Carg25081 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25081
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GATA transcription factor 26-like
Location	Cucurbita_argyrosperma_scaffold_072 : 126447 .. 127189 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGCCAATATTTATGGTTCTCAAGCGACCCGGGCGCGTCGATGGAGAAGAAGTGTTATTCATCACATTGATCACTACTATGGCTTACCTCATGTCATATTGGTCTTCAGTAATTTGCCTGCAACGTCTCTATGTAACGTGAGCTTGGGTAGTTAGATATCGACTTTTTGTAAGTTGGGCAACATGTTATACCATCTCCATGCATTATTCTACCAGAAACTTATTGAGTTCTTATGAAACAATGGATAAAAGTTGGAACAACTCTTGTTCTTTGCTTTGTTGTATTGAAAATTCTACAGTTTCATTGATTGTTAGTTTAAGAATCTTTACTTCTGAGTATCTAATGCCCAAATGCTGGGACAGACACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACGAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAATAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGATGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTTAA

mRNA sequence

ATGCTAGCCAATATTTATGGTTCTCAAGCGACCCGGGCGCGTCGATGGAGAAGAAGTGTTATTCATCACATTGATCACTACTATGGCTTACCTCATGTCATATTGGTCTTCAGTAATTTGCCTGCAACGTCTCTATACACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACGAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAATAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGATGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTTAA

Coding sequence (CDS)

ATGCTAGCCAATATTTATGGTTCTCAAGCGACCCGGGCGCGTCGATGGAGAAGAAGTGTTATTCATCACATTGATCACTACTATGGCTTACCTCATGTCATATTGGTCTTCAGTAATTTGCCTGCAACGTCTCTATACACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACGAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAATAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGATGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTTAA

Protein sequence

MLANIYGSQATRARRWRRSVIHHIDHYYGLPHVILVFSNLPATSLYTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTG

Homology

[Close]

BLAST of Carg25081 vs. NCBI nr
Match: XP_022971837.1 (GATA transcription factor 26-like [Cucurbita maxima])

HSP 1 Score: 255.0 bits (650), Expect = 1.8e-64
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK
Sbjct: 15  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGS ISNPESCAHFSSADAS
Sbjct: 75  EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSVISNPESCAHFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. NCBI nr
Match: XP_023554174.1 (GATA transcription factor 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.2 bits (648), Expect = 3.1e-64
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK
Sbjct: 15  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRKLQQADGSIAW LPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS
Sbjct: 75  EVKLLKRKLQQADGSIAWTLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. NCBI nr
Match: XP_022931794.1 (GATA transcription factor 26-like [Cucurbita moschata])

HSP 1 Score: 252.7 bits (644), Expect = 9.0e-64
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK
Sbjct: 15  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRKLQQADGSI W LPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS
Sbjct: 75  EVKLLKRKLQQADGSIGWTLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. NCBI nr
Match: XP_004148382.1 (PREDICTED: GATA transcription factor 26-like [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPPDKPVLCNACGSRWRTKGTL NYTPLHAR  PDEYEDHR SR+KSISINKNK
Sbjct: 15  TPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRMKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRKLQQADGSI WM+PDQGQ YHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS
Sbjct: 75  EVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. NCBI nr
Match: KGN60460.1 (hypothetical protein Csa_3G912920 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPPDKPVLCNACGSRWRTKGTL NYTPLHAR  PDEYEDHR SR+KSISINKNK
Sbjct: 15  TPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRMKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRKLQQADGSI WM+PDQGQ YHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS
Sbjct: 75  EVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. TAIR10
Match: AT4G17570.2 (GATA transcription factor 26)

HSP 1 Score: 157.1 bits (396), Expect = 9.3e-39
Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 46  YTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYED-HRASRVKSISI-N 105
           YTPLWRNGPP+KPVLCNACGSRWRTKGTL NYTPLHAR   DE +D HR  R+KSIS+ N
Sbjct: 26  YTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARADGDENDDHHRFQRMKSISLGN 85

Query: 106 KNKEVKLLKRKLQQADGSIAWMLPDQGQDYH-RVVDEDTSNRSSSGSAISNPESCAHFSS 165
           KNKE+K+LKRK  Q +  I   + +        V++ED SNRSSSGSA+SN ESCA FSS
Sbjct: 86  KNKEIKMLKRKAIQENIIIKRPVFEFSYGLKAAVIEEDASNRSSSGSAVSNSESCAQFSS 145

Query: 166 ADASDLTG 171
           AD S+LTG
Sbjct: 146 ADGSELTG 153

[Close]

BLAST of Carg25081 vs. TAIR10
Match: AT5G47140.1 (GATA transcription factor 27)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-27
Identity = 68/125 (54.40%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPD--EYEDHRASRV--KSISI 106
           TPLWRNGPP+KPVLCNACGSRWRTKG+L NYTPLHAR   D  E EDHR   V  K +S+
Sbjct: 15  TPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDETEIEDHRTQTVMIKGMSL 74

Query: 107 NKNKEVKLLKRKLQQADGSIAWMLPDQGQDYHR-VVDEDTSNRSSSGSAISNPESCAHFS 166
           NK    K+ KRK  Q + ++     +    + R  +DE+ SNRSSSGS +SN ESCA  +
Sbjct: 75  NK----KIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSSGSVVSNSESCAQSN 134

[Close]

BLAST of Carg25081 vs. TAIR10
Match: AT3G21175.1 (ZIM-like 1)

HSP 1 Score: 47.8 bits (112), Expect = 8.0e-06
Identity = 25/77 (32.47%), Postives = 38/77 (49.35%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TP+ R GP     LCNACG  W  KGTL +     ++  P +   H       +S+NKN+
Sbjct: 229 TPMMRRGPDGPRTLCNACGLMWANKGTLRDL----SKVPPPQTPQH-------LSLNKNE 288

Query: 107 EVKLLKRKLQQADGSIA 124
           +  L   ++ +  G I+
Sbjct: 289 DANLEADQMMEVTGDIS 294

[Close]

BLAST of Carg25081 vs. TAIR10
Match: AT3G45170.1 (GATA transcription factor 14)

HSP 1 Score: 45.4 bits (106), Expect = 4.0e-05
Identity = 19/33 (57.58%), Postives = 20/33 (60.61%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTP 80
           TPLWR GP     LCNACG R+RT   L  Y P
Sbjct: 125 TPLWREGPRGAGTLCNACGMRYRTGRLLPEYRP 157

[Close]

BLAST of Carg25081 vs. TAIR10
Match: AT3G51080.1 (GATA transcription factor 6)

HSP 1 Score: 44.7 bits (104), Expect = 6.8e-05
Identity = 23/61 (37.70%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TP WR GP     LCNACG R+++   L  Y P  + T   E   +  S+V  I + + K
Sbjct: 231 TPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSKV--IEMRRKK 289

Query: 107 E 108
           E
Sbjct: 291 E 289

[Close]

BLAST of Carg25081 vs. Swiss-Prot
Match: sp|Q8W4H1|GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-34
Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYED-HRASRVKSISI-NK 106
           TPLWRNGPP+KPVLCNACGSRWRTKGTL NYTPLHAR   DE +D HR  R+KSIS+ NK
Sbjct: 15  TPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARADGDENDDHHRFQRMKSISLGNK 74

Query: 107 NKEVKLLKRKLQQADGSIAWMLPDQGQDYH-RVVDEDTSNRSSSGSAISNPESCAHFSSA 166
           NKE+K+LKRK  Q +  I   + +        V++ED SNRSSSGSA+SN ESCA FSSA
Sbjct: 75  NKEIKMLKRKAIQENIIIKRPVFEFSYGLKAAVIEEDASNRSSSGSAVSNSESCAQFSSA 134

[Close]

BLAST of Carg25081 vs. Swiss-Prot
Match: sp|Q5PP38|GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana OX=3702 GN=GATA27 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-26
Identity = 68/125 (54.40%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPD--EYEDHRASRV--KSISI 106
           TPLWRNGPP+KPVLCNACGSRWRTKG+L NYTPLHAR   D  E EDHR   V  K +S+
Sbjct: 15  TPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDETEIEDHRTQTVMIKGMSL 74

Query: 107 NKNKEVKLLKRKLQQADGSIAWMLPDQGQDYHR-VVDEDTSNRSSSGSAISNPESCAHFS 166
           NK    K+ KRK  Q + ++     +    + R  +DE+ SNRSSSGS +SN ESCA  +
Sbjct: 75  NK----KIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSSGSVVSNSESCAQSN 134

[Close]

BLAST of Carg25081 vs. Swiss-Prot
Match: sp|Q8GXL7|GAT24_ARATH (GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 25/77 (32.47%), Postives = 38/77 (49.35%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TP+ R GP     LCNACG  W  KGTL +     ++  P +   H       +S+NKN+
Sbjct: 229 TPMMRRGPDGPRTLCNACGLMWANKGTLRDL----SKVPPPQTPQH-------LSLNKNE 288

Query: 107 EVKLLKRKLQQADGSIA 124
           +  L   ++ +  G I+
Sbjct: 289 DANLEADQMMEVTGDIS 294

[Close]

BLAST of Carg25081 vs. Swiss-Prot
Match: sp|Q9M1U2|GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana OX=3702 GN=GATA14 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.1e-04
Identity = 19/33 (57.58%), Postives = 20/33 (60.61%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTP 80
           TPLWR GP     LCNACG R+RT   L  Y P
Sbjct: 125 TPLWREGPRGAGTLCNACGMRYRTGRLLPEYRP 157

[Close]

BLAST of Carg25081 vs. Swiss-Prot
Match: sp|Q550D5|GTAA_DICDI (Transcription factor stalky OS=Dictyostelium discoideum OX=44689 GN=stkA PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.1e-04
Identity = 18/29 (62.07%), Postives = 19/29 (65.52%), Query Frame = 0


Query: 44  SLYTPLWRNGPPDKPVLCNACGSRWRTKG 73
           S  TP WR GP  K  LCNACG +WR KG
Sbjct: 299 SSQTPTWRRGPSGKGSLCNACGIKWRLKG 327

[Close]

BLAST of Carg25081 vs. TrEMBL
Match: tr|A0A0A0LEK2|A0A0A0LEK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912920 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 8.0e-61
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPPDKPVLCNACGSRWRTKGTL NYTPLHAR  PDEYEDHR SR+KSISINKNK
Sbjct: 15  TPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRMKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRKLQQADGSI WM+PDQGQ YHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS
Sbjct: 75  EVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. TrEMBL
Match: tr|A0A1S3CQA3|A0A1S3CQA3_CUCME (GATA transcription factor 26-like OS=Cucumis melo OX=3656 GN=LOC103503476 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-59
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPPDKPVLCNACGSRWRTKGTL NYTPLHAR  PDEYEDH+ SR+KSIS+NKNK
Sbjct: 15  TPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHKVSRMKSISLNKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRKLQQADGS  WM+PDQGQ YHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS
Sbjct: 75  EVKLLKRKLQQADGSSGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. TrEMBL
Match: tr|A0A2I4F0C5|A0A2I4F0C5_9ROSI (GATA transcription factor 26-like isoform X6 OS=Juglans regia OX=51240 GN=LOC108994378 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.0e-48
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPP+KPVLCNACGSRWRTKGTL NYTPLHAR  PDEYEDHR SR+KSISINKNK
Sbjct: 15  TPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDEYEDHRVSRMKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRK +  +  +A  +PD  Q + +++DEDTSNRSSSGSAISN ESCA FSSADAS
Sbjct: 75  EVKLLKRKQKSDNMVVASGVPDYNQGFRKMIDEDTSNRSSSGSAISNSESCAQFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. TrEMBL
Match: tr|A0A2I4F0C1|A0A2I4F0C1_9ROSI (GATA transcription factor 26-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108994378 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.0e-48
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPP+KPVLCNACGSRWRTKGTL NYTPLHAR  PDEYEDHR SR+KSISINKNK
Sbjct: 15  TPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDEYEDHRVSRMKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRK +  +  +A  +PD  Q + +++DEDTSNRSSSGSAISN ESCA FSSADAS
Sbjct: 75  EVKLLKRKQKSDNMVVASGVPDYNQGFRKMIDEDTSNRSSSGSAISNSESCAQFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

[Close]

BLAST of Carg25081 vs. TrEMBL
Match: tr|A0A2I4F0B9|A0A2I4F0B9_9ROSI (GATA transcription factor 26-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108994378 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.0e-48
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 47  TPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNK 106
           TPLWRNGPP+KPVLCNACGSRWRTKGTL NYTPLHAR  PDEYEDHR SR+KSISINKNK
Sbjct: 15  TPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDEYEDHRVSRMKSISINKNK 74

Query: 107 EVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADAS 166
           EVKLLKRK +  +  +A  +PD  Q + +++DEDTSNRSSSGSAISN ESCA FSSADAS
Sbjct: 75  EVKLLKRKQKSDNMVVASGVPDYNQGFRKMIDEDTSNRSSSGSAISNSESCAQFSSADAS 134

Query: 167 DLTG 171
           DLTG
Sbjct: 135 DLTG 138

The following BLAST results are available for this feature:

BLAST of Carg25081 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971837.1	1.8e-64	99.19	GATA transcription factor 26-like [Cucurbita maxima]	[more]
XP_023554174.1	3.1e-64	99.19	GATA transcription factor 26-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931794.1	9.0e-64	98.39	GATA transcription factor 26-like [Cucurbita moschata]	[more]
XP_004148382.1	1.2e-60	93.55	PREDICTED: GATA transcription factor 26-like [Cucumis sativus]	[more]
KGN60460.1	1.2e-60	93.55	hypothetical protein Csa_3G912920 [Cucumis sativus]	[more]

BLAST of Carg25081 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17570.2	9.3e-39	66.41	GATA transcription factor 26	[more]
AT5G47140.1	1.7e-27	54.40	GATA transcription factor 27	[more]
AT3G21175.1	8.0e-06	32.47	ZIM-like 1	[more]
AT3G45170.1	4.0e-05	57.58	GATA transcription factor 14	[more]
AT3G51080.1	6.8e-05	37.70	GATA transcription factor 6	[more]

BLAST of Carg25081 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W4H1\|GAT26_ARATH	1.0e-34	65.85	GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1	[more]
sp\|Q5PP38\|GAT27_ARATH	3.0e-26	54.40	GATA transcription factor 27 OS=Arabidopsis thaliana OX=3702 GN=GATA27 PE=2 SV=1	[more]
sp\|Q8GXL7\|GAT24_ARATH	1.4e-04	32.47	GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2	[more]
sp\|Q9M1U2\|GAT14_ARATH	7.1e-04	57.58	GATA transcription factor 14 OS=Arabidopsis thaliana OX=3702 GN=GATA14 PE=2 SV=1	[more]
sp\|Q550D5\|GTAA_DICDI	7.1e-04	62.07	Transcription factor stalky OS=Dictyostelium discoideum OX=44689 GN=stkA PE=1 SV...	[more]

BLAST of Carg25081 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEK2\|A0A0A0LEK2_CUCSA	8.0e-61	93.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912920 PE=4 SV=1	[more]
tr\|A0A1S3CQA3\|A0A1S3CQA3_CUCME	1.5e-59	91.13	GATA transcription factor 26-like OS=Cucumis melo OX=3656 GN=LOC103503476 PE=4 S...	[more]
tr\|A0A2I4F0C5\|A0A2I4F0C5_9ROSI	6.0e-48	78.23	GATA transcription factor 26-like isoform X6 OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|A0A2I4F0C1\|A0A2I4F0C1_9ROSI	6.0e-48	78.23	GATA transcription factor 26-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|A0A2I4F0B9\|A0A2I4F0B9_9ROSI	6.0e-48	78.23	GATA transcription factor 26-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR039355	Transcription_factor_GATA
IPR013088	Znf_NHR/GATA
IPR000679	Znf_GATA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25081-RA	Carg25081-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 31..87 e-value: 0.0054 score: 12.6
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 47..73 e-value: 2.3E-10 score: 39.8
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 47..86 e-value: 4.41004E-11 score: 53.9158
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	G3DSA:3.30.50.10		coord: 43..81 e-value: 1.9E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..170
None	No IPR available	PANTHER	PTHR10071:SF290	SUBFAMILY NOT NAMED	coord: 47..170
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 46..78
IPR039355	Transcription factor GATA	PANTHER	PTHR10071	TRANSCRIPTION FACTOR GATA GATA BINDING FACTOR	coord: 47..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25081	MELO3C003334	Melon (DHL92) v3.5.1	carmeB0221

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25081	Bottle gourd (USVL1VR-Ls)	carlsiB192
Carg25081	Melon (DHL92) v3.6.1	carmedB0227
Carg25081	Watermelon (Charleston Gray)	carwcgB0210
Carg25081	Watermelon (97103) v1	carwmB0204
Carg25081	Watermelon (97103) v2	carwmbB0218
Carg25081	Wax gourd	carwgoB0268
Carg25081	Silver-seed gourd	carcarB253
Carg25081	Cucumber (Gy14) v2	carcgybB0230
Carg25081	Cucumber (Gy14) v1	carcgyB0259
Carg25081	Cucurbita maxima (Rimu)	carcmaB0294
Carg25081	Cucurbita maxima (Rimu)	carcmaB0296
Carg25081	Cucurbita moschata (Rifu)	carcmoB0300
Carg25081	Cucurbita pepo (Zucchini)	carcpeB0305
Carg25081	Cucurbita pepo (Zucchini)	carcpeB0303
Carg25081	Wild cucumber (PI 183967)	carcpiB0247
Carg25081	Cucumber (Chinese Long) v2	carcuB0241
Carg25081	Cucumber (Chinese Long) v3	carcucB0245