Carg25086 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25086
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ras-related GTP-binding protein
Location	Cucurbita_argyrosperma_scaffold_072 : 161282 .. 164895 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTCTTCATTTCTTCAATTTCTTCGTCTCTCTACCCCTCTTTTTCTCTCTTATCCGGCGACCGATCTTCCTCCGGTCAATTTTTTGCCGGCAGGTCCTCTCATCGCATCGATCTCTTCTCAATTACTTAACTCCGCTATCTTATTAGCCATGAATCCGGAATAGTAAGCTCGATTTTTTCTTCTTCTTGTTTTTTGATTCAATTTGTCGATTGGAAGCCCTTGTTTTGTTGTCGTTTTTTGCTGAATTGGGTTAGATCTGGTCGATGAGGAAGATGGAACTTCTTTTAGAAATATGTTTTGTGTTGGATGGTTTAGCTAATTGGGGAATTTTCGATGGTGGTTCTGTTTTTTATGATTTGGTTGAAATATAGGTGATCGATTCGAGATCTCAATTTATCTACCGCTTGTGAAAGTGACCGTTTGAATTTCTTGTTTCTTCTCGAAATGAAGGTGTTTGATTGTCAATTTGGTTGGCGATTTTGATAATCAACTTGTAATTTGTTTGGAGTTATTTCGGTAATTTCTTAAATTTAATCGTTTGGTTATATGTAATCTTTGAATCCTCGAGGAATTTATTCCTCTCTCGCTGTAGGAGTTGTGATATTAAGTAGTAGGGTCTTTTTAACAGTGGCGAATTTGGTGCAATTTTTTTATCCGTTCTTGTATTTGCAGCGACTATTTGTTTAAGCTTCTGCTTATCGGAGACTCGGGAGTTGGAAAATCTTGTCTTCTACTGAGGTTTGCTGTAAGTTGTCTCTACAAAAACTTTCTTCCAACTGTTTCTTCTTATTTTCTGTTTCCTGTTGAGTTGGTAGCTACTGCGTTAGGTAATACATATGGCTTTGCTGGACGAAATTCGCAACAAAACAATCAAAACGCTGTGTTCTTTGTTGGGTCCCAGTAGTTAGCACCTAATCCATTTGTTTCCTCCCCTTTTTCCGTTGTTCCTTTCCATGCAGGACGATGTATATATAAGTTATCGTCACCGAAAGATCTCCTAAACAATTGCTTTCTGTTATCACAACTAAATAAGTTGTTCACAGTGATTAATTATCTTTAGATTTTATAGAAATCCTCGCTTTATGTAATAGTGACTCCCATGACTTCTGCATTGGTTGAGAGTTTCGAGTTGCTCACGATTGACATTTATTGTGTTAGTTAGAAGGTAGTTTGTTGATTAGGTATATTATATATTCTCTTGTTCCTTAATTAATTCCTTCTTTTTTTTCAAATCAGGATGACTCATATCTCGATAGCTACATTAGCACCATTGGAGTTGACTTTGTAAGCTTCTATCACATATTTGGTCTTCTATTCTGATAATTACTACATGATTTTTTCAGCTCTAATACTTGAAATAAATTATTACTTGTAGAAAATCCGTACTGTGGAACAGGATGGAAAGACCATTAAACTTCAAATTGTAAGTTTGAATTTTTCAATTGTTCTTGCTTTAATCGAAGCTTAGAGGACTATTTACTTGAGTGACTGTTTTATTTGTTCAAAAATCCTTTCTAGTCTGTAATTATGCTGTTCTTCTGTTGGTAAAATCAAATTTAACCGTAGATCTTTAGGAGGGGAGAAAGAAAGAGAGTGAGAGTGTAATGACCCAGATCCACTGCTAGCAGATATTGTCCCATTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGGAAGGTTTCCACCCTTATAAATGGTGGTTTGTTCTCCTCTCCAACCAAAATGTGGGACATCACAGTCCACCCCCCTTCAGGGCCTAGCGTCCTCGTTGGCACTCTTTCCTTCGATCGATGTGGAACCGCCCCCAAATGCTCCCCCTTTGGAGCCCAGCGTCCTTACTGGCACACCACCTCGTGTCTACCCCCTTCGGGGAACAGCAAGAAGGCTGGCACATCGTCCGGTGTCTGGCTCTGATGCCATTAGTAACAACCCATATCCATCACTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAGGCTTTGAAACGCGTCTGCTAAGTGAACGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGACATCACAGAGAGGGAGAGAGAAGAGGAGTGGGGATGCATATGAATACTGCTTAAGAAGATTTCAATGCTGTTTTTTTGGTCTTTCCTGTTAATTGGTAATTTTTACCCTGAACTGTAGTGGGACACTGCCGGTCAAGAACGTTTTAGAACGATTACTAGCAGCTACTACCGTGGAGCTCATGGAATAATCGTAATTGCTACACTCTTCATTTTTCAGTTTCTTCTCCTGCCTTTTTTCATCTTCTTAAAGTGAAGTCTGTTTGCATATAATGTGCTGCCATGTAGGTCGTGTATGACGTTACAGATCAGGATAGCTTCAATAATGTTAAGCAATGGTTGAACGAAATAGACCGATATGCTAGTGAAAATGTGAACAAGCTTCTGGTTGGTAATAAATGTGATCTCACTGCAAATAAGGTCGTCTCCTATGAGACAGCGAAGGTAGTAATTTTACTTGGGCGTCTTTCATAAAAGTATGAATTTGGATCTTGAATATGAAAATCAAGACTAAAATTCGATTGTGACATCAATTATTTTCTGAAGGCCTTTGCGGATGAAATTGGAATTCCATTCATGGAAACAAGTGCTAAAAGCGCGACGAATGTGGAAGAGGCTTTCATGGCCATGGCTGCTGAAATAAAGAACAGGTACGAACACTGGCAACAGAGACAGCCTACTCGCTTACCCTTTTCATTTTTTCTGTTTTCGTTTTCGTTTTCTTCAATTATTATTAGAATATTCATGAGTGTCTTAACTAGTTTAAACGTAATTATGCATACCCACGATGCTTTTGACCTATTCCTTCTAAGCCTTTTTAATTTTTCATGGGCTTCTATGATCATTAGTCTATCCCAAGCTGATTAGTTCTCGAGCTTACGAAGTTAATCCAAGCTTGGAACTTGAGCTGAACCTACCTTTTTAGCACTATGATCTCTTACTAGTTAGTTATCACGGAGAGGTAGGAAATGGGAGTTGTTAACCACCCCTAAAGGCTCCTAACGACTTCTAAGTTCTACCTTAATTCTTTACTCCACCGGGAGTAGCTCCATTCCTGAGACACGATGGCACAACGCGTTCCATCTATACAAAGCAGCAACCACCCATCTTTACTTGATTTCATTGTTTAGGGGTTCATTTTTTGTAGGATGGCGACACAGCCGATGAACAATGCAAGGCCACCGACAGTGAACATTCGAGGACAACCTGTGAATCAGAAAACTGGTTGCTGCTCTTCTTAAAGATGAATGGCTCTTATTGAATGGTTGACAGATGGTGATGGTGATGTTTATGTATGGACGGTGACATGTAAGACTAGTTGTCTCTCTCTCTCTCTCTCTCTATGCTTTTCGTATAAAAAGATTCGTCGGTCGTGAAATGATTTGCCTTTGCCTTTTATTTTCTCGTCTTTTGAAGTCGAACTATGTTAACACCTCCATTCTTTCGAATATATTTGTTTCTGGATCAAACATTATTCAGGTGTAAAATTTAGATATCAATGAACAGTAGTAGTATTTGCTTC

mRNA sequence

CTTCTCTTCATTTCTTCAATTTCTTCGTCTCTCTACCCCTCTTTTTCTCTCTTATCCGGCGACCGATCTTCCTCCGGTCAATTTTTTGCCGGCAGGTCCTCTCATCGCATCGATCTCTTCTCAATTACTTAACTCCGCTATCTTATTAGCCATGAATCCGGAATAGTGTTTGATTGTCAATTTGGTTGGCGATTTTGATAATCAACTTGTAATTTGTTTGGAGTTATTTCGCGACTATTTGTTTAAGCTTCTGCTTATCGGAGACTCGGGAGTTGGAAAATCTTGTCTTCTACTGAGGTTTGCTGATGACTCATATCTCGATAGCTACATTAGCACCATTGGAGTTGACTTTAAAATCCGTACTGTGGAACAGGATGGAAAGACCATTAAACTTCAAATTTGGGACACTGCCGGTCAAGAACGTTTTAGAACGATTACTAGCAGCTACTACCGTGGAGCTCATGGAATAATCGTCGTGTATGACGTTACAGATCAGGATAGCTTCAATAATGTTAAGCAATGGTTGAACGAAATAGACCGATATGCTAGTGAAAATGTGAACAAGCTTCTGGTTGGTAATAAATGTGATCTCACTGCAAATAAGGTCGTCTCCTATGAGACAGCGAAGGCCTTTGCGGATGAAATTGGAATTCCATTCATGGAAACAAGTGCTAAAAGCGCGACGAATGTGGAAGAGGCTTTCATGGCCATGGCTGCTGAAATAAAGAACAGGATGGCGACACAGCCGATGAACAATGCAAGGCCACCGACAGTGAACATTCGAGGACAACCTGTGAATCAGAAAACTGGTTGCTGCTCTTCTTAAAGATGAATGGCTCTTATTGAATGGTTGACAGATGGTGATGGTGATGTTTATGTATGGACGGTGACATGTAAGACTAGTTGTCTCTCTCTCTCTCTCTCTCTATGCTTTTCGTATAAAAAGATTCGTCGGTCGTGAAATGATTTGCCTTTGCCTTTTATTTTCTCGTCTTTTGAAGTCGAACTATGTTAACACCTCCATTCTTTCGAATATATTTGTTTCTGGATCAAACATTATTCAGGTGTAAAATTTAGATATCAATGAACAGTAGTAGTATTTGCTTC

Coding sequence (CDS)

ATGGAAACAAGTGCTAAAAGCGCGACGAATGTGGAAGAGGCTTTCATGGCCATGGCTGCTGAAATAAAGAACAGGATGGCGACACAGCCGATGAACAATGCAAGGCCACCGACAGTGAACATTCGAGGACAACCTGTGAATCAGAAAACTGGTTGCTGCTCTTCTTAA

Protein sequence

METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

Homology

[Close]

BLAST of Carg25086 vs. NCBI nr
Match: XP_022931789.1 (ras-related protein RABD2c [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 5.2e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
Sbjct: 148 METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 202

[Close]

BLAST of Carg25086 vs. NCBI nr
Match: XP_023554189.1 (GTP-binding protein YPTM2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVE+AFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
Sbjct: 148 METSAKSATNVEDAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 202

[Close]

BLAST of Carg25086 vs. NCBI nr
Match: XP_004148356.1 (PREDICTED: ras-related protein RABD2c [Cucumis sativus] >XP_008465881.1 PREDICTED: ras-related protein RABD2c [Cucumis melo] >KGN60467.1 hypothetical protein Csa_3G913980 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK+GCCSS
Sbjct: 148 METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKSGCCSS 202

[Close]

BLAST of Carg25086 vs. NCBI nr
Match: XP_022971849.1 (ras-related protein RABD2c-like [Cucurbita maxima])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNI+GQPVNQKTGCCSS
Sbjct: 148 METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIQGQPVNQKTGCCSS 202

[Close]

BLAST of Carg25086 vs. NCBI nr
Match: XP_022159480.1 (ras-related protein RABD2c [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK GCCSS
Sbjct: 148 METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKAGCCSS 202

[Close]

BLAST of Carg25086 vs. TAIR10
Match: AT5G47200.1 (RAB GTPase homolog 1A)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-17
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           +ETSAK+ATNVEEAFMAM A IK RMA+QP   A+PPTV IRGQPVNQ++GCCSS
Sbjct: 148 LETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Carg25086 vs. TAIR10
Match: AT4G17530.1 (RAB GTPase homolog 1C)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-17
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           +ETSAK+ATNVEEAFMAM A IK RMA+QP   ++PPTV IRGQPVNQ++GCCSS
Sbjct: 148 LETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Carg25086 vs. TAIR10
Match: AT1G02130.1 (RAS 5)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-17
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPM-NNARPPTVNIRGQPVNQKTGCCSS 56
           METSAK ATNVE+AFMAM+A IK RMA+QP  NNARPPTV IRGQPV QK GCCS+
Sbjct: 148 METSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCST 203

[Close]

BLAST of Carg25086 vs. TAIR10
Match: AT3G11730.1 (Ras-related small GTP-binding family protein)

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-07
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNN--ARPPTVNIRGQPVNQKTGCC 54
           +ETSAK + NVE+AF+ +A EIK +M +Q   N  + P TV ++GQP+ Q  G C
Sbjct: 148 LETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202

[Close]

BLAST of Carg25086 vs. Swiss-Prot
Match: sp|Q9FPJ4|RAD2B_ARATH (Ras-related protein RABD2b OS=Arabidopsis thaliana OX=3702 GN=RABD2B PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-16
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           +ETSAK+ATNVEEAFMAM A IK RMA+QP   A+PPTV IRGQPVNQ++GCCSS
Sbjct: 148 LETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Carg25086 vs. Swiss-Prot
Match: sp|Q9SEH3|RAD2C_ARATH (Ras-related protein RABD2c OS=Arabidopsis thaliana OX=3702 GN=RABD2C PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.5e-16
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           +ETSAK+ATNVEEAFMAM A IK RMA+QP   ++PPTV IRGQPVNQ++GCCSS
Sbjct: 148 LETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Carg25086 vs. Swiss-Prot
Match: sp|P28188|RAD2A_ARATH (Ras-related protein RABD2a OS=Arabidopsis thaliana OX=3702 GN=RABD2A PE=1 SV=3)

HSP 1 Score: 84.0 bits (206), Expect = 5.9e-16
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPM-NNARPPTVNIRGQPVNQKTGCCSS 56
           METSAK ATNVE+AFMAM+A IK RMA+QP  NNARPPTV IRGQPV QK GCCS+
Sbjct: 148 METSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCST 203

[Close]

BLAST of Carg25086 vs. Swiss-Prot
Match: sp|Q05737|YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays OX=4577 GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-15
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQP-MNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAK+ATNV++AFMAMAA IK+RMA+QP   NARP TV IRGQPVNQKT CCSS
Sbjct: 148 METSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCCSS 203

[Close]

BLAST of Carg25086 vs. Swiss-Prot
Match: sp|P40392|RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC1 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-12
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNA-RPPTVNIRGQPVNQKTGCCS 55
           +ETSAK ATNVE+AFM MA EIKNRMA+QP  NA +P TV +RGQPV Q++ CCS
Sbjct: 148 LETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS 202

[Close]

BLAST of Carg25086 vs. TrEMBL
Match: tr|A0A1S3CQ93|A0A1S3CQ93_CUCME (ras-related protein RABD2c OS=Cucumis melo OX=3656 GN=LOC103503466 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK+GCCSS
Sbjct: 148 METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKSGCCSS 202

[Close]

BLAST of Carg25086 vs. TrEMBL
Match: tr|A0A0A0LID7|A0A0A0LID7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G913980 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK+GCCSS
Sbjct: 148 METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKSGCCSS 202

[Close]

BLAST of Carg25086 vs. TrEMBL
Match: tr|A0A1S3BJX6|A0A1S3BJX6_CUCME (GTP-binding protein YPTM2-like OS=Cucumis melo OX=3656 GN=LOC103490855 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVE+AFMAMAAEIKNRMATQPMNNARPPTV IRGQPVNQK+GCCSS
Sbjct: 148 METSAKSATNVEQAFMAMAAEIKNRMATQPMNNARPPTVQIRGQPVNQKSGCCSS 202

[Close]

BLAST of Carg25086 vs. TrEMBL
Match: tr|A0A0A0L5E9|A0A0A0L5E9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017260 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVE+AFMAMAAEIKNRMATQPMNNARPPTV IRGQPVNQK+GCCSS
Sbjct: 148 METSAKSATNVEQAFMAMAAEIKNRMATQPMNNARPPTVQIRGQPVNQKSGCCSS 202

[Close]

BLAST of Carg25086 vs. TrEMBL
Match: tr|A0A2N9G4I7|A0A2N9G4I7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21906 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS 56
           METSAKSATNVE+AFMAMAAEIKNRMA+QPMNNARPPTV IRGQPVNQK+GCCSS
Sbjct: 148 METSAKSATNVEQAFMAMAAEIKNRMASQPMNNARPPTVQIRGQPVNQKSGCCSS 202

The following BLAST results are available for this feature:

BLAST of Carg25086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931789.1	5.2e-21	100.00	ras-related protein RABD2c [Cucurbita moschata]	[more]
XP_023554189.1	1.2e-20	98.18	GTP-binding protein YPTM2 [Cucurbita pepo subsp. pepo]	[more]
XP_004148356.1	1.5e-20	98.18	PREDICTED: ras-related protein RABD2c [Cucumis sativus] >XP_008465881.1 PREDICTE...	[more]
XP_022971849.1	1.5e-20	98.18	ras-related protein RABD2c-like [Cucurbita maxima]	[more]
XP_022159480.1	2.0e-20	98.18	ras-related protein RABD2c [Momordica charantia]	[more]

BLAST of Carg25086 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47200.1	1.1e-17	76.36	RAB GTPase homolog 1A	[more]
AT4G17530.1	2.5e-17	74.55	RAB GTPase homolog 1C	[more]
AT1G02130.1	3.2e-17	78.57	RAS 5	[more]
AT3G11730.1	6.8e-07	47.27	Ras-related small GTP-binding family protein	[more]

BLAST of Carg25086 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FPJ4\|RAD2B_ARATH	2.0e-16	76.36	Ras-related protein RABD2b OS=Arabidopsis thaliana OX=3702 GN=RABD2B PE=2 SV=1	[more]
sp\|Q9SEH3\|RAD2C_ARATH	4.5e-16	74.55	Ras-related protein RABD2c OS=Arabidopsis thaliana OX=3702 GN=RABD2C PE=1 SV=1	[more]
sp\|P28188\|RAD2A_ARATH	5.9e-16	78.57	Ras-related protein RABD2a OS=Arabidopsis thaliana OX=3702 GN=RABD2A PE=1 SV=3	[more]
sp\|Q05737\|YPTM2_MAIZE	1.7e-15	78.57	GTP-binding protein YPTM2 OS=Zea mays OX=4577 GN=YPTM2 PE=2 SV=1	[more]
sp\|P40392\|RIC1_ORYSJ	1.0e-12	69.09	Ras-related protein RIC1 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC1 PE=2 S...	[more]

BLAST of Carg25086 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQ93\|A0A1S3CQ93_CUCME	1.0e-20	98.18	ras-related protein RABD2c OS=Cucumis melo OX=3656 GN=LOC103503466 PE=4 SV=1	[more]
tr\|A0A0A0LID7\|A0A0A0LID7_CUCSA	1.0e-20	98.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G913980 PE=4 SV=1	[more]
tr\|A0A1S3BJX6\|A0A1S3BJX6_CUCME	1.1e-19	94.55	GTP-binding protein YPTM2-like OS=Cucumis melo OX=3656 GN=LOC103490855 PE=4 SV=1	[more]
tr\|A0A0A0L5E9\|A0A0A0L5E9_CUCSA	1.1e-19	94.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017260 PE=4 SV=1	[more]
tr\|A0A2N9G4I7\|A0A2N9G4I7_FAGSY	3.2e-19	92.73	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21906 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25086-RA	Carg25086-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 1..53 e-value: 3.4E-5 score: 25.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..55
None	No IPR available	PANTHER	PTHR24073:SF666	RAS-RELATED PROTEIN RABD2B-RELATED	coord: 1..52
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..52

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25086	Cla97C09G175580	Watermelon (97103) v2	carwmbB0218
Carg25086	Bhi05G000432	Wax gourd	carwgoB0268

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25086	Carg08797	Silver-seed gourd	carcarB253

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25086	Cucumber (Gy14) v2	carcgybB0230
Carg25086	Cucumber (Gy14) v1	carcgyB0259
Carg25086	Cucurbita maxima (Rimu)	carcmaB0294
Carg25086	Cucurbita maxima (Rimu)	carcmaB0296
Carg25086	Cucurbita moschata (Rifu)	carcmoB0300
Carg25086	Cucurbita pepo (Zucchini)	carcpeB0305
Carg25086	Cucurbita pepo (Zucchini)	carcpeB0303
Carg25086	Wild cucumber (PI 183967)	carcpiB0247
Carg25086	Cucumber (Chinese Long) v2	carcuB0241
Carg25086	Cucumber (Chinese Long) v3	carcucB0245
Carg25086	Bottle gourd (USVL1VR-Ls)	carlsiB192
Carg25086	Melon (DHL92) v3.5.1	carmeB0221
Carg25086	Melon (DHL92) v3.6.1	carmedB0227
Carg25086	Watermelon (Charleston Gray)	carwcgB0210
Carg25086	Watermelon (97103) v1	carwmB0204