Carg25209 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25209
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cucurbita_argyrosperma_scaffold_189 : 62039 .. 65189 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAACTATGGAAGTTCTCTGTTCGTCATAGGTTCTTAGTAAATCGCAACATTTTTGCTCCATTTTCCTTCTCACTCGCAAACAATTCAAATCATTTAATCTTTCCTCATGGCCTCCATACTCAATCCTGCTCTTCCTCGTCGCCTGTGCAATCAATCTCTTCGTTTTCGCTGCTTCCTAATATTATTGAATTATTTTCCAACAAGCCTTCTGACCAAGACCTCTTGGTGAGAAGTCTTATGCAAAGGAAGGTCACGGAGGTGATGCATGAACTGATTCAGAACGCCGAGGATTCTGATAAGATTGTGAAAGTATTGGAAGACAATGAAGGCTTCCTCTTACGGAGACATGCTGACAGTTCTGCTTTTGTCGAGTTGCTAAAGCAATTGGGTTCACAGCCTCACTTGGCATTGGAGGTGAGTTTAATTCTCCATACTCTAACAAAATTGCTTCATATGAGTTTCTTAATTATATGTTTATGTGGGAATTGCTTACATAATTGTAGTTTGTATTTAATCGTTAGAAATGTTGAAATTTCATTTAGTTGAATTGTTATTTTTGAGGCTCTATATTATATAATGTTGACATAAAGTTGAAAAATACAAGGCCTATCAGAGGTAATCATGTACATGTCCTCGATAAATAATTTGACGATACTAAATTTATGATCAGCTTATTCTTTTGCACTTAGGTGTTTAATTGGAGAAGAAGGCAGGAAGGCTCCTTTCCTTTGACTGCTGAGGAATATGCTAAGAGTATTACTCTTGCGGGTCGATCAAAAAACGTTGACCTTGCTGTTGAGTTGTTCACTGAGGCTTCTAATAAAAGGGTCAAGACAACCTCTATTTATAATGCATTGATGGGTGCTTACATGTATAATGGCTTGGCTGACAAATGCCACTCGTTGTTTCGGGATCTTAAAAGGGATGCAAATTGTGTTCCTACCATTGTAACATATAACATCCTACTATCGGTATTTGGTCGGTTGATGTTAGTTGATCACATGGAGGCTACCTTGCGAGAAATACATGATTTGGATCTCTCCCCTAACGTGAGCACGTACAACCATCTAATAGCTGGGTATGTTACTGCATGGATGTGGGATAAAATGGAGCAAACATTTTTGAAGATGAAGGCGAGTTCGGTAAAGCCAAACACTGAAACTTTGTTGTTAATGCTTCGTGGATATGCTCATTCTGACAATCTTGAAAAGATGGAAGAGATGCACGAGTTGTCAAAGGATCATGTCGATGACAAGAATTTCCCTCTTATTAGAACTATGATATGTGCATACTGTAGGAGTACTATAGCAGATAAAGTGACAAAGATTGAGGCTTTGTTGAAGCTTATTCCGAAAGAAGAATATCGACCATGGTTGAATGTCTTATTGATAAAAGTCTATGCTCAAGAAGATTGGTTAGAGAGAATGGAGAATTCGATAAATGAGGCATTTAAGCATGGTACATCAGTAAATACTCTCCATGTGATGCGCTCCATTAGTGCCAGTTATTTTCGGTGTAACGCAGTGGACAAGCTAACGAACTTTGTAAGTCGTGCTGAATGTTCAGGTTGGAGAATCTGTCGGTCTTTATATCATTGTAAAATGGTTATGTTTGCATCAGAAAAGCGTTTCGAAGAAATGGAGTCTGTACTCGACGAAATGAAAAATATCAACTTGGATTGGACGAAAAAAACATTTTGGATATTGTATAAAGCCTACTCATTAAGTGGTTGCAGGTACAAGGTTGACCAAGTGTCGTGTTATATGTGCAAGCTTGGGTATGGGATTCCCTCGGATTTATCTCCGTCTTGACATTCTCGGATCGAAAGAATGAAAATTCCATAATTGACTTATCCAATTGTTCTTATTGGTTTTTCTCATGAATAAGTGCACAACCCAGATTTCTGAGATATCTTAGGTAAGCATCACGTCTCATTTTTACTATCAGTCACTTTATTTACCTTGCTTGCTTCGCTTGCCTATTACTTGGACTGTTTATTCCATTATATATACATATATATGACACTCTTTTACTCTCCCATTCTTATTATTTGGGTAGTTGGTGGATTATAAAGATTTTGGGTTCTAATAACAATTTAGTTCTAGTGGATAAAAGGGTTTAAAAACTCTATTTGGGTAAAACTGGTTCAAGATCATAAAATGGGCATTTACTTTTACCCCCTCTTGTGAAGTTTGTTCTTTATTTTGTTCTTGCTCCACTTCAATGTACTCTTCTTTTTAATCTTTCTTGGTTTACATTTACTTCATCTTTCAGAAAGCTGAATGAGAGATATCATAACTTTTATTTACCTGCTGTTGGGAACTATGTAGCCAAGTTTTCATTTATTTATCTCATACTATCTCTAGAAATTAGAACTTATCCCTTTGTAGATAGATATGTTTAGTTAGGATTAGTTAGTGCTTGTCTGATCTCAAAATCTCAAAACAACGTGTGTGTAACGGTTCAAGCCCACCACTAGCAGATATTGTCATCTTTGGGCTTTCTCTCCAAAATTTTAAAACGCGTCGGCTAGGGAGAGGTTTTCACACTCTTATAAAAAGAATGCTTTGTTCTCCTCTCCAACCGATGTGGGATCTCATAGTGTGATCTTTCATTTCATATCGAAGTGGTTGTTTATGATCGTACTTTTTTTAATTCGAAAAAGTAGATTCATGATCGCCTGAATATTTGATTGGTAGCATAAAGTGCTCTAATGATGACTTGAAATGAATGAACCTTGGAAACTAATAGCAACGAACAGTTTTGATGCTTGCTTGGGAAAATTTTACGTACTTATTTGTTTATTTTGTAGAGATCGAGCATTCGAAGTGGAATAGAGATTATACTGAGATAATCGAGCTGATTGGACACGAGATGAGAAAGGGAATCTAATTTATGTCCTGAAGAGGCAGCATTCGCCCATGAGTTTATCGTCGAGAGCTACGAAATCTGTGAAGCATATGGCGCAAACCATGGTTGAAGCATGTGTGCACATTTTTTTTTCTTTCTTTCACTTATGTTCTTCAACAAATTGAGATTTAAATATTTTCTTTTCTTATAAAATAAGATAATTACTATTATAGAACACTATTATTAATGTTGACTTCCCTAAACATTTAACTTGAATATTCAATAATTTTGATTT

mRNA sequence

ATGAAGCAACTATGGAAGTTCTCTGTTCGTCATAGGTTCTTAGTAAATCGCAACATTTTTGCTCCATTTTCCTTCTCACTCGCAAACAATTCAAATCATTTAATCTTTCCTCATGGCCTCCATACTCAATCCTGCTCTTCCTCGTCGCCTGTGCAATCAATCTCTTCGTTTTCGCTGCTTCCTAATATTATTGAATTATTTTCCAACAAGCCTTCTGACCAAGACCTCTTGGTGAGAAGTCTTATGCAAAGGAAGGTCACGGAGGTGATGCATGAACTGATTCAGAACGCCGAGGATTCTGATAAGATTGTGAAAGTATTGGAAGACAATGAAGGCTTCCTCTTACGGAGACATGCTGACAGTTCTGCTTTTGTCGAGTTGCTAAAGCAATTGGGTTCACAGCCTCACTTGGCATTGGAGGTGTTTAATTGGAGAAGAAGGCAGGAAGGCTCCTTTCCTTTGACTGCTGAGGAATATGCTAAGAGTATTACTCTTGCGGGTCGATCAAAAAACGTTGACCTTGCTGTTGAGTTGTTCACTGAGGCTTCTAATAAAAGGGTCAAGACAACCTCTATTTATAATGCATTGATGGGTGCTTACATGTATAATGGCTTGGCTGACAAATGCCACTCGTTGTTTCGGGATCTTAAAAGGGATGCAAATTGTGTTCCTACCATTGTAACATATAACATCCTACTATCGGTATTTGGTCGGTTGATGTTAGTTGATCACATGGAGGCTACCTTGCGAGAAATACATGATTTGGATCTCTCCCCTAACGTGAGCACGTACAACCATCTAATAGCTGGGTATGTTACTGCATGGATGTGGGATAAAATGGAGCAAACATTTTTGAAGATGAAGGCGAGTTCGGTAAAGCCAAACACTGAAACTTTGTTGTTAATGCTTCGTGGATATGCTCATTCTGACAATCTTGAAAAGATGGAAGAGATGCACGAGTTGTCAAAGGATCATGTCGATGACAAGAATTTCCCTCTTATTAGAACTATGATATGTGCATACTGTAGGAGTACTATAGCAGATAAAGTGACAAAGATTGAGGCTTTGTTGAAGCTTATTCCGAAAGAAGAATATCGACCATGGTTGAATGTCTTATTGATAAAAGTCTATGCTCAAGAAGATTGGTTAGAGAGAATGGAGAATTCGATAAATGAGGCATTTAAGCATGGTACATCAGTAAATACTCTCCATGTGATGCGCTCCATTAGTGCCAGTTATTTTCGGTGTAACGCAGTGGACAAGCTAACGAACTTTGTAAGTCGTGCTGAATGTTCAGGTTGGAGAATCTGTCGGTCTTTATATCATTGTAAAATGGTTATGTTTGCATCAGAAAAGCGTTTCGAAGAAATGGAGTCTGTACTCGACGAAATGAAAAATATCAACTTGGATTGGACGAAAAAAACATTTTGGATATTGTATAAAGCCTACTCATTAAGTGGTTGCAGGTACAAGGTTGACCAAGTGTCGTGTTATATGTGCAAGCTTGGGTATGGGATTCCCTCGGATTTATCTCCGTCTTGACATTCTCGGATCGAAAGAATGAAAATTCCATAATTGACTTATCCAATTGTTCTTATTGGTTTTTCTCATGAATAAGTGCACAACCCAGATTTCTGAGATATCTTAGAGATCGAGCATTCGAAGTGGAATAGAGATTATACTGAGATAATCGAGCTGATTGGACACGAGATGAGAAAGGGAATCTAATTTATGTCCTGAAGAGGCAGCATTCGCCCATGAGTTTATCGTCGAGAGCTACGAAATCTGTGAAGCATATGGCGCAAACCATGGTTGAAGCATGTGTGCACATTTTTTTTTCTTTCTTTCACTTATGTTCTTCAACAAATTGAGATTTAAATATTTTCTTTTCTTATAAAATAAGATAATTACTATTATAGAACACTATTATTAATGTTGACTTCCCTAAACATTTAACTTGAATATTCAATAATTTTGATTT

Coding sequence (CDS)

ATGAAGCAACTATGGAAGTTCTCTGTTCGTCATAGGTTCTTAGTAAATCGCAACATTTTTGCTCCATTTTCCTTCTCACTCGCAAACAATTCAAATCATTTAATCTTTCCTCATGGCCTCCATACTCAATCCTGCTCTTCCTCGTCGCCTGTGCAATCAATCTCTTCGTTTTCGCTGCTTCCTAATATTATTGAATTATTTTCCAACAAGCCTTCTGACCAAGACCTCTTGGTGAGAAGTCTTATGCAAAGGAAGGTCACGGAGGTGATGCATGAACTGATTCAGAACGCCGAGGATTCTGATAAGATTGTGAAAGTATTGGAAGACAATGAAGGCTTCCTCTTACGGAGACATGCTGACAGTTCTGCTTTTGTCGAGTTGCTAAAGCAATTGGGTTCACAGCCTCACTTGGCATTGGAGGTGTTTAATTGGAGAAGAAGGCAGGAAGGCTCCTTTCCTTTGACTGCTGAGGAATATGCTAAGAGTATTACTCTTGCGGGTCGATCAAAAAACGTTGACCTTGCTGTTGAGTTGTTCACTGAGGCTTCTAATAAAAGGGTCAAGACAACCTCTATTTATAATGCATTGATGGGTGCTTACATGTATAATGGCTTGGCTGACAAATGCCACTCGTTGTTTCGGGATCTTAAAAGGGATGCAAATTGTGTTCCTACCATTGTAACATATAACATCCTACTATCGGTATTTGGTCGGTTGATGTTAGTTGATCACATGGAGGCTACCTTGCGAGAAATACATGATTTGGATCTCTCCCCTAACGTGAGCACGTACAACCATCTAATAGCTGGGTATGTTACTGCATGGATGTGGGATAAAATGGAGCAAACATTTTTGAAGATGAAGGCGAGTTCGGTAAAGCCAAACACTGAAACTTTGTTGTTAATGCTTCGTGGATATGCTCATTCTGACAATCTTGAAAAGATGGAAGAGATGCACGAGTTGTCAAAGGATCATGTCGATGACAAGAATTTCCCTCTTATTAGAACTATGATATGTGCATACTGTAGGAGTACTATAGCAGATAAAGTGACAAAGATTGAGGCTTTGTTGAAGCTTATTCCGAAAGAAGAATATCGACCATGGTTGAATGTCTTATTGATAAAAGTCTATGCTCAAGAAGATTGGTTAGAGAGAATGGAGAATTCGATAAATGAGGCATTTAAGCATGGTACATCAGTAAATACTCTCCATGTGATGCGCTCCATTAGTGCCAGTTATTTTCGGTGTAACGCAGTGGACAAGCTAACGAACTTTGTAAGTCGTGCTGAATGTTCAGGTTGGAGAATCTGTCGGTCTTTATATCATTGTAAAATGGTTATGTTTGCATCAGAAAAGCGTTTCGAAGAAATGGAGTCTGTACTCGACGAAATGAAAAATATCAACTTGGATTGGACGAAAAAAACATTTTGGATATTGTATAAAGCCTACTCATTAAGTGGTTGCAGGTACAAGGTTGACCAAGTGTCGTGTTATATGTGCAAGCTTGGGTATGGGATTCCCTCGGATTTATCTCCGTCTTGA

Protein sequence

MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLLPNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLMLVDHMEATLREIHDLDLSPNVSTYNHLIAGYVTAWMWDKMEQTFLKMKASSVKPNTETLLLMLRGYAHSDNLEKMEEMHELSKDHVDDKNFPLIRTMICAYCRSTIADKVTKIEALLKLIPKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVDKLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILYKAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS

Homology

[Close]

BLAST of Carg25209 vs. NCBI nr
Match: XP_022923507.1 (pentatricopeptide repeat-containing protein At2g30780 [Cucurbita moschata] >XP_022923508.1 pentatricopeptide repeat-containing protein At2g30780 [Cucurbita moschata])

HSP 1 Score: 774.6 bits (1999), Expect = 2.1e-220
Identity = 509/513 (99.22%), Postives = 511/513 (99.61%), Query Frame = 0


Query: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60
           MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNH IFPHGLHTQSCSSSSPV SISSFSLL
Sbjct: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHFIFPHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120
           PNIIELFSNKPSDQDLLVRS+MQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRSIMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180
           SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT
Sbjct: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180

Query: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240
           EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM
Sbjct: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360

Query: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420
           PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAF+HGTSVNTLHVMRSISASYFRCNAVD
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFEHGTSVNTLHVMRSISASYFRCNAVD 420

Query: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480
           KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480

Query: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 514
           KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS
Sbjct: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 513

[Close]

BLAST of Carg25209 vs. NCBI nr
Match: XP_023553032.1 (pentatricopeptide repeat-containing protein At2g30780 [Cucurbita pepo subsp. pepo] >XP_023553033.1 pentatricopeptide repeat-containing protein At2g30780 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 757.3 bits (1954), Expect = 3.4e-215
Identity = 500/513 (97.47%), Postives = 502/513 (97.86%), Query Frame = 0


Query: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60
           MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNH IFPHGLHTQSCSSSSPV SISSFSLL
Sbjct: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHFIFPHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120
           PNIIELFSNKPSDQDLLVR LMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRRLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180
           SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSIT+AGRSKNVDLA ELFT
Sbjct: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITVAGRSKNVDLAFELFT 180

Query: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240
           EASNKRVK TS YNALMGAYMYNGLADKCHSLFRDLK DANCVPTIVTYNILLSVFGRLM
Sbjct: 181 EASNKRVKRTSTYNALMGAYMYNGLADKCHSLFRDLKMDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LI
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKLI 360

Query: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420
           PKEEYRPWLNVLLIKVYAQED LERMENSINEAF+HGTSVNTLHVMRSISASYFRCNAVD
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDLLERMENSINEAFEHGTSVNTLHVMRSISASYFRCNAVD 420

Query: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480
           KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480

Query: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 514
           K YSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS
Sbjct: 481 KTYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 513

[Close]

BLAST of Carg25209 vs. NCBI nr
Match: XP_023007782.1 (pentatricopeptide repeat-containing protein At2g30780 [Cucurbita maxima] >XP_023007783.1 pentatricopeptide repeat-containing protein At2g30780 [Cucurbita maxima])

HSP 1 Score: 710.3 bits (1832), Expect = 4.8e-201
Identity = 481/511 (94.13%), Postives = 491/511 (96.09%), Query Frame = 0


Query: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60
           MKQLWKFSVR R LVNRNIFAPFSFSLANNSN+ +F HGLHTQSCSSSSPV SISSFSLL
Sbjct: 1   MKQLWKFSVRRRILVNRNIFAPFSFSLANNSNYDMFHHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120
           PNIIELFSNKPSDQDLLVRS+MQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRSIMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180
           SS FVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSIT+AGRSKNVDLAVELFT
Sbjct: 121 SSTFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITVAGRSKNVDLAVELFT 180

Query: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240
           +ASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLK DANCVPTIVTYNILLSVFGRLM
Sbjct: 181 KASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKTDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420
                    NVLLIKVYAQEDWLERME+SINEAF+HGTSVNTLHVMRSI ASY+RCNAVD
Sbjct: 361 XXXXXXXXXNVLLIKVYAQEDWLERMESSINEAFEHGTSVNTLHVMRSIIASYYRCNAVD 420

Query: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480
           KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKN+NLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNMNLDWTKKTFWILY 480

Query: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLS 512
           KAYSLS CRYKVDQV+CYMCKLGYGIPSDLS
Sbjct: 481 KAYSLSDCRYKVDQVACYMCKLGYGIPSDLS 511

[Close]

BLAST of Carg25209 vs. NCBI nr
Match: XP_022145941.1 (pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145942.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145943.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145944.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145945.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145946.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145947.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145948.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia])

HSP 1 Score: 637.5 bits (1643), Expect = 3.9e-179
Identity = 440/513 (85.77%), Postives = 467/513 (91.03%), Query Frame = 0


Query: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60
           MKQLWK SV  RFLV RNIFAPF+F L   SN+LI   GLHTQ+ +SS    S+SSFSLL
Sbjct: 1   MKQLWKISVPRRFLVKRNIFAPFTFPLTRTSNYLIL-RGLHTQTHTSSLLPPSLSSFSLL 60

Query: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120
           PNIIELFSNKPSD DLLVR  MQRK+TEV HELIQNA+DSDKIVK LED E  LLRRHAD
Sbjct: 61  PNIIELFSNKPSDHDLLVRMNMQRKLTEVRHELIQNADDSDKIVKKLEDCEDLLLRRHAD 120

Query: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180
            SAFVELLK+L S+PHLALEVFNWRRRQEGSFP+TAEEYAK IT+AGRSKNVDLA+ELFT
Sbjct: 121 GSAFVELLKKLDSRPHLALEVFNWRRRQEGSFPMTAEEYAKGITVAGRSKNVDLAIELFT 180

Query: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240
           EASN+R+KTTS YNALMGAYM+NGL DKCHSLFRDLKR+ANCVPTIVTYNIL+SVFGRLM
Sbjct: 181 EASNRRIKTTSTYNALMGAYMFNGLVDKCHSLFRDLKREANCVPTIVTYNILISVFGRLM 240

Query: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           LVDHMEATL+EI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LVDHMEATLQEIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    LI
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLKLI 360

Query: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420
           P+EEYRPWLNVLLI+VYAQEDWLE ME+SINEAF+HGTSV T+HVMRSI ASYFRCNAVD
Sbjct: 361 PEEEYRPWLNVLLIRVYAQEDWLEGMESSINEAFEHGTSVTTVHVMRSIIASYFRCNAVD 420

Query: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480
           KLTNFV RAECSGWRICRSLYHCKMVMFAS+KR EEME VL+EMK+INLDWTKKTFWILY
Sbjct: 421 KLTNFVKRAECSGWRICRSLYHCKMVMFASQKRLEEMECVLNEMKSINLDWTKKTFWILY 480

Query: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 514
           KAYS+SGCRYKVDQV   MCKLGYGIP D  PS
Sbjct: 481 KAYSVSGCRYKVDQVVGLMCKLGYGIPLDSCPS 512

[Close]

BLAST of Carg25209 vs. NCBI nr
Match: XP_008448953.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Cucumis melo])

HSP 1 Score: 593.6 bits (1529), Expect = 6.5e-166
Identity = 424/513 (82.65%), Postives = 457/513 (89.08%), Query Frame = 0


Query: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60
           MKQLW FSV  R LVNR IFAP +FSL  N+N+   PHGLHTQS SSSSP  SISSFSLL
Sbjct: 1   MKQLWMFSVPRRLLVNRIIFAPSAFSL-RNTNYCFLPHGLHTQSPSSSSPPPSISSFSLL 60

Query: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120
            N+IELFSNKPSD  +L RS+MQ+KV EV HELIQNAE+SDKI+K+L+D+E  LLR+HAD
Sbjct: 61  TNLIELFSNKPSDHAILERSIMQKKVLEVSHELIQNAENSDKIMKILKDSEDLLLRKHAD 120

Query: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180
             AFVELLKQLGSQP+LALEV NWRRRQ GSFPLTAEEYAK I +AGRSK++DLAV LFT
Sbjct: 121 GLAFVELLKQLGSQPYLALEVLNWRRRQGGSFPLTAEEYAKGIAVAGRSKHIDLAVGLFT 180

Query: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240
           EASNKRVK TS YNALMG YMYNGLADKC+SLFRDLKRDA+CVP IVTYNILLS+FGRLM
Sbjct: 181 EASNKRVKATSTYNALMGVYMYNGLADKCNSLFRDLKRDADCVPNIVTYNILLSLFGRLM 240

Query: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           LVDHMEAT+REIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LVDHMEATMREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360

Query: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420
           P+EEYR WLN  LI +YAQ D LERME+SINEAF+HGTS+ T  +MR I ASYFRCNAVD
Sbjct: 361 PEEEYRAWLNCKLISIYAQADCLERMEHSINEAFEHGTSIYTARLMRCIIASYFRCNAVD 420

Query: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480
           KL NFVSRAE +GWRICRSLYHCKMVMFAS+ RFEEME VLDEMKNIN+DWTKKTF+ILY
Sbjct: 421 KLINFVSRAESAGWRICRSLYHCKMVMFASQNRFEEMECVLDEMKNINMDWTKKTFYILY 480

Query: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 514
           KAYS SGCRYK +QV   MCKLGYG+P DL  S
Sbjct: 481 KAYSTSGCRYKANQVVGRMCKLGYGVPVDLDSS 512

[Close]

BLAST of Carg25209 vs. TAIR10
Match: AT2G30780.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 289.3 bits (739), Expect = 4.7e-78
Identity = 228/421 (54.16%), Postives = 291/421 (69.12%), Query Frame = 0


Query: 84  RKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPHLALEVFN 143
           ++V+ +  EL+      +K   VL+    +L R + D +  +EL+ QL  + +LAL+V  
Sbjct: 31  QRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQVLE 90

Query: 144 WRRRQEG-SFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVKTTSIYNALMGAYMY 203
           WRR Q+    PLT+EEYAK I +AGR+++++LAV LF EA+ KR++T S+YN+LM  YM+
Sbjct: 91  WRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSVYMW 150

Query: 204 NGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLMLVDHMEATLREIHXXXXXXXXX 263
           NGLA++C SLF+D +R  +C PT+VTYNIL+SV+GRL++V +MEA   E+    XXXXXX
Sbjct: 151 NGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKXXXXXX 210

Query: 264 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 323
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 211 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270

Query: 324 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIPKEEYRPWLNVLLIKVYAQEDW 383
           XX                                  L+  EEY PWLNVLLI++YAQED+
Sbjct: 271 XXQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQEDF 330

Query: 384 LERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVDKLTNFVSRAECSGWRICRSLYH 443
           +E ME+ INEAF+  T VN   +MR+I A+YFRCN VD L NFV RAE +GW++CRSLYH
Sbjct: 331 VEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRSLYH 390

Query: 444 CKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILYKAYSLSGCRYKVDQVSCYMCKL 503
           CK++M+ S+KRFEEME V++EM   N     KTF I+ KAY   G     ++V   M K 
Sbjct: 391 CKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKMLKR 450

[Close]

BLAST of Carg25209 vs. TAIR10
Match: AT2G48000.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-64
Identity = 222/421 (52.73%), Postives = 288/421 (68.41%), Query Frame = 0


Query: 91  HELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPHLALEVFNWRRRQE- 150
           ++L++   DS K+  VLE N+          +AFVELL+QL   P L+  VF+WRR +  
Sbjct: 57  NQLLRFRNDSGKVASVLERNK-------IQGAAFVELLRQLRPWPVLSQLVFDWRRNKAL 116

Query: 151 -GSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVKTTSIYNALMGAYMYNGLADK 210
               P+TA+EYAK IT++GR KNVDLA+ LF E++N   KTTS+YNALMGAY+ NGL+  
Sbjct: 117 CDGLPMTADEYAKGITISGRLKNVDLALSLFHESAN---KTTSVYNALMGAYLCNGLSHH 176

Query: 211 CHSLFRDLKRD----ANCVPTIVTYNILLSVFGRLMLVDHMEATLREIHXXXXXXXXXXX 270
           C  LF D        ++  P++ TYNIL+S++GRL++V+ ME+   ++     XXXXXXX
Sbjct: 177 CEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMESVFLQLQQLNIXXXXXXX 236

Query: 271 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 330
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 237 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 296

Query: 331 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIPKEEYRPWLNVLLIKVYAQEDWLE 390
           XXXXX                             LIPK+ Y+PWL +LL++VYA++D L 
Sbjct: 297 XXXXXEIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKPWLYLLLMQVYAKDDNLH 356

Query: 391 RMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVDKLTNFVSRAECSGWRICRSLYHCK 450
            MEN I++A   G  + T  +MRSI ASYFRCNAVDKL  FV RA  +GW++ RS++H  
Sbjct: 357 AMENFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLAKFVQRANSAGWKMSRSMFHGL 416

Query: 451 MVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILYKAYSLS-GCRYKVDQVSCYMCKLG 505
           M+M+ S+KRF+EME+VL EM++  +  +KKT  IL + Y+ + G  +KV+QV+  M K G
Sbjct: 417 MIMYGSQKRFKEMENVLSEMESFKISRSKKTLCILLRVYAATHGQEHKVNQVAGMMLKHG 467

[Close]

BLAST of Carg25209 vs. TAIR10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-10
Identity = 56/182 (30.77%), Postives = 86/182 (47.25%), Query Frame = 0


Query: 76  LLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQP 135
           +LVRSLM R     + +     +  DK VKV+  +  FLL        F EL K    + 
Sbjct: 69  VLVRSLMSR-----ISDREPLVKTLDKYVKVVRCDHCFLL--------FEELGK--SDKW 128

Query: 136 HLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVK-TTSIYN 195
              LEVF W ++Q    P     Y+K I++ G+     +A+ LF+E  N   +   S+YN
Sbjct: 129 LQCLEVFRWMQKQRWYIPDNG-VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYN 188

Query: 196 ALMGAYMYN----GLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLMLVDHMEATLR 253
           AL+ A+++        +K       +K    C P +VTYNILL  F +   VD + A  +
Sbjct: 189 ALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFK 234

[Close]

BLAST of Carg25209 vs. TAIR10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-06
Identity = 35/116 (30.17%), Postives = 55/116 (47.41%), Query Frame = 0


Query: 138 ALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVK-TTSIYNAL 197
           ALEVF+  R Q    P     Y K + L G+S   + A +LF E   + ++ T  +Y AL
Sbjct: 107 ALEVFDMLREQTFYQPKEG-TYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTAL 166

Query: 198 MGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLMLVDHMEATLREI 253
           + AY  + L D   S+   +K    C P + TY+ LL         D +++  +E+
Sbjct: 167 LAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEM 221

[Close]

BLAST of Carg25209 vs. TAIR10
Match: AT1G02370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 4.5e-04
Identity = 30/120 (25.00%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 134 QPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVKTTSIY 193
           +P  A E+F+W  +++ +F  +  ++A  + L G++K ++ A   F           S Y
Sbjct: 118 RPQHAFEIFDWMEKRKMTF--SVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTY 177

Query: 194 NALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRL-------MLVDHME 247
            ALM  Y      +K  + F ++  + N V   + +N ++S++ RL       +LVD M+
Sbjct: 178 GALMNCYCVELEEEKAKAHF-EIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMK 234

[Close]

BLAST of Carg25209 vs. Swiss-Prot
Match: sp|O49343|PP177_ARATH (Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana OX=3702 GN=At2g30780 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 8.6e-77
Identity = 228/421 (54.16%), Postives = 291/421 (69.12%), Query Frame = 0


Query: 84  RKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPHLALEVFN 143
           ++V+ +  EL+      +K   VL+    +L R + D +  +EL+ QL  + +LAL+V  
Sbjct: 31  QRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQVLE 90

Query: 144 WRRRQEG-SFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVKTTSIYNALMGAYMY 203
           WRR Q+    PLT+EEYAK I +AGR+++++LAV LF EA+ KR++T S+YN+LM  YM+
Sbjct: 91  WRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSVYMW 150

Query: 204 NGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLMLVDHMEATLREIHXXXXXXXXX 263
           NGLA++C SLF+D +R  +C PT+VTYNIL+SV+GRL++V +MEA   E+    XXXXXX
Sbjct: 151 NGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKXXXXXX 210

Query: 264 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 323
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 211 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270

Query: 324 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIPKEEYRPWLNVLLIKVYAQEDW 383
           XX                                  L+  EEY PWLNVLLI++YAQED+
Sbjct: 271 XXQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQEDF 330

Query: 384 LERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVDKLTNFVSRAECSGWRICRSLYH 443
           +E ME+ INEAF+  T VN   +MR+I A+YFRCN VD L NFV RAE +GW++CRSLYH
Sbjct: 331 VEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRSLYH 390

Query: 444 CKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILYKAYSLSGCRYKVDQVSCYMCKL 503
           CK++M+ S+KRFEEME V++EM   N     KTF I+ KAY   G     ++V   M K 
Sbjct: 391 CKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKMLKR 450

[Close]

BLAST of Carg25209 vs. Swiss-Prot
Match: sp|Q9ZU88|PP204_ARATH (Pentatricopeptide repeat-containing protein At2g48000 OS=Arabidopsis thaliana OX=3702 GN=At2g48000 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-63
Identity = 222/421 (52.73%), Postives = 288/421 (68.41%), Query Frame = 0


Query: 91  HELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPHLALEVFNWRRRQE- 150
           ++L++   DS K+  VLE N+          +AFVELL+QL   P L+  VF+WRR +  
Sbjct: 57  NQLLRFRNDSGKVASVLERNK-------IQGAAFVELLRQLRPWPVLSQLVFDWRRNKAL 116

Query: 151 -GSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVKTTSIYNALMGAYMYNGLADK 210
               P+TA+EYAK IT++GR KNVDLA+ LF E++N   KTTS+YNALMGAY+ NGL+  
Sbjct: 117 CDGLPMTADEYAKGITISGRLKNVDLALSLFHESAN---KTTSVYNALMGAYLCNGLSHH 176

Query: 211 CHSLFRDLKRD----ANCVPTIVTYNILLSVFGRLMLVDHMEATLREIHXXXXXXXXXXX 270
           C  LF D        ++  P++ TYNIL+S++GRL++V+ ME+   ++     XXXXXXX
Sbjct: 177 CEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMESVFLQLQQLNIXXXXXXX 236

Query: 271 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 330
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 237 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 296

Query: 331 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIPKEEYRPWLNVLLIKVYAQEDWLE 390
           XXXXX                             LIPK+ Y+PWL +LL++VYA++D L 
Sbjct: 297 XXXXXEIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKPWLYLLLMQVYAKDDNLH 356

Query: 391 RMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVDKLTNFVSRAECSGWRICRSLYHCK 450
            MEN I++A   G  + T  +MRSI ASYFRCNAVDKL  FV RA  +GW++ RS++H  
Sbjct: 357 AMENFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLAKFVQRANSAGWKMSRSMFHGL 416

Query: 451 MVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILYKAYSLS-GCRYKVDQVSCYMCKLG 505
           M+M+ S+KRF+EME+VL EM++  +  +KKT  IL + Y+ + G  +KV+QV+  M K G
Sbjct: 417 MIMYGSQKRFKEMENVLSEMESFKISRSKKTLCILLRVYAATHGQEHKVNQVAGMMLKHG 467

[Close]

BLAST of Carg25209 vs. Swiss-Prot
Match: sp|Q9SV96|PP358_ARATH (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-09
Identity = 56/182 (30.77%), Postives = 86/182 (47.25%), Query Frame = 0


Query: 76  LLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQP 135
           +LVRSLM R     + +     +  DK VKV+  +  FLL        F EL K    + 
Sbjct: 69  VLVRSLMSR-----ISDREPLVKTLDKYVKVVRCDHCFLL--------FEELGK--SDKW 128

Query: 136 HLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVK-TTSIYN 195
              LEVF W ++Q    P     Y+K I++ G+     +A+ LF+E  N   +   S+YN
Sbjct: 129 LQCLEVFRWMQKQRWYIPDNG-VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYN 188

Query: 196 ALMGAYMYN----GLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLMLVDHMEATLR 253
           AL+ A+++        +K       +K    C P +VTYNILL  F +   VD + A  +
Sbjct: 189 ALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFK 234

[Close]

BLAST of Carg25209 vs. Swiss-Prot
Match: sp|A7LN87|PPR5_MAIZE (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.6e-09
Identity = 53/171 (30.99%), Postives = 86/171 (50.29%), Query Frame = 0


Query: 77  LVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPH 136
           LVRSL++R            A   +++V VL+ +   +   H        L ++LG +  
Sbjct: 60  LVRSLLRR-----------TAGGKERLVPVLDRHVRVVRTEHC-----FLLFEELGRRDA 119

Query: 137 --LALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVK-TTSIY 196
               L+VF W ++Q   +      Y+K I++ GR   + +A+ LF++  N   K  TS+Y
Sbjct: 120 WLQCLDVFRWMQKQRW-YVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVY 179

Query: 197 NALMGAYMYNGLADKCHSL------FRDLKRDANCVPTIVTYNILLSVFGR 239
           N+L+GA++++   DK  +L      F  +K    C PTIVTYNILL  F +
Sbjct: 180 NSLIGAHLHS--RDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQ 211

[Close]

BLAST of Carg25209 vs. Swiss-Prot
Match: sp|A3ABE1|PPR5_ORYSJ (Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0750400 PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 6.5e-08
Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 101 DKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYA 160
           D+ VKV+     FLL        F EL ++ G      LEVF W ++Q   +      Y+
Sbjct: 77  DRHVKVVRTEHCFLL--------FEELGRRDGWLQ--CLEVFRWMQKQRW-YVADNGIYS 136

Query: 161 KSITLAGRSKNVDLAVELFTEASNKRVK-TTSIYNALMGAYMYNGLADKCHSL------F 220
           K I++ GR   + +A+ LF++  N   +  TS+YN+L+G ++++   DK  +L      F
Sbjct: 137 KLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTHLHS--RDKSKALAKALGYF 196

Query: 221 RDLKRDANCVPTIVTYNILLSVFGR 239
             +K    C P IVTYNILL  F +
Sbjct: 197 EKMKTIDRCQPNIVTYNILLRAFAQ 208

[Close]

BLAST of Carg25209 vs. TrEMBL
Match: tr|A0A1S3BKY2|A0A1S3BKY2_CUCME (pentatricopeptide repeat-containing protein At2g30780 OS=Cucumis melo OX=3656 GN=LOC103490967 PE=4 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 4.3e-166
Identity = 424/513 (82.65%), Postives = 457/513 (89.08%), Query Frame = 0


Query: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60
           MKQLW FSV  R LVNR IFAP +FSL  N+N+   PHGLHTQS SSSSP  SISSFSLL
Sbjct: 1   MKQLWMFSVPRRLLVNRIIFAPSAFSL-RNTNYCFLPHGLHTQSPSSSSPPPSISSFSLL 60

Query: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120
            N+IELFSNKPSD  +L RS+MQ+KV EV HELIQNAE+SDKI+K+L+D+E  LLR+HAD
Sbjct: 61  TNLIELFSNKPSDHAILERSIMQKKVLEVSHELIQNAENSDKIMKILKDSEDLLLRKHAD 120

Query: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180
             AFVELLKQLGSQP+LALEV NWRRRQ GSFPLTAEEYAK I +AGRSK++DLAV LFT
Sbjct: 121 GLAFVELLKQLGSQPYLALEVLNWRRRQGGSFPLTAEEYAKGIAVAGRSKHIDLAVGLFT 180

Query: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240
           EASNKRVK TS YNALMG YMYNGLADKC+SLFRDLKRDA+CVP IVTYNILLS+FGRLM
Sbjct: 181 EASNKRVKATSTYNALMGVYMYNGLADKCNSLFRDLKRDADCVPNIVTYNILLSLFGRLM 240

Query: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           LVDHMEAT+REIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LVDHMEATMREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360

Query: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420
           P+EEYR WLN  LI +YAQ D LERME+SINEAF+HGTS+ T  +MR I ASYFRCNAVD
Sbjct: 361 PEEEYRAWLNCKLISIYAQADCLERMEHSINEAFEHGTSIYTARLMRCIIASYFRCNAVD 420

Query: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480
           KL NFVSRAE +GWRICRSLYHCKMVMFAS+ RFEEME VLDEMKNIN+DWTKKTF+ILY
Sbjct: 421 KLINFVSRAESAGWRICRSLYHCKMVMFASQNRFEEMECVLDEMKNINMDWTKKTFYILY 480

Query: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 514
           KAYS SGCRYK +QV   MCKLGYG+P DL  S
Sbjct: 481 KAYSTSGCRYKANQVVGRMCKLGYGVPVDLDSS 512

[Close]

BLAST of Carg25209 vs. TrEMBL
Match: tr|A0A0A0L4I3|A0A0A0L4I3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038710 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.1e-165
Identity = 418/515 (81.17%), Postives = 455/515 (88.35%), Query Frame = 0


Query: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60
           MKQLW FSV  R LV+RNIFA F+FSL  N+N+   PHGLHTQS SSSSP  SISSFSL+
Sbjct: 1   MKQLWMFSVPRRLLVSRNIFASFAFSL-TNTNYCFLPHGLHTQSRSSSSPPPSISSFSLV 60

Query: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120
            N+IELFSNKP D ++L   +M+RKV EV HELI N+EDS+KIVK+LED++  LL +H D
Sbjct: 61  ANLIELFSNKPDDHEILAICIMERKVLEVSHELILNSEDSNKIVKILEDSKDLLLWKHTD 120

Query: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180
            SAFVELLKQLGSQP+LALEVFNWRRRQ GSFPLT EEYAK I +AG+SK++DLAV LF 
Sbjct: 121 GSAFVELLKQLGSQPNLALEVFNWRRRQGGSFPLTVEEYAKGIAVAGKSKHIDLAVGLFN 180

Query: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240
           EASNKRVK TS YNALMG +M+NGLADKC+S+FRDLKRDA CVP IVTYNIL+SVFGRLM
Sbjct: 181 EASNKRVKATSTYNALMGVFMFNGLADKCNSVFRDLKRDAGCVPNIVTYNILISVFGRLM 240

Query: 241 LVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           LVDHMEAT+REIH   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LVDHMEATMREIHNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 360

Query: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420
           P+EEYRPWLNV LI+VYAQ D LERMENSINEAF+HGTSV T+HVMRSI ASYFRCNAVD
Sbjct: 361 PEEEYRPWLNVKLIRVYAQADCLERMENSINEAFEHGTSVYTVHVMRSIIASYFRCNAVD 420

Query: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480
           KL NF+SRAE SGWRICRSLYHCKMVMFAS+ R EEME VLDEMKN NLDW+KKTF+ILY
Sbjct: 421 KLINFISRAESSGWRICRSLYHCKMVMFASQNRLEEMECVLDEMKNFNLDWSKKTFYILY 480

Query: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPS--DLSPS 514
           KAYS SGCRYK +QV C MCKLGYG+P   D SPS
Sbjct: 481 KAYSTSGCRYKANQVVCRMCKLGYGVPVGWDSSPS 514

[Close]

BLAST of Carg25209 vs. TrEMBL
Match: tr|D7TP76|D7TP76_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00910 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.2e-120
Identity = 343/452 (75.88%), Postives = 394/452 (87.17%), Query Frame = 0


Query: 60  LPNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHA 119
           L ++I LFS+K S+ DL  R  ++ KV+++  EL+ + +DSD +V+VLE+    L R ++
Sbjct: 40  LTSMIGLFSDKHSELDLRAREELRGKVSQLRDELVPSGDDSDMVVRVLEEKGESLFRSYS 99

Query: 120 DSSAFVELLKQLGSQPHLALEVFNWRRRQ-EGSFPLTAEEYAKSITLAGRSKNVDLAVEL 179
           + SAFVELLKQL S P+LAL+VFNWRR Q + S P+T+EEYAK I++AGR+KNVDLAVEL
Sbjct: 100 NGSAFVELLKQLSSWPYLALQVFNWRRNQTDYSIPMTSEEYAKGISVAGRTKNVDLAVEL 159

Query: 180 FTEASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGR 239
           FTEA+NK++KTTS YNALMGAYM NG A+KC +LFRDLKR+A+C PTIVTYNIL+SVFGR
Sbjct: 160 FTEAANKQIKTTSTYNALMGAYMCNGHAEKCQALFRDLKREASCSPTIVTYNILISVFGR 219

Query: 240 LMLVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 299
           LMLVDHMEAT REI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 220 LMLVDHMEATFREIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 279

Query: 300 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 359
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 280 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 339

Query: 360 LIPKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNA 419
            IP+ EYRPWLNV+LI+VYAQEDW+E MENSINEAF+H TSV T+ VMRSI A+YFRCNA
Sbjct: 340 XIPENEYRPWLNVMLIRVYAQEDWVEEMENSINEAFEHKTSVKTMRVMRSIIATYFRCNA 399

Query: 420 VDKLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWI 479
           VD+L NFV RAEC GW ICRSLYHCKMVM+AS+KR EEMESVL+EM++ N   TKKTFWI
Sbjct: 400 VDRLANFVKRAECGGWHICRSLYHCKMVMYASQKRLEEMESVLNEMESSNFCCTKKTFWI 459

Query: 480 LYKAYSLSGCRYKVDQVSCYMCKLGYGIPSDL 511
           LYKAYS+   R+KV+QV   MCK GYGIPSD+
Sbjct: 460 LYKAYSMWDQRHKVEQVKGLMCKHGYGIPSDV 491

[Close]

BLAST of Carg25209 vs. TrEMBL
Match: tr|A0A2N9II45|A0A2N9II45_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51605 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.3e-118
Identity = 346/497 (69.62%), Postives = 401/497 (80.68%), Query Frame = 0


Query: 21  APFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLLPNIIELFSNKPSDQDLLVRS 80
           +PF+F+L  + N     +G  T+  ++ + +QS S+++   NI+ LFS+K +  D L R 
Sbjct: 31  SPFNFTLTKSPN-----YGFTTRDLNAQTLLQSNSNYTFPSNILSLFSDKLAHCDSLARE 90

Query: 81  LMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHADSSAFVELLKQLGSQPHLALE 140
            ++ KVT +  EL+ N EDSDK V++LE+    L R ++D SAF ELLKQLGS PHLALE
Sbjct: 91  DLRNKVTTLKEELVLNLEDSDKFVRILEEKGNSLFRSYSDGSAFTELLKQLGSWPHLALE 150

Query: 141 VFNWRRRQE--GS--FPLTAEEYAKSITLAGRSKNVDLAVELFTEASNKRVKTTSIYNAL 200
           VFNW+R+Q   GS   P+T+EEY+K I +AGR KNVDLAVELFTEA+N R+KT S YNAL
Sbjct: 151 VFNWKRKQANYGSPITPMTSEEYSKGIKIAGRIKNVDLAVELFTEAANNRIKTISTYNAL 210

Query: 201 MGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLMLVDHMEATLREIHXXX 260
           MGAYM NGL DKC SLFRDLKR+A C P++VTYNIL+SVFGRLMLVDHMEA  REI+   
Sbjct: 211 MGAYMCNGLGDKCQSLFRDLKREAICRPSVVTYNILISVFGRLMLVDHMEAAFREINELN 270

Query: 261 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 320
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 271 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 330

Query: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIPKEEYRPWLNVLLIKV 380
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         WLNV+LI+V
Sbjct: 331 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLNVMLIRV 390

Query: 381 YAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVDKLTNFVSRAECSGWRI 440
           +AQEDWLE MENSINEAF+H TSV T++VMRSI ASYFRC AVDKL NFV RAEC+GWRI
Sbjct: 391 FAQEDWLEEMENSINEAFEHNTSVTTVNVMRSIIASYFRCKAVDKLANFVRRAECAGWRI 450

Query: 441 CRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILYKAYSLSGCRYKVDQVS 500
           CRSLYHCKMVM+ASE+R  EMESVLDEM+  +L+ TKKTF I+YKAYS+ G R+KV+QV 
Sbjct: 451 CRSLYHCKMVMYASERRLHEMESVLDEMEKFSLNRTKKTFLIMYKAYSMCGQRHKVEQVY 510

Query: 501 CYMCKLGYGIPSDLSPS 514
             M K GYG+P D  PS
Sbjct: 511 GLMWKYGYGVPLDAFPS 522

[Close]

BLAST of Carg25209 vs. TrEMBL
Match: tr|M5W6D5|M5W6D5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G249700 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.5e-115
Identity = 318/518 (61.39%), Postives = 372/518 (71.81%), Query Frame = 0


Query: 1   MKQLWKFS--------VRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQ 60
           MK++WK S         RHR         P++ +L N+ N+  F   ++ Q+ SSSSP  
Sbjct: 1   MKRVWKLSDAAQSELLCRHRCSSKTKTLPPYNLTLTNSPNYR-FTRDVNAQNHSSSSPXX 60

Query: 61  SISSFSLLPNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEG 120
                +  P+II LF +KPS QDL  R  +  KVT++  EL+QN+ DSD+ V+VLE+   
Sbjct: 61  XXP--TSFPSIIGLFIDKPSPQDLRAREDLVHKVTQLRDELVQNSGDSDEFVRVLEEKGS 120

Query: 121 FLLRRHADSSAFVELLKQLGSQPHLALEVFNWRRRQ-EGSFPLTAEEYAKSITLAGRSKN 180
                + +  A VEL+ QL S PHLA+EVF WRR+Q  G  P+T EEYAK+ITLAG++KN
Sbjct: 121 SFFSSYGNGYAVVELMNQLRSWPHLAVEVFYWRRKQVAGGTPMTPEEYAKAITLAGKTKN 180

Query: 181 VDLAVELFTEASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNI 240
           V+LAVELFTEA NKR+KTTSIYNALM AYM+NGLA KC SLFRDLKR+ +C PTIVTYNI
Sbjct: 181 VELAVELFTEALNKRIKTTSIYNALMSAYMFNGLAAKCQSLFRDLKREPDCSPTIVTYNI 240

Query: 241 LLSVFGRLMLVDHMEATLREIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           L+SVFGRLMLVDHMEATL+ ++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 LISVFGRLMLVDHMEATLQGLNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKEIPLIRAMICAYCKSSAADRVK 360

Query: 361 XXXXXXXLIPKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISA 420
                  LIP+ EYRPWLNVLLI+VYAQEDW E ME SI+EAF+H  SV T  VMRSI +
Sbjct: 361 KIHSLMKLIPENEYRPWLNVLLIRVYAQEDWFEAMEKSIDEAFEHKISVTTTGVMRSIIS 420

Query: 421 SYFRCNAVDKLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDW 480
           SYFRCN VD+L NFV RA  + WR  RSLYHCKMVM+AS+KR EEMESVL+EM+N NL  
Sbjct: 421 SYFRCNEVDRLENFVKRAAWARWRTFRSLYHCKMVMYASQKRLEEMESVLNEMENFNLGC 480

Query: 481 TKKTFWILYKAYSLSGCRYKVDQVSCYMCKLGYGIPSD 510
           TK+TFWILYKAYS  G RYKV ++   M K GY +P D
Sbjct: 481 TKRTFWILYKAYSRCGQRYKVAKIIGLMWKHGYDVPLD 515

The following BLAST results are available for this feature:

BLAST of Carg25209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923507.1	2.1e-220	99.22	pentatricopeptide repeat-containing protein At2g30780 [Cucurbita moschata] >XP_0...	[more]
XP_023553032.1	3.4e-215	97.47	pentatricopeptide repeat-containing protein At2g30780 [Cucurbita pepo subsp. pep...	[more]
XP_023007782.1	4.8e-201	94.13	pentatricopeptide repeat-containing protein At2g30780 [Cucurbita maxima] >XP_023...	[more]
XP_022145941.1	3.9e-179	85.77	pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_...	[more]
XP_008448953.1	6.5e-166	82.65	PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Cucumis melo]	[more]

BLAST of Carg25209 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30780.1	4.7e-78	54.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G48000.1	1.8e-64	52.73	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G39620.1	1.5e-10	30.77	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G06430.1	3.7e-06	30.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02370.1	4.5e-04	25.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg25209 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49343\|PP177_ARATH	8.6e-77	54.16	Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9ZU88\|PP204_ARATH	3.2e-63	52.73	Pentatricopeptide repeat-containing protein At2g48000 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SV96\|PP358_ARATH	2.6e-09	30.77	Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop...	[more]
sp\|A7LN87\|PPR5_MAIZE	7.6e-09	30.99	Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4...	[more]
sp\|A3ABE1\|PPR5_ORYSJ	6.5e-08	33.10	Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza...	[more]

BLAST of Carg25209 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKY2\|A0A1S3BKY2_CUCME	4.3e-166	82.65	pentatricopeptide repeat-containing protein At2g30780 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0L4I3\|A0A0A0L4I3_CUCSA	2.1e-165	81.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038710 PE=4 SV=1	[more]
tr\|D7TP76\|D7TP76_VITVI	1.2e-120	75.88	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00910 PE=4 SV=...	[more]
tr\|A0A2N9II45\|A0A2N9II45_FAGSY	3.3e-118	69.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51605 PE=4 SV=1	[more]
tr\|M5W6D5\|M5W6D5_PRUPE	1.5e-115	61.39	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G249700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25209-RA	Carg25209-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 82..236 e-value: 8.5E-18 score: 66.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 333..508 e-value: 3.1E-6 score: 28.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 239..327 e-value: 1.6E-11 score: 46.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 192..225 e-value: 2.3E-4 score: 19.1 coord: 263..296 e-value: 6.2E-5 score: 20.9 coord: 227..261 e-value: 3.1E-4 score: 18.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 259..307 e-value: 3.3E-10 score: 39.9 coord: 189..236 e-value: 4.8E-9 score: 36.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 330..367 score: 5.514
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 437..471 score: 6.259
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 260..294 score: 10.435
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 295..325 score: 6.292
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 189..224 score: 7.947
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 225..259 score: 8.221
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 31..510
None	No IPR available	PANTHER	PTHR24015:SF826	SUBFAMILY NOT NAMED	coord: 31..510

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25209	Csa3G038710	Cucumber (Chinese Long) v2	carcuB0014
Carg25209	MELO3C014018	Melon (DHL92) v3.5.1	carmeB0015
Carg25209	ClCG00G000230	Watermelon (Charleston Gray)	carwcgB0014
Carg25209	ClCG10G003500	Watermelon (Charleston Gray)	carwcgB0016
Carg25209	CSPI03G03450	Wild cucumber (PI 183967)	carcpiB0014
Carg25209	CmaCh16G010230	Cucurbita maxima (Rimu)	carcmaB0024
Carg25209	CmoCh16G010620	Cucurbita moschata (Rifu)	carcmoB0025
Carg25209	Lsi07G013790	Bottle gourd (USVL1VR-Ls)	carlsiB013
Carg25209	Cp4.1LG14g08350	Cucurbita pepo (Zucchini)	carcpeB0028
Carg25209	CsGy3G003430	Cucumber (Gy14) v2	carcgybB0013
Carg25209	MELO3C014018.2	Melon (DHL92) v3.6.1	carmedB0016
Carg25209	CsaV3_3G003500	Cucumber (Chinese Long) v3	carcucB0014
Carg25209	Cla97C10G188040	Watermelon (97103) v2	carwmbB0013
Carg25209	Bhi11G000289	Wax gourd	carwgoB0016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25209	Silver-seed gourd	carcarB015
Carg25209	Cucurbita maxima (Rimu)	carcmaB0025
Carg25209	Cucurbita moschata (Rifu)	carcmoB0026
Carg25209	Cucurbita pepo (Zucchini)	carcpeB0029