Carg25054 (gene) Silver-seed gourd

Overview
NameCarg25054
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc finger protein
LocationCucurbita_argyrosperma_scaffold_201 : 268000 .. 268539 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA

mRNA sequence

ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA

Coding sequence (CDS)

ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA

Protein sequence

MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGCYRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSWHEQYSKSTKRNESLELECLDLSLKL
Homology
[Close]
BLAST of Carg25054 vs. NCBI nr
Match: XP_023548450.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 84/235 (35.74%), Postives = 105/235 (44.68%), Query Frame = 0 

Query: 14  DSQTETKQSPKDKSHQPFTLNLSPNNDN-DL------EELNLIDIF---------GHACK 73
           DS  E K     K   P  ++L P+  N DL      EELNLID F          H  K
Sbjct: 2   DSPPEIKDPSDSKDISPGLVSLDPSLSNKDLGGSLMPEELNLIDFFSADNLPNDTSHEGK 61

Query: 74  EEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFE---------------DP 133
           E AA+PRVFSCN+C R+F SSQALGGHQNAH+R+RK+A+ G +                P
Sbjct: 62  EAAAKPRVFSCNFCPREFSSSQALGGHQNAHNRKRKMAQTGHKLVTNSTDCKQSSVSSLP 121

Query: 134 FIGCYRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWR---------------GGWKAS 180
           F G +  S G+Q +SM+ + F   H     V GSFRS+                G W  S
Sbjct: 122 FQG-FNRSLGIQMHSMIHKPF--SHAP---VFGSFRSFESKVWDRQPLYTQVASGIWPLS 181

[Close]
BLAST of Carg25054 vs. NCBI nr
Match: ERN08449.1 (hypothetical protein AMTR_s00150p00049910 [Amborella trichopoda])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 48/84 (57.14%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 42  DLEELNLIDIFGHACKE---EAA---EPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLA 101
           DL ELNLID           EA    EPRVF CNYCQRKF+SSQALGGHQNAH RER LA
Sbjct: 2   DLTELNLIDCLDSITDSPELEATGDREPRVFPCNYCQRKFYSSQALGGHQNAHKRERTLA 61

Query: 102 KAGFEDPFIGCYRSSFGVQTNSMV 120
           K G   P  G      G+Q +SM+
Sbjct: 62  KRGHRGPVFGHTAPVLGIQAHSMI 85

[Close]
BLAST of Carg25054 vs. NCBI nr
Match: PNX98449.1 (zinc finger protein 3-like [Trifolium pratense])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 0 

Query: 18  ETKQSPKDKSHQPFTLNLSPN---NDNDLEELNLIDIFGHACKEEAAE---------PRV 77
           +TK   +        L+LS     +D   +ELNL++ F     E ++E         PRV
Sbjct: 2   DTKHKNESSPQLVLDLSLSSKDSCDDESKQELNLLNCFHANLSESSSESSLDPNELDPRV 61

Query: 78  FSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPF------IGCYRSSFGVQTNSMV 137
           FSCNYCQRKF+SSQALGGHQNAH RER LA+ G+           G    S G+Q +SM+
Sbjct: 62  FSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMPSSMSSYGLCNKSLGIQVHSMI 121

Query: 138 LRKFYRKHGRGELVRGSFRSWRGGWKASAVD 151
            +  Y+K   G    G     + GWK    D
Sbjct: 122 NKPSYQKPFFGFCSNG-----QNGWKRQNFD 147

[Close]
BLAST of Carg25054 vs. NCBI nr
Match: PSS11198.1 (Zinc finger protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 57/136 (41.91%), Postives = 67/136 (49.26%), Query Frame = 0 

Query: 45  ELNLIDIFGHAC--------KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAK 104
           ELNLID   +          +E  AEPRVFSCNYCQRKFFSSQALGGHQNAH RER LAK
Sbjct: 62  ELNLIDCLNNDSTQTSPEIPQESDAEPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAK 121

Query: 105 AGFED----------------------PFIGCYRSSFGVQTNSMVLRKFYRKHGRGELVR 151
            G +                       P  G Y  S G+Q +SM+ +  Y     G  +R
Sbjct: 122 RGLKIGSPRGHSXXXXXXXXXXXXXSLPLHGAYNRSLGIQVHSMIHKPSYIPSSSG--IR 181

[Close]
BLAST of Carg25054 vs. NCBI nr
Match: XP_022154830.1 (zinc finger protein 1-like [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 78/232 (33.62%), Postives = 105/232 (45.26%), Query Frame = 0 

Query: 11  LQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDL-----EELNLIDIFGHAC-------KE 70
           L  D     +Q  KD S +  +L+L  +N++ +     EELNLID F   C        +
Sbjct: 18  LSTDELPWLRQVSKDISTE-VSLDLRLSNEDLVGSLMPEELNLIDSFDAICLPGTSSQGK 77

Query: 71  EAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGC------------ 130
           E A+PRV SCNYCQRKFFSSQALGGHQNAHSR+RKLAK G +   +              
Sbjct: 78  EVAKPRVLSCNYCQRKFFSSQALGGHQNAHSRQRKLAKIGRKLDHVSSEYKFSSVSSISL 137

Query: 131 --YRSSFGVQTNSMVLR-----------------------KFYRKHGRGELVRGSFRS-- 180
             +  S G+Q ++M+ +                         Y K   G     SF S  
Sbjct: 138 HGFNRSLGIQAHTMIQKPCASHAPIFGSFHPSELDVWDRQHLYTKLAAGRPSPESFLSGD 197

[Close]
BLAST of Carg25054 vs. TAIR10
Match: AT1G80730.1 (zinc-finger protein 1)

HSP 1 Score: 77.8 bits (190), Expect = 7.6e-15
Identity = 45/86 (52.33%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 24  KDKSHQPFTLNLS--PNNDNDLEELNLIDIF---------GHACKEEAAEPRVFSCNYCQ 83
           K + HQ   L L+          ELNLID F               + A+PRVFSCNYCQ
Sbjct: 15  KKQGHQDLELGLTLLSRGTATSSELNLIDSFKTSXXXXXXXXXXXXQLADPRVFSCNYCQ 74

Query: 84  RKFFSSQALGGHQNAHSRERKLAKAG 99
           RKF+SSQALGGHQNAH RER LAK G
Sbjct: 75  RKFYSSQALGGHQNAHKRERTLAKRG 100

[Close]
BLAST of Carg25054 vs. TAIR10
Match: AT5G25160.1 (zinc finger protein 3)

HSP 1 Score: 71.2 bits (173), Expect = 7.1e-13
Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 41 NDLEELNLIDIFGHAC-----KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLA 99
          N   ELNLID              + E ++FSCNYCQR F+SSQALGGHQNAH RER LA
Sbjct: 31 NSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLA 90

[Close]
BLAST of Carg25054 vs. TAIR10
Match: AT1G24625.1 (zinc finger protein 7)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 14 DSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEAAE--PRVFSCNYC 73
          D+  ET  S   ++     L+   +N   L +L L D F    K    E  PRVFSCNYC
Sbjct: 6  DASRETPASRGGEASSNQDLSKPESNHVSL-DLKLNDTFNDDTKSTKCEANPRVFSCNYC 65

Query: 74 QRKFFSSQALGGHQNAHSRERKLAK 97
          +RKF+SSQALGGHQNAH RER +AK
Sbjct: 66 RRKFYSSQALGGHQNAHKRERTMAK 89

[Close]
BLAST of Carg25054 vs. TAIR10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 42/97 (43.30%), Postives = 52/97 (53.61%), Query Frame = 0 

Query: 44  EELNLIDIFGHAC------KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKA 103
           +ELNL+D               + E ++FSCNYCQR F+SSQALGGHQNAH RER LAK 
Sbjct: 76  QELNLLDCLETGVVTPSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR 135

Query: 104 G---------------FEDPFIGCYRS-SFGVQTNSM 119
           G                  PF G Y + + G+Q +SM
Sbjct: 136 GQRMASAAAFGHPYGFAPVPFHGQYSNRTLGIQAHSM 172

[Close]
BLAST of Carg25054 vs. TAIR10
Match: AT1G66140.1 (zinc finger protein 4)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-12
Identity = 45/92 (48.91%), Postives = 49/92 (53.26%), Query Frame = 0 

Query: 64  RVFSCNYCQRKFFSSQALGGHQNAHSRERKLAK----AGFEDPFIGCYRSSFGVQTNSMV 123
           RVFSCNYCQRKF+SSQALGGHQNAH RER LAK     G    F G   SS      +  
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAA 142

Query: 124 LRKFYRKHGRGELVRGSFRSWRGGWKASAVDV 152
                  HG G     SFR+      +SA DV
Sbjct: 143 ALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDV 174

[Close]
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q42485|ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 45/86 (52.33%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 24  KDKSHQPFTLNLS--PNNDNDLEELNLIDIF---------GHACKEEAAEPRVFSCNYCQ 83
           K + HQ   L L+          ELNLID F               + A+PRVFSCNYCQ
Sbjct: 15  KKQGHQDLELGLTLLSRGTATSSELNLIDSFKTSXXXXXXXXXXXXQLADPRVFSCNYCQ 74

Query: 84  RKFFSSQALGGHQNAHSRERKLAKAG 99
           RKF+SSQALGGHQNAH RER LAK G
Sbjct: 75  RKFYSSQALGGHQNAHKRERTLAKRG 100

[Close]
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39262|ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 41 NDLEELNLIDIFGHAC-----KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLA 99
          N   ELNLID              + E ++FSCNYCQR F+SSQALGGHQNAH RER LA
Sbjct: 31 NSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLA 90

[Close]
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39266|ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-11
Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 14 DSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEAAE--PRVFSCNYC 73
          D+  ET  S   ++     L+   +N   L +L L D F    K    E  PRVFSCNYC
Sbjct: 6  DASRETPASRGGEASSNQDLSKPESNHVSL-DLKLNDTFNDDTKSTKCEANPRVFSCNYC 65

Query: 74 QRKFFSSQALGGHQNAHSRERKLAK 97
          +RKF+SSQALGGHQNAH RER +AK
Sbjct: 66 RRKFYSSQALGGHQNAHKRERTMAK 89

[Close]
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39261|ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 62  EPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFE 101
           +PRVFSCNYCQRKF+SSQALGGHQNAH  ER LAK   E
Sbjct: 48  QPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRE 86

[Close]
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39263|ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11
Identity = 45/92 (48.91%), Postives = 49/92 (53.26%), Query Frame = 0 

Query: 64  RVFSCNYCQRKFFSSQALGGHQNAHSRERKLAK----AGFEDPFIGCYRSSFGVQTNSMV 123
           RVFSCNYCQRKF+SSQALGGHQNAH RER LAK     G    F G   SS      +  
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAA 142

Query: 124 LRKFYRKHGRGELVRGSFRSWRGGWKASAVDV 152
                  HG G     SFR+      +SA DV
Sbjct: 143 ALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDV 174

[Close]
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A2K3N626|A0A2K3N626_TRIPR (Zinc finger protein 3-like OS=Trifolium pratense OX=57577 GN=L195_g021697 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 0 

Query: 18  ETKQSPKDKSHQPFTLNLSPN---NDNDLEELNLIDIFGHACKEEAAE---------PRV 77
           +TK   +        L+LS     +D   +ELNL++ F     E ++E         PRV
Sbjct: 2   DTKHKNESSPQLVLDLSLSSKDSCDDESKQELNLLNCFHANLSESSSESSLDPNELDPRV 61

Query: 78  FSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPF------IGCYRSSFGVQTNSMV 137
           FSCNYCQRKF+SSQALGGHQNAH RER LA+ G+           G    S G+Q +SM+
Sbjct: 62  FSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMPSSMSSYGLCNKSLGIQVHSMI 121

Query: 138 LRKFYRKHGRGELVRGSFRSWRGGWKASAVD 151
            +  Y+K   G    G     + GWK    D
Sbjct: 122 NKPSYQKPFFGFCSNG-----QNGWKRQNFD 147

[Close]
BLAST of Carg25054 vs. TrEMBL
Match: tr|W1PL03|W1PL03_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00150p00049910 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 48/84 (57.14%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 42  DLEELNLIDIFGHACKE---EAA---EPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLA 101
           DL ELNLID           EA    EPRVF CNYCQRKF+SSQALGGHQNAH RER LA
Sbjct: 2   DLTELNLIDCLDSITDSPELEATGDREPRVFPCNYCQRKFYSSQALGGHQNAHKRERTLA 61

Query: 102 KAGFEDPFIGCYRSSFGVQTNSMV 120
           K G   P  G      G+Q +SM+
Sbjct: 62  KRGHRGPVFGHTAPVLGIQAHSMI 85

[Close]
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A2R6QMR5|A0A2R6QMR5_ACTCH (Zinc finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15471 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 57/136 (41.91%), Postives = 67/136 (49.26%), Query Frame = 0 

Query: 45  ELNLIDIFGHAC--------KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAK 104
           ELNLID   +          +E  AEPRVFSCNYCQRKFFSSQALGGHQNAH RER LAK
Sbjct: 62  ELNLIDCLNNDSTQTSPEIPQESDAEPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAK 121

Query: 105 AGFED----------------------PFIGCYRSSFGVQTNSMVLRKFYRKHGRGELVR 151
            G +                       P  G Y  S G+Q +SM+ +  Y     G  +R
Sbjct: 122 RGLKIGSPRGHSXXXXXXXXXXXXXSLPLHGAYNRSLGIQVHSMIHKPSYIPSSSG--IR 181

[Close]
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A1S3VCV9|A0A1S3VCV9_VIGRR (zinc finger protein 3-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106773734 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 62/164 (37.80%), Postives = 88/164 (53.66%), Query Frame = 0 

Query: 15  SQTETKQSPKDKSHQPFTLNLSPNN-----DNDLEELNLIDIFGHACKEEAAE------- 74
           ++++ ++ P D S+    L+LS +N     D    ELNL++ F     E ++E       
Sbjct: 39  TESDDQKHPND-SNPGVLLDLSLSNKDSGDDESKPELNLLNCFHTNFSENSSESSQGNEL 98

Query: 75  -PRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFED------------PFI---GC 134
            PRVFSCNYCQRKF+SSQALGGHQNAH RER LA+ G++             PF+   G 
Sbjct: 99  DPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTMPFLPSHGL 158

Query: 135 YRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVD 151
           Y  S G+Q +SM+ +  Y+       + G  RS   GW+   +D
Sbjct: 159 YNKSLGIQVHSMINKPSYQAP-----IFGLCRS--NGWQRQPLD 194

[Close]
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A2I0VMC4|A0A2I0VMC4_9ASPA (Zinc finger protein 3 OS=Dendrobium catenatum OX=906689 GN=ZFP3 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14
Identity = 49/100 (49.00%), Postives = 60/100 (60.00%), Query Frame = 0 

Query: 59  EAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDP------FIGCYRSSFG 118
           E AE RVFSCNYC+RKF+SSQALGGHQNAH RER+LAK G   P      F G      G
Sbjct: 40  ETAEQRVFSCNYCRRKFYSSQALGGHQNAHKRERQLAKRGRGGPVDDNRHFAGLPLRPLG 99

Query: 119 VQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVDVG 153
           +QT+SMV + ++       +V G   + R GW  + V  G
Sbjct: 100 IQTHSMVHKAYFGSPSAPAMVAG-MMAGRQGWFRTPVGTG 138

The following BLAST results are available for this feature:
BLAST of Carg25054 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023548450.14.8e-1535.74zinc finger protein 3-like [Cucurbita pepo subsp. pepo][more]
ERN08449.11.4e-1457.14hypothetical protein AMTR_s00150p00049910 [Amborella trichopoda][more]
PNX98449.11.4e-1438.41zinc finger protein 3-like [Trifolium pratense][more]
PSS11198.11.4e-1441.91Zinc finger protein [Actinidia chinensis var. chinensis][more]
XP_022154830.11.8e-1433.62zinc finger protein 1-like [Momordica charantia][more]
BLAST of Carg25054 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80730.17.6e-1552.33zinc-finger protein 1[more]
AT5G25160.17.1e-1357.14zinc finger protein 3[more]
AT1G24625.11.2e-1249.41zinc finger protein 7[more]
AT5G10970.12.1e-1243.30C2H2 and C2HC zinc fingers superfamily protein[more]
AT1G66140.13.5e-1248.91zinc finger protein 4[more]
BLAST of Carg25054 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q42485|ZFP1_ARATH1.4e-1352.33Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1[more]
sp|Q39262|ZFP3_ARATH1.3e-1157.14Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1[more]
sp|Q39266|ZFP7_ARATH2.2e-1149.41Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1[more]
sp|Q39261|ZFP2_ARATH6.3e-1179.49Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1[more]
sp|Q39263|ZFP4_ARATH6.3e-1148.91Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2[more]
BLAST of Carg25054 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K3N626|A0A2K3N626_TRIPR9.2e-1538.41Zinc finger protein 3-like OS=Trifolium pratense OX=57577 GN=L195_g021697 PE=4 S... [more]
tr|W1PL03|W1PL03_AMBTC9.2e-1557.14Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00150p00049910... [more]
tr|A0A2R6QMR5|A0A2R6QMR5_ACTCH9.2e-1541.91Zinc finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac... [more]
tr|A0A1S3VCV9|A0A1S3VCV9_VIGRR1.6e-1437.80zinc finger protein 3-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106773734... [more]
tr|A0A2I0VMC4|A0A2I0VMC4_9ASPA2.0e-1449.00Zinc finger protein 3 OS=Dendrobium catenatum OX=906689 GN=ZFP3 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2_type
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25054-RACarg25054-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.160.60coord: 50..101
e-value: 2.2E-5
score: 26.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..38
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 12..99
NoneNo IPR availablePANTHERPTHR26374:SF258ZINC FINGER PROTEIN 1coord: 12..99
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 68..88
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 66..93
score: 11.759
IPR036236Zinc finger C2H2 superfamilySUPERFAMILYSSF57667beta-beta-alpha zinc fingerscoord: 63..93

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25054CmoCh01G010400Cucurbita moschata (Rifu)carcmoB1361
Carg25054Cp4.1LG02g08990Cucurbita pepo (Zucchini)carcpeB1409
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg25054Cucumber (Gy14) v2carcgybB0998
Carg25054Cucumber (Gy14) v1carcgyB1128
Carg25054Cucurbita maxima (Rimu)carcmaB1404
Carg25054Wild cucumber (PI 183967)carcpiB1050
Carg25054Cucumber (Chinese Long) v2carcuB1026
Carg25054Cucumber (Chinese Long) v3carcucB1056
Carg25054Bottle gourd (USVL1VR-Ls)carlsiB925
Carg25054Melon (DHL92) v3.5.1carmeB0984
Carg25054Melon (DHL92) v3.6.1carmedB0994
Carg25054Watermelon (Charleston Gray)carwcgB0987
Carg25054Watermelon (97103) v1carwmB1012