDLRNLEHSTIIYETPS-FVPLLRLCWNKQDPNYLATIQQDSPKVIILDIRV 241

Query: 257 PTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT 316
           P++P  EL  H+++ N I+WAPHSSCHICT  DD QALIWDLSSM +P+E   DP+L Y 
Sbjct: 242 PSVPAAELVFHKSAVNGISWAPHSSCHICTVSDDKQALIWDLSSMPKPIE---DPLLTYN 301

Query: 317 AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           A AEI QL WSSSQPDW+AIAFS+ LQIL+V
Sbjct: 302 ALAEINQLSWSSSQPDWIAIAFSSHLQILKV 325

[Close]

BLAST of Carg25317 vs. Swiss-Prot
Match: sp|P61962|DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens OX=9606 GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.5e-112
Identity = 202/345 (58.55%), Postives = 248/345 (71.88%), Query Frame = 0


Query: 17  KRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIRSDPNL 76
           KR EIY YEAPW +YAMNWSVR DK++RLA+ S +E+Y N+V++V LD+ S E       
Sbjct: 6   KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RN 65

Query: 77  SFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSVELKSLLNGNKNSEFCG 136
           +F+HPYP TK ++IPD +   PDLLATS D+LRVWR+ +  +   L+ LLN NKNS+FC 
Sbjct: 66  TFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGE--TETRLECLLNNNKNSDFCA 125

Query: 137 PLTSFDWNDAEPKRIGTSSIDTTCTIWDIERET-----------VDTQLIAHDKEVYDIA 196
           PLTSFDWN+ +P  +GTSSIDTTCTIW +E              V TQLIAHDKEVYDIA
Sbjct: 126 PLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIA 185

Query: 197 W----GGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI 256
           +    GG  +FASV ADGSVR+FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+
Sbjct: 186 FSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQDPNYLATM 245

Query: 257 IMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSMG 316
            MD  +VV+LD+R P  PV  L  H+A  N IAWAPHSSCHICTA DD QALIWD+  M 
Sbjct: 246 AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP 305

Query: 317 QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           + +E   DPILAYTA  EI  +QW+S+QPDW+AI ++  L+ILRV
Sbjct: 306 RAIE---DPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342

[Close]

BLAST of Carg25317 vs. TrEMBL
Match: tr|A0A1S4DXZ4|A0A1S4DXZ4_CUCME (WD repeat-containing protein LWD1 OS=Cucumis melo OX=3656 GN=LOC103491692 PE=4 SV=1)

HSP 1 Score: 701.0 bits (1808), Expect = 1.3e-198
Identity = 341/346 (98.55%), Postives = 343/346 (99.13%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGA+S+ NQD SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGASSDPNQDASDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV
Sbjct: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. TrEMBL
Match: tr|A0A0A0LCB1|A0A0A0LCB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253490 PE=4 SV=1)

HSP 1 Score: 701.0 bits (1808), Expect = 1.3e-198
Identity = 341/346 (98.55%), Postives = 343/346 (99.13%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGA+S+ NQD SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGASSDPNQDASDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV
Sbjct: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. TrEMBL
Match: tr|B9IA35|B9IA35_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G140700v3 PE=4 SV=1)

HSP 1 Score: 685.3 bits (1767), Expect = 7.3e-194
Identity = 330/346 (95.38%), Postives = 340/346 (98.27%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGA+S+ NQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
Sbjct: 1   MGASSDPNQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDS+GEIRSDPNLSFEHPYPPTKTIFIPDKECQ+PDLLATSSDFLRVWRI+D+   V
Sbjct: 61  VQLDDSNGEIRSDPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRINDEQPRV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           ELKSLLNGNKNSEFCGPLTSFDWN+AEP+RIGTSSIDTTCTIWDIE+ETVDTQLIAHDKE
Sbjct: 121 ELKSLLNGNKNSEFCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRH AS NA+AWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHHASVNAVAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. TrEMBL
Match: tr|A0A1R3JV01|A0A1R3JV01_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04207 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 9.5e-194
Identity = 331/346 (95.66%), Postives = 340/346 (98.27%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGA S+ N +GSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNR+EI
Sbjct: 1   MGAISDPNPEGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRLEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDS+GEIRSDPNLSF+HPYPPTKTIFIPDKECQ+PDLLATSSDFLR+WRISDD S V
Sbjct: 61  VQLDDSNGEIRSDPNLSFDHPYPPTKTIFIPDKECQKPDLLATSSDFLRIWRISDDHSRV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           +LKSLLNGNKNSEFCGPLTSFDWN+AEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 DLKSLLNGNKNSEFCGPLTSFDWNEAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

[Close]

BLAST of Carg25317 vs. TrEMBL
Match: tr|A0A1R3JWN7|A0A1R3JWN7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13412 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 9.5e-194
Identity = 331/346 (95.66%), Postives = 340/346 (98.27%), Query Frame = 0


Query: 1   MGANSEANQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI 60
           MGA S+ N +GSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNR+EI
Sbjct: 1   MGAISDPNPEGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRLEI 60

Query: 61  VQLDDSSGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSV 120
           VQLDDS+GEIRSDPNLSF+HPYPPTKTIFIPDKECQ+PDLLATSSDFLR+WRISDD S V
Sbjct: 61  VQLDDSNGEIRSDPNLSFDHPYPPTKTIFIPDKECQKPDLLATSSDFLRIWRISDDHSRV 120

Query: 121 ELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180
           +LKSLLNGNKNSEFCGPLTSFDWN+AEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE
Sbjct: 121 DLKSLLNGNKNSEFCGPLTSFDWNEAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKE 180

Query: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240
           VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT
Sbjct: 181 VYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240

Query: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASANAIAWAPHSSCHICTAGDDSQALIWDLSSM 300
           IIMDSAKVVVLDIRFPTLPVVELQRHQAS NAIAWAPHSSCHICTAGDDSQALIWDLSSM
Sbjct: 241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 300

Query: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 347
           GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct: 301 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346

The following BLAST results are available for this feature:

BLAST of Carg25317 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928340.1	4.2e-201	100.00	WD repeat-containing protein LWD1 isoform X2 [Cucurbita moschata] >XP_022989681....	[more]
XP_022928339.1	1.2e-200	100.00	WD repeat-containing protein LWD1 isoform X1 [Cucurbita moschata] >XP_022989680....	[more]
XP_022148224.1	1.0e-199	99.13	WD repeat-containing protein LWD1 [Momordica charantia]	[more]
XP_004145624.1	1.9e-198	98.55	PREDICTED: WD repeat-containing protein LWD1 [Cucumis sativus] >XP_016900859.1 P...	[more]
XP_023529099.1	5.7e-198	98.55	WD repeat-containing protein LWD1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25317 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12910.1	3.3e-192	93.35	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G26640.1	3.8e-180	87.28	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G24520.1	1.9e-126	64.20	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G15354.1	2.3e-07	21.40	SPA1-related 3	[more]

BLAST of Carg25317 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LPV9\|LWD1_ARATH	6.0e-191	93.35	WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 S...	[more]
sp\|Q38960\|LWD2_ARATH	6.8e-179	87.28	WD repeat-containing protein LWD2 OS=Arabidopsis thaliana OX=3702 GN=LWD2 PE=2 S...	[more]
sp\|Q9XGN1\|TTG1_ARATH	3.3e-125	64.20	Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana OX=3702 GN=TTG1 PE=1 ...	[more]
sp\|Q552R1\|DCAF7_DICDI	3.8e-113	59.52	DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum OX=44689 ...	[more]
sp\|P61962\|DCAF7_HUMAN	1.5e-112	58.55	DDB1- and CUL4-associated factor 7 OS=Homo sapiens OX=9606 GN=DCAF7 PE=1 SV=1	[more]

BLAST of Carg25317 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DXZ4\|A0A1S4DXZ4_CUCME	1.3e-198	98.55	WD repeat-containing protein LWD1 OS=Cucumis melo OX=3656 GN=LOC103491692 PE=4 S...	[more]
tr\|A0A0A0LCB1\|A0A0A0LCB1_CUCSA	1.3e-198	98.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253490 PE=4 SV=1	[more]
tr\|B9IA35\|B9IA35_POPTR	7.3e-194	95.38	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G140700v3 PE=...	[more]
tr\|A0A1R3JV01\|A0A1R3JV01_COCAP	9.5e-194	95.66	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04207 PE=4 ...	[more]
tr\|A0A1R3JWN7\|A0A1R3JWN7_9ROSI	9.5e-194	95.66	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13412 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25317-RA	Carg25317-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 167..205 e-value: 2.6E-4 score: 30.4 coord: 119..164 e-value: 0.57 score: 18.5 coord: 256..296 e-value: 6.6E-5 score: 32.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 174..205 e-value: 0.11 score: 13.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 263..299 score: 9.974
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 10..346 e-value: 4.5E-39 score: 136.6
None	No IPR available	PANTHER	PTHR19919	WD REPEAT CONTAINING PROTEIN	coord: 1..346
None	No IPR available	PANTHER	PTHR19919:SF9	SUBFAMILY NOT NAMED	coord: 1..346
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 151..165
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 283..297
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 131..305 score: 12.341
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 56..304

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25317	Cla007149	Watermelon (97103) v1	carwmB0486
Carg25317	Csa3G253490	Cucumber (Chinese Long) v2	carcuB0520
Carg25317	MELO3C014751	Melon (DHL92) v3.5.1	carmeB0495
Carg25317	ClCG05G012420	Watermelon (Charleston Gray)	carwcgB0473
Carg25317	CSPI03G20070	Wild cucumber (PI 183967)	carcpiB0527
Carg25317	Cucsa.031950	Cucumber (Gy14) v1	carcgyB0561
Carg25317	CmaCh14G007840	Cucurbita maxima (Rimu)	carcmaB0681
Carg25317	CmaCh11G015690	Cucurbita maxima (Rimu)	carcmaB0680
Carg25317	CmoCh11G015530	Cucurbita moschata (Rifu)	carcmoB0662
Carg25317	CmoCh14G007960	Cucurbita moschata (Rifu)	carcmoB0663
Carg25317	Lsi05G004220	Bottle gourd (USVL1VR-Ls)	carlsiB443
Carg25317	Cp4.1LG04g06560	Cucurbita pepo (Zucchini)	carcpeB0689
Carg25317	Cp4.1LG03g06420	Cucurbita pepo (Zucchini)	carcpeB0688
Carg25317	MELO3C014751.2	Melon (DHL92) v3.6.1	carmedB0501
Carg25317	CsaV3_3G020120	Cucumber (Chinese Long) v3	carcucB0526
Carg25317	Cla97C05G094170	Watermelon (97103) v2	carwmbB0512
Carg25317	Bhi01G001389	Wax gourd	carwgoB0592

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25317	Carg22300	Silver-seed gourd	carcarB470

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25317	Cucumber (Gy14) v2	carcgybB0497