Carg25262 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25262
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	sodium/hydrogen exchanger 8
Location	Cucurbita_argyrosperma_scaffold_210 : 242796 .. 243011 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGTAGAATTGCTGGAAATGTTTACAAACCGAGAGCTGGAAGAAGGAGCCATTGGTTCGTCTGATTGGAATCCAACTGATGCTGTGCTGTTCGTTGGACTGAGTTTGGTGCTTGGAATCGCTTGTAGACACTTACTGCGAGGCACCAGAGTTCCTTATACAGTTGCCTTGCTTGTTCTTGGCATAATTCTTGGATCCATTGGTTGGTGA

mRNA sequence

ATGGCGGAAGTAGAATTGCTGGAAATGTTTACAAACCGAGAGCTGGAAGAAGGAGCCATTGGTTCGTCTGATTGGAATCCAACTGATGCTGTGCTGTTCGTTGGACTGAGTTTGGTGCTTGGAATCGCTTGTAGACACTTACTGCGAGGCACCAGAGTTCCTTATACAGTTGCCTTGCTTGTTCTTGGCATAATTCTTGGATCCATTGGTTGGTGA

Coding sequence (CDS)

ATGGCGGAAGTAGAATTGCTGGAAATGTTTACAAACCGAGAGCTGGAAGAAGGAGCCATTGGTTCGTCTGATTGGAATCCAACTGATGCTGTGCTGTTCGTTGGACTGAGTTTGGTGCTTGGAATCGCTTGTAGACACTTACTGCGAGGCACCAGAGTTCCTTATACAGTTGCCTTGCTTGTTCTTGGCATAATTCTTGGATCCATTGGTTGGTGA

Protein sequence

MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSIGW

Homology

[Close]

BLAST of Carg25262 vs. NCBI nr
Match: XP_022955949.1 (sodium/hydrogen exchanger 8 isoform X1 [Cucurbita moschata])

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGIILGSI
Sbjct: 61 VLGIILGSI 69

[Close]

BLAST of Carg25262 vs. NCBI nr
Match: XP_022989835.1 (sodium/hydrogen exchanger 8 isoform X1 [Cucurbita maxima])

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGIILGSI
Sbjct: 61 VLGIILGSI 69

[Close]

BLAST of Carg25262 vs. NCBI nr
Match: XP_023525783.1 (sodium/hydrogen exchanger 8 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGIILGSI
Sbjct: 61 VLGIILGSI 69

[Close]

BLAST of Carg25262 vs. NCBI nr
Match: XP_022146360.1 (sodium/hydrogen exchanger 8-like isoform X1 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MA VELL++F +R+LEEGA GSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAGVELLDLFPHRDLEEGAAGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGI+LGSI
Sbjct: 61 VLGIVLGSI 69

[Close]

BLAST of Carg25262 vs. NCBI nr
Match: XP_022146361.1 (sodium/hydrogen exchanger 8-like isoform X2 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MA VELL++F +R+LEEGA GSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAGVELLDLFPHRDLEEGAAGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGI+LGSI
Sbjct: 61 VLGIVLGSI 69

[Close]

BLAST of Carg25262 vs. TAIR10
Match: AT2G01980.1 (sodium proton exchanger, putative (NHX7) (SOS1))

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 26 NPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSI 70
          +P DAVLFVG+SLVLGIA RHLLRGTRVPYTVALLV+GI LGS+
Sbjct: 32 SPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVIGIALGSL 75

[Close]

BLAST of Carg25262 vs. TAIR10
Match: AT1G14660.1 (Na+/H+ exchanger 8)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 17 EGAIGSS------DWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSI 70
          E AI SS      D +P DAV+F G SLVLG ACR+L  GTRVPYTV LLV+GI LGS+
Sbjct: 15 EKAIASSSYSAENDSSPVDAVIFAGTSLVLGTACRYLFNGTRVPYTVVLLVIGIFLGSL 73

[Close]

BLAST of Carg25262 vs. Swiss-Prot
Match: sp|Q9LKW9|NHX7_ARATH (Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana OX=3702 GN=NHX7 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-13
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 26 NPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSI 70
          +P DAVLFVG+SLVLGIA RHLLRGTRVPYTVALLV+GI LGS+
Sbjct: 32 SPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVIGIALGSL 75

[Close]

BLAST of Carg25262 vs. Swiss-Prot
Match: sp|Q3YL57|NHX8_ARATH (Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana OX=3702 GN=NHX8 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 17 EGAIGSS------DWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSI 70
          E AI SS      D +P DAV+F G SLVLG ACR+L  GTRVPYTV LLV+GI LGS+
Sbjct: 15 EKAIASSSYSAENDSSPVDAVIFAGTSLVLGTACRYLFNGTRVPYTVVLLVIGIFLGSL 73

[Close]

BLAST of Carg25262 vs. TrEMBL
Match: tr|A0A1S3CS69|A0A1S3CS69_CUCME (sodium/hydrogen exchanger 8 OS=Cucumis melo OX=3656 GN=LOC103504147 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MA VELL++F +R+LEEGAI SSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAGVELLDIFPHRDLEEGAISSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGI+LGSI
Sbjct: 61 VLGIVLGSI 69

[Close]

BLAST of Carg25262 vs. TrEMBL
Match: tr|A0A0A0KJ31|A0A0A0KJ31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098980 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MA VELL+MF +R+LEEGA  SSDWNPTDAVLF GLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAGVELLDMFPHRDLEEGATASSDWNPTDAVLFFGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGI+LGSI
Sbjct: 61 VLGIVLGSI 69

[Close]

BLAST of Carg25262 vs. TrEMBL
Match: tr|H9DVC6|H9DVC6_CUCSA (Plasmalemma Na+/H+ antiporter OS=Cucumis sativus OX=3659 GN=sos1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALL 60
          MA VELL+MF +R+LEEGA  SSDWNPTDAVLF GLSLVLGIACRHLLRGTRVPYTVALL
Sbjct: 1  MAGVELLDMFPHRDLEEGATASSDWNPTDAVLFFGLSLVLGIACRHLLRGTRVPYTVALL 60

Query: 61 VLGIILGSI 70
          VLGI+LGSI
Sbjct: 61 VLGIVLGSI 69

[Close]

BLAST of Carg25262 vs. TrEMBL
Match: tr|U5G5K6|U5G5K6_POPTR (SOS1-like protein 1 OS=Populus trichocarpa OX=3694 GN=POPTR_008G140700v3 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 22 SSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSI 70
          S +WNPTD VLF GLSL+LGIACRHLLRGTRVPYTVALLV+GI LGS+
Sbjct: 26 SDEWNPTDTVLFFGLSLLLGIACRHLLRGTRVPYTVALLVVGIALGSL 73

[Close]

BLAST of Carg25262 vs. TrEMBL
Match: tr|A0A067DM57|A0A067DM57_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0011162mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-14
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 13 RELEE-----GAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILG 70
          R LEE     G    S+ NPTDAV+FVG+SLVLGIACRHLLRGTRVPYTVALL++GI LG
Sbjct: 14 RTLEEEQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALG 73

The following BLAST results are available for this feature:

BLAST of Carg25262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955949.1	3.9e-29	100.00	sodium/hydrogen exchanger 8 isoform X1 [Cucurbita moschata]	[more]
XP_022989835.1	3.9e-29	100.00	sodium/hydrogen exchanger 8 isoform X1 [Cucurbita maxima]	[more]
XP_023525783.1	3.9e-29	100.00	sodium/hydrogen exchanger 8 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022146360.1	2.6e-25	88.41	sodium/hydrogen exchanger 8-like isoform X1 [Momordica charantia]	[more]
XP_022146361.1	2.6e-25	88.41	sodium/hydrogen exchanger 8-like isoform X2 [Momordica charantia]	[more]

BLAST of Carg25262 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01980.1	1.9e-14	84.09	sodium proton exchanger, putative (NHX7) (SOS1)	[more]
AT1G14660.1	1.4e-12	62.71	Na+/H+ exchanger 8	[more]

BLAST of Carg25262 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LKW9\|NHX7_ARATH	3.5e-13	84.09	Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana OX=3702 GN=NHX7 PE=1 SV=1	[more]
sp\|Q3YL57\|NHX8_ARATH	2.5e-11	62.71	Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana OX=3702 GN=NHX8 PE=2 SV=1	[more]

BLAST of Carg25262 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CS69\|A0A1S3CS69_CUCME	3.0e-25	88.41	sodium/hydrogen exchanger 8 OS=Cucumis melo OX=3656 GN=LOC103504147 PE=4 SV=1	[more]
tr\|A0A0A0KJ31\|A0A0A0KJ31_CUCSA	1.5e-24	86.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098980 PE=4 SV=1	[more]
tr\|H9DVC6\|H9DVC6_CUCSA	1.5e-24	86.96	Plasmalemma Na+/H+ antiporter OS=Cucumis sativus OX=3659 GN=sos1 PE=2 SV=1	[more]
tr\|U5G5K6\|U5G5K6_POPTR	5.3e-14	83.33	SOS1-like protein 1 OS=Populus trichocarpa OX=3694 GN=POPTR_008G140700v3 PE=2 SV...	[more]
tr\|A0A067DM57\|A0A067DM57_CITSI	5.3e-14	70.97	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0011162...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25262-RA	Carg25262-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25262	Cla005825	Watermelon (97103) v1	carwmB0883
Carg25262	Csa5G098980	Cucumber (Chinese Long) v2	carcuB0894
Carg25262	MELO3C005228	Melon (DHL92) v3.5.1	carmeB0869
Carg25262	ClCG01G006860	Watermelon (Charleston Gray)	carwcgB0856
Carg25262	Cucsa.026500	Cucumber (Gy14) v1	carcgyB1001
Carg25262	CmaCh04G021540	Cucurbita maxima (Rimu)	carcmaB1220
Carg25262	CmoCh04G022490	Cucurbita moschata (Rifu)	carcmoB1189
Carg25262	Lsi09G007250	Bottle gourd (USVL1VR-Ls)	carlsiB799
Carg25262	MELO3C005228.2	Melon (DHL92) v3.6.1	carmedB0878
Carg25262	CsaV3_5G017250	Cucumber (Chinese Long) v3	carcucB0918
Carg25262	Cla97C01G007230	Watermelon (97103) v2	carwmbB0919
Carg25262	Bhi12G000868	Wax gourd	carwgoB1027

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25262	Wild cucumber (PI 183967)	carcpiB0914