Carg25020 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25020
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-H2 finger protein
Location	Cucurbita_argyrosperma_scaffold_176 : 145436 .. 151297 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTTCTTCTTTCTCCTTACATCTCTGTTCTTTCAGAAATTCTCTCTCGTCTGTTCGTTCACCCCTGTCTTTTGATTTAAGGAACACCTCTTCTTTTTCCCCTTTTCCACTTCGATTCTTTTACGAATTCCCCTCCTTCACTAGAATCTGGATTTGTATTTTTGTTCAACGATTTGTTTGGTTTCTTTTGTTGTTGTTTTTTTTTTTTTTTTTCTTTTTGTTCTTCGATTGGTGGCTTAGGGGTTTTAGATTTTTGGTTCTTACATGGGGTTGGGTAACGATGACGAAGCGGTGGCGGAAGATGGCGATTATGGCGACGGAGGATGTGGTGCCGGTTGTGGAAAGTCCTTTGGTTCTGTCCCGTGTTCGATCTGTCTCGATGTTGTTGACGATTCTGGAGATAGATCTTGGGCTAAGCTTCAATGTGGCCATCAATTTCATCTTGGTGAGTTTTTTTTTAACGGATTCCCCTCTTTTTTGTTTCCCCCTTGTTGAAACTTGTGTATTTTGGGCGTAATAATGGATTTAGGGTCCTTGTGATTTTAGATCTGTTTCTTCTTTTCTTTTGCTGAAATTACAACTCTTAAGTTTGTGCTTTTGTTGTTTCAATTGTTTTGGTCAGAAAAGGAAATGGTTTAGATTAGATACATATTTTCTTTTTTGGTTGATTCTTTTATTGTACTTCTTTTGTTTTCTTAGATTGCATTGGTTCGGCATTCAACATTAAAGGGGCAATGCAATGCCCCAATTGTCGGAAGATTGAAAAAGGTCAATGGCTTTATGCTAATGGCTGTAGGTCGTTTCCAGATTTTAGTATGGATGATTGGACCCACGAAGAGGATCTCTATGATCTAAGCTACTCAGAAATGGTAAGCGATTGTCTTTCATTGATTGACTCATGTACGTTACGTTGTGGGTATGCATGGAAATTTTCAATCATCAGGGCACCATGTGAACAAGAACAAGAAGTTCAATTAACCAGGAACTGATAATTGTGATGCAAACTTTTCCTTTCACTTTGGGGAATGTTCTTCAACTGTTCTAGATTTTAATCTGCATAGTCAAAAGCGGTGTCCCGTAGGGAGATGGTTGATACTTGGAATCATTTGAAGTCCTCGCTGTTTAAAAGGCGAACGAACTAGTTCCCTCTCAATAATTATTACCAAAAATTGTTGCTCCTTTTTTAATCACTGATTATTTTTCGTTTATTTTTAATTACTTCTGTTGTAATTTTTATCTTTTATGGTCTAACATGTGTTAGGTTGACCGATCTTTTTGTGGCCTTCTTAGGTAGTTCTATATCTTTGGTGACAGCAAGTTTTATCATTTAAAATAGTTCATTGTGTGAATTGATTTGAAATGTGCTCGTGGCTGATGCTCAGAAACGACATGCCTAAATTCCATGTGCATTCACATTTAAATACTTGGGTGTTGTAAATCATGTTTATAGATTTATCTTGCATGAGTTCATATTCTAAATGGGTCAATGACCTGCTTGTTTACTCATTGTATTAAGTTCTTTCCACCAAATTTTAGCTGGAATTTGATTTGTTGCAGGCCTTTGGAGTTCAATGGTGTCCTTTTGGCAACTTAGCTCGACTTCCTCCTTCATTTGAGTAAGTTTTGATTTGTTCATTAATGATATAAGGATAATTGACGCTCCGGTTTTTATGTTGATGTCTTCTTTCTTGGTTCTGTTCCTGTTCTCTAAATTGGTTATATATGATGCGTTGATACTTATTAGTTGGTAACTGATTCCTTTCTAAAACTTTACCGCTTGGATTTGGAAACTAAAGGCATTTTTTTGCAGTGTAAGGTGGGAGAGAATATGTTGTTTCCTTCTAAATGCTGAGATATCAACTTGAGTTTTGAAAACTTAAATACATCCTTTTCAATAAAAGATTCAAGGAAAGTAACAAATATCATCGAGAAATCTTAGAGCTTGAATCGTCACATGATTTTAGTTAATAGAATTAAATGTAAGTATGTGGATGGACACTGAATTGCTATTTTTCTGCCTTTGATGTGGGTGATGTCTTTATTGTTCCCCGATAAATTCTGTTCAGAACTACCATCTCAGCGTTACATTTCTTCTTCTTCTAATATAATTTCATTGATGAGAATGAAGGAAAAATTTCCAGGGAAATACAGAACAGGCATACCAATTGGAAGAAAAGATAGATGGAGAGTACCCACTAAATTCTCTAGTTGGAGGGCTCAATAAGGAAGTACCCCAAACAATAGCATCCCATGTTTCCATTCGATCTCAAAATCTCTTCATCAAAATGTCCCAAAATGTGGCTCTAATGGCATTTGATTGTAAGACATTGGCTTACTTTTTTAACAAGGAGCAATGGAACCAAGAGTGATTTCTATGGTGCACTGAGTTGGGGAGAGAGATTCATATTGAAGGTTTGAAGCAGTTTCCATTGAACATGGAGCAAGGGAAACTTCAATAAAGCTGATCTCCTCTCTTACAAATTATAATCGAGTATGCTTCGGTTGGAGGGAAACGATTTGTACTTTGGACTTAATCATTAGTGTCAAGACCTCTTCCTTTAAGAATAATAATCCATCCAAATACCTTTCCTTCTTCATGTCTTTCTTTCCAGTTGAAGCTTGGAAGATAACTTTAGAGAGATCACCAGCACCACGTAAAGCCTACAAAGAGAGAGCTTGCCATGAAGGCCCTCAAACAAATGTGTTGATTTGGAAATTTTCATTTTGATTAATTGGGTATAATTAACAAGGTTGCCTGATCTACCTTCAATTTGAAGAAAGGAAGGATTTCTTTTTTATTTTTTTTGTGTTGCCTTTCTTTTATTTGTTCAATCTCTCTTTGTTTATCCATAGTTGATATTGGGGATCTTCATTGTGGCTGGGGTGCCATAGATGTTCTTATAGAAATACAAAAGGTATTACCCATCTCATACAATATTGTATGAACCTATGAATAGGCTTTGCAAGAACAATAAAAAGTTGCACAATGTATGGTAGAGTTTCTTGGTCTAATCATTTGAGGATGACTCCCCCAGAAATCTTGCAAGTGACATGTGTTCGGGTAAAAAGTACAATTTTAGCCTCCTTGCACTCTTTAGATTTCAGAAGTTCCGTGGCTGATCAAGATGAGAATGAATTCAGGAGTCTAAGACGGACATTCTGGAGCTTCTGCTCTTCTTCAGCCATTCTTATAAAGAGGGGCCTAGAAAGGGTGGCCTTTGCAACACCAACCAAGAAGGGAGAATGAATGCCTCGAAAATCAACTGTTTCCCTGAGTCATAAAGCTGCTTCTTGGATTGTTGTAGAATAAGTAGGAAAAATGACTTTACTTGAAAGAACGTTACTGGAACGAGAGGGAATCACTTGCCGGTCTTCCTCCTTTAGTAACTCTTTATTGGTAGGTGCACTTATGCCATTTCTAATGGCCTATTTGGTTGTCTTGCTATGCACCACTTGAAAATTTTCATTGAATAATGAAATTTTCTTTGCCTACTTTACAACGCGTTAGGGAAGACGATCCTTTCCCTTTCAATAGTGGTCTCGTTTTCATCAACAACGACAGCTGCTGAGAATGATGAGATTCATATGAATAATTTTATAAATTTTCAGATTCTATATATGTATGGGCTGTTCTATGCTGCTAGCCAAACAGAAATTTAGACAGATCTTTGTTGCAATTATTGTGTAAATACAGAATCTTCCATCCTGATGTCTTGAATCGTTCTCATGTTTAACTTTTTTCAGGGATGGCGACTTTTCGTCAACTGCTTGTAAGATTTCTCTCCCCCACAGAAATTGTTGATCCATTTTTTAGCTGCAGTTTGAGGAAGCAACCAAATTTGACCGGGTTGATAATGTTGTGATGCAGATCATGACCTTTTGGGACAACATGCAGTTTTCGCCGAACATACCGCAGTATCTTCTGCAACTCATCCCTGTCCATATATTGCTTACTTCGGACCTATTCATCCCTCTTCATCAAGTTCAAGTGCTTCTGAAGCTTCGAATTTCAGTGGTCACTGGAATGGCCCCCCATCAGTACCCAGTGAAGTACCATCTTCCTATGCATTTCCTGCAGTGGATCTTCATTATCAAAATTGGGAGCATCACTCACTGCCCTTTTCCACAACAAACAATCGTGTTGCTGGTGCTGATCAGCCGACGGTTGCATCCGTTGCCCAAAGATCTACTAGAGTCGGTACTGAACTACCAAGATCCGGAATGCATCCTTTTCTTGTTGGTCATAGGTATGTCTTAACATAATTGGATATAACCAGTTGAACTTCTTAGTCTTGACGTTACAGAAATACAATGCAGCATTGCCTATGTAACAGCCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGAACTTTCCTTTTCGGACGTTTCCTCAAGGTTCTTAAAACGCGTCTGCTAGGGCGAGGTTTCCACACCCTTATAAAGAATACTTCGTTCTCCTTCCCAACCAATGTGGGATCTCACAATCTACCCTCCTTCGGGGCCTAGCGTTCTTGCTAGCACACAGTCTTGTGTACACCTCCCTTCGGGTTTCAGTCTCCTCGCTGACATATTGCCCGGTGTCTGGCTCTGATACCATTTGTAGCAGCCTAAGTCCACTGTTACCGGCTGTCTTGTTGTGGAGGCAGTTTCCTTACCTCCGACACTGGTTTATGGCCGTGTGTACCACTTAATTGTTTGCCTGTTGTAGAAGGACCACATAATACAGCCTTTTACTTATATTTGGTTATCTCAAGCATCATGAGTAACAGCCCTTTTCTCTTTTCTCAAACAGAGAGAAGCCCTTTAATTTGAACAATATTTTCTTTTGATTCACAGTTCCAGTGCAAGGGTTGGGAGTTCGGTTGCTTCCTCAATGATTCCTCCATATCCTGGCAGCAATGCACGTGCTCGTGACCGAGTTCAAGCTCTCCAAGCATATTATCAACAACCTAGCACTACAGGAAGCATTCGCGCACCTGCAATTTCTGGTGCCAGAAGATCAAGTAGTAACAGAGGGCTGTCGCAAGCACCCATGGCCTCATCATCTGATCAACCCAATGGCTTCTATTTCTACTCATCCGCATCATCGGGTCGTAATTTCCAACTGGAAAACACTGTGCCAAATCGCTTTCACCCATGGGAAAGAGATCACTTGCCTTCTTTCGGTTTGAACCAGATGGAAAGAGATCCAGGTTGGGGAGAGATTCATCAGGGTGCCGCCAGTGTTTCTGATCCAAGCATCAGGTCCAGCAGCTTTCGTCAAAGGCATGGTCCCGAGAGGGCATCGTCGCAAAATTGGTCATAGACCAACCATCATTTACTTACCGATTCCCGGTGAGGCTAAAACTATCACTATGATGACTTGAAACTGAAATTTATGTAATGATTGGGATGATATGTAATGGCCGAGTCTTTGATGTGCCGCTAGACTCTATATGCTGTGAGAGCAGCCGATAAGAAAAAAAACAAGCTCGCTTCGAGTTACGGATATGGTTAGTGTGGTGATGGACTTGGCTTCCTTGAGATTGTCTGCCCTGGAGGTTATAGAATAACGTTATGAATCGGATGGGAAAACTAAGATTTGTAGGTAACAGCCTTTTCCTGTTTGTGTTCGTGTTCGTGTCCCATCCAATTCATAAGGATGTTGGAGTAACTTGGGGTAGCTCGGGAGGGCCAGATTAGTGAATTTGGTAAATTGTATTCTTGCAGTGATAGTTGAAAATATTCCGTGTTTATTTGTAAACAATGAAACGTGGTGGTTTCAGTAATGTATGAGCAGAACAGGACAGGTCAGCTTTTGGTTTTTGACTTCATCAGACTTCATGGAGAGTGTTCATAATATATATATAAATATATATA

mRNA sequence

CATCTTCTTCTTTCTCCTTACATCTCTGTTCTTTCAGAAATTCTCTCTCGTCTGTTCGTTCACCCCTGTCTTTTGATTTAAGGAACACCTCTTCTTTTTCCCCTTTTCCACTTCGATTCTTTTACGAATTCCCCTCCTTCACTAGAATCTGGATTTGTATTTTTGTTCAACGATTTGTTTGGTTTCTTTTGTTGTTTTGTTCTTCGATTGGTGGCTTAGGGGTTTTAGATTTTTGGTTCTTACATGGGGTTGGGTAACGATGACGAAGCGGTGGCGGAAGATGGCGATTATGGCGACGGAGGATGTGGTGCCGGTTGTGGAAAGTCCTTTGGTTCTGTCCCGTGTTCGATCTGTCTCGATGTTGTTGACGATTCTGGAGATAGATCTTGGGCTAAGCTTCAATGTGGCCATCAATTTCATCTTGATTGCATTGGTTCGGCATTCAACATTAAAGGGGCAATGCAATGCCCCAATTGTCGGAAGATTGAAAAAGGTCAATGGCTTTATGCTAATGGCTGTAGGTCGTTTCCAGATTTTAGTATGGATGATTGGACCCACGAAGAGGATCTCTATGATCTAAGCTACTCAGAAATGGCCTTTGGAGTTCAATGGTGTCCTTTTGGCAACTTAGCTCGACTTCCTCCTTCATTTGAGGATGGCGACTTTTCGTCAACTGCTTATCATGACCTTTTGGGACAACATGCATATCTTCTGCAACTCATCCCTGTCCATATATTGCTTACTTCGGACCTATTCATCCCTCTTCATCAAGTTCAAGTGCTTCTGAAGCTTCGAATTTCAGTGGTCACTGGAATGGCCCCCCATCAGTACCCAGTGAAGTACCATCTTCCTATGCATTTCCTGCAGTGGATCTTCATTATCAAAATTGGGAGCATCACTCACTGCCCTTTTCCACAACAAACAATCGTGTTGCTGGTGCTGATCAGCCGACGGTTGCATCCGTTGCCCAAAGATCTACTAGAGTCGGTACTGAACTACCAAGATCCGGAATGCATCCTTTTCTTTTCCAGTGCAAGGGTTGGGAGTTCGGTTGCTTCCTCAATGATTCCTCCATATCCTGGCAGCAATGCACGTGCTCGTGACCGAGTTCAAGCTCTCCAAGCATATTATCAACAACCTAGCACTACAGGAAGCATTCGCGCACCTGCAATTTCTGGTGCCAGAAGATCAAGTAGTAACAGAGGGCTGTCGCAAGCACCCATGGCCTCATCATCTGATCAACCCAATGGCTTCTATTTCTACTCATCCGCATCATCGGGTCGTAATTTCCAACTGGAAAACACTGTGCCAAATCGCTTTCACCCATGGGAAAGAGATCACTTGCCTTCTTTCGGTTTGAACCAGATGGAAAGAGATCCAGGTTGGGGAGAGATTCATCAGGGTGCCGCCAGTGTTTCTGATCCAAGCATCAGGTCCAGCAGCTTTCGTCAAAGGCATGGTCCCGAGAGGGCATCGTCGCAAAATTGGTCATAGACCAACCATCATTTACTTACCGATTCCCGGTGAGGCTAAAACTATCACTATGATGACTTGAAACTGAAATTTATGTAATGATTGGGATGATATGTAATGGCCGAGTCTTTGATGTGCCGCTAGACTCTATATGCTGTGAGAGCAGCCGATAAGAAAAAAAACAAGCTCGCTTCGAGTTACGGATATGGTTAGTGTGGTGATGGACTTGGCTTCCTTGAGATTGTCTGCCCTGGAGGTTATAGAATAACGTTATGAATCGGATGGGAAAACTAAGATTTGTAGGTAACAGCCTTTTCCTGTTTGTGTTCGTGTTCGTGTCCCATCCAATTCATAAGGATGTTGGAGTAACTTGGGGTAGCTCGGGAGGGCCAGATTAGTGAATTTGGTAAATTGTATTCTTGCAGTGATAGTTGAAAATATTCCGTGTTTATTTGTAAACAATGAAACGTGGTGGTTTCAGTAATGTATGAGCAGAACAGGACAGGTCAGCTTTTGGTTTTTGACTTCATCAGACTTCATGGAGAGTGTTCATAATATATATATAAATATATATA

Coding sequence (CDS)

ATGGGGTTGGGTAACGATGACGAAGCGGTGGCGGAAGATGGCGATTATGGCGACGGAGGATGTGGTGCCGGTTGTGGAAAGTCCTTTGGTTCTGTCCCGTGTTCGATCTGTCTCGATGTTGTTGACGATTCTGGAGATAGATCTTGGGCTAAGCTTCAATGTGGCCATCAATTTCATCTTGATTGCATTGGTTCGGCATTCAACATTAAAGGGGCAATGCAATGCCCCAATTGTCGGAAGATTGAAAAAGGTCAATGGCTTTATGCTAATGGCTGTAGGTCGTTTCCAGATTTTAGTATGGATGATTGGACCCACGAAGAGGATCTCTATGATCTAAGCTACTCAGAAATGGCCTTTGGAGTTCAATGGTGTCCTTTTGGCAACTTAGCTCGACTTCCTCCTTCATTTGAGGATGGCGACTTTTCGTCAACTGCTTATCATGACCTTTTGGGACAACATGCATATCTTCTGCAACTCATCCCTGTCCATATATTGCTTACTTCGGACCTATTCATCCCTCTTCATCAAGTTCAAGTGCTTCTGAAGCTTCGAATTTCAGTGGTCACTGGAATGGCCCCCCATCAGTACCCAGTGAAGTACCATCTTCCTATGCATTTCCTGCAGTGGATCTTCATTATCAAAATTGGGAGCATCACTCACTGCCCTTTTCCACAACAAACAATCGTGTTGCTGGTGCTGATCAGCCGACGGTTGCATCCGTTGCCCAAAGATCTACTAGAGTCGGTACTGAACTACCAAGATCCGGAATGCATCCTTTTCTTTTCCAGTGCAAGGGTTGGGAGTTCGGTTGCTTCCTCAATGATTCCTCCATATCCTGGCAGCAATGCACGTGCTCGTGACCGAGTTCAAGCTCTCCAAGCATATTATCAACAACCTAGCACTACAGGAAGCATTCGCGCACCTGCAATTTCTGGTGCCAGAAGATCAAGTAGTAACAGAGGGCTGTCGCAAGCACCCATGGCCTCATCATCTGATCAACCCAATGGCTTCTATTTCTACTCATCCGCATCATCGGGTCGTAATTTCCAACTGGAAAACACTGTGCCAAATCGCTTTCACCCATGGGAAAGAGATCACTTGCCTTCTTTCGGTTTGAACCAGATGGAAAGAGATCCAGGTTGGGGAGAGATTCATCAGGGTGCCGCCAGTGTTTCTGATCCAAGCATCAGGTCCAGCAGCTTTCGTCAAAGGCATGGTCCCGAGAGGGCATCGTCGCAAAATTGGTCATAG

Protein sequence

MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFGVQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPVHILLTSDLFIPLHQVQVLLKLRISVVTGMAPHQYPVKYHLPMHFLQWIFIIKIGSITHCPFPQQTIVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGSNARARDRVQALQAYYQQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYSSASSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSFRQRHGPERASSQNWS

Homology

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BLAST of Carg25020 vs. NCBI nr
Match: XP_022969703.1 (E3 ubiquitin-protein ligase RFI2-like [Cucurbita maxima])

HSP 1 Score: 625.9 bits (1613), Expect = 9.6e-176
Identity = 328/433 (75.75%), Postives = 341/433 (78.75%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60
           MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL
Sbjct: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60

Query: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120
           DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG
Sbjct: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120

Query: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLHQ 180
           VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHA   +   V    H       F P+H 
Sbjct: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAVFAEHTAVSSATHPCPYIAYFGPIHP 180

Query: 181 VQVLLKLRISVVTG-------MAPHQYPVKYHLP---MHFLQWIFIIKIGSITH---CPF 240
                                  P + P  Y  P   +H+  W       S TH      
Sbjct: 181 SSXXXXXXXXXXXXXHWNGPPSVPSEVPSSYAFPAVDLHYQNWEHHSLPFSTTHNRVAGA 240

Query: 241 PQQTIVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGSNA 300
            Q T+  +    R    +  +L  S ++   P  +   SSARVGSSVASSMIPPYPGSNA
Sbjct: 241 DQPTVASVA--QRSATRVSTELPRSGMH---PFLVGHSSSARVGSSVASSMIPPYPGSNA 300

Query: 301 RARDRVQALQAYYQQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYSSA 360
           RARDRVQALQAYYQQPSTTGSIRAPAISGARRSSS+RGLSQAPMASSSDQPNGFYFYSSA
Sbjct: 301 RARDRVQALQAYYQQPSTTGSIRAPAISGARRSSSHRGLSQAPMASSSDQPNGFYFYSSA 360

Query: 361 SSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSFRQ 417
           SSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSFRQ
Sbjct: 361 SSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSFRQ 420

[Close]

BLAST of Carg25020 vs. NCBI nr
Match: XP_022928757.1 (E3 ubiquitin-protein ligase RFI2-like [Cucurbita moschata])

HSP 1 Score: 618.6 bits (1594), Expect = 1.5e-173
Identity = 324/435 (74.48%), Postives = 335/435 (77.01%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60
           MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL
Sbjct: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60

Query: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120
           DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG
Sbjct: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120

Query: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLHQ 180
           VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHA   +   V    H       F P+H 
Sbjct: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAVFAEHTAVSSATHPCPYIAYFGPIHP 180

Query: 181 VQVLLKLRISVVTG-------MAPHQYPVKYHLP---MHFLQW-----IFIIKIGSITHC 240
                                  P + P  Y  P   +H+  W      F      +   
Sbjct: 181 SSXXXXXXXXXXXXXHWNGPPSVPSEVPSSYAFPAVDLHYQNWEHHSLPFSTTNNRVAGA 240

Query: 241 PFPQQTIVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGS 300
             P    V     +R    LP+  +        P  +   SSARVGSSVASSMIPPYPGS
Sbjct: 241 DQPTVASVAQRSATRVGTELPRSGMH-------PFLVGHSSSARVGSSVASSMIPPYPGS 300

Query: 301 NARARDRVQALQAYYQQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYS 360
           NARARDRVQALQAYYQQPSTTGSIRAPAISGARRSSS+RGLSQAPMASSSDQPNGFYFYS
Sbjct: 301 NARARDRVQALQAYYQQPSTTGSIRAPAISGARRSSSHRGLSQAPMASSSDQPNGFYFYS 360

Query: 361 SASSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSF 417
           SASSG NFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPS RSSSF
Sbjct: 361 SASSGHNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSTRSSSF 420

[Close]

BLAST of Carg25020 vs. NCBI nr
Match: XP_023530252.1 (E3 ubiquitin-protein ligase RFI2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 617.1 bits (1590), Expect = 4.4e-173
Identity = 323/435 (74.25%), Postives = 335/435 (77.01%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60
           MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL
Sbjct: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60

Query: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120
           DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG
Sbjct: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120

Query: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLHQ 180
           VQWCPFGNLARLPPSFEDGD SSTAYHDLLGQHA   +   V    H       F P+H 
Sbjct: 121 VQWCPFGNLARLPPSFEDGDLSSTAYHDLLGQHAVFAEHTAVSSATHPCPYIAYFGPIHP 180

Query: 181 VQVLLKLRISVVTG-------MAPHQYPVKYHLP---MHFLQW-----IFIIKIGSITHC 240
                                  P + P  Y  P   +H+  W      F      +   
Sbjct: 181 SSXXXXXXXXXXXXXHWNGPPSVPSEVPSSYAFPAVDLHYQNWEHHSLPFSTTNNRVAGA 240

Query: 241 PFPQQTIVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGS 300
             P    V     +R    LP+  +        P  +   SSARVGSSVASSMIPPYPGS
Sbjct: 241 DQPTVASVAQRSATRVGTELPRSGMH-------PFLVGHSSSARVGSSVASSMIPPYPGS 300

Query: 301 NARARDRVQALQAYYQQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYS 360
           NARARDRVQALQAYYQQPSTTGSIR PAISGARRSS++RGLSQAPMASSSDQPNGFYFYS
Sbjct: 301 NARARDRVQALQAYYQQPSTTGSIRPPAISGARRSSNHRGLSQAPMASSSDQPNGFYFYS 360

Query: 361 SASSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSF 417
           SASSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSF
Sbjct: 361 SASSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSF 420

[Close]

BLAST of Carg25020 vs. NCBI nr
Match: XP_008450612.1 (PREDICTED: uncharacterized protein LOC103492151 [Cucumis melo])

HSP 1 Score: 567.4 bits (1461), Expect = 4.0e-158
Identity = 298/430 (69.30%), Postives = 327/430 (76.05%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60
           MGLGNDD+AVAEDGDYGDGGCGAG GKSFGSVPCSICLDVV DSGDRSWAKLQCGHQFHL
Sbjct: 1   MGLGNDDDAVAEDGDYGDGGCGAGGGKSFGSVPCSICLDVVADSGDRSWAKLQCGHQFHL 60

Query: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120
           DCIGSAFNIKGAMQCPNCRK+EKGQWLYANGCRSFPDF+MDDWTHEEDLYDLSYSEMAFG
Sbjct: 61  DCIGSAFNIKGAMQCPNCRKVEKGQWLYANGCRSFPDFNMDDWTHEEDLYDLSYSEMAFG 120

Query: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLHQ 180
           VQWCPFG+LARLP SFEDGDFSSTAYHDLLGQHA   +   V    H       F P+H 
Sbjct: 121 VQWCPFGSLARLPSSFEDGDFSSTAYHDLLGQHAIFAEHTAVSSATHPCPYIAYFGPIHP 180

Query: 181 VQVLLKLRISVVTG------MAPHQYPVKYHLP---MHFLQWIFIIKIGSITHCPFPQQT 240
                                 P + P  Y  P   +H+  W       S T+   P   
Sbjct: 181 XXXXXXXXXXXXFSGHWNGPSVPSEIPSSYAFPAVDLHYQNWEHHSPPFSTTNNRVPGAD 240

Query: 241 IVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGSNARARD 300
              +  +++R        L    +   P  +   S ARVGSSVASSMIPPYPGSNARARD
Sbjct: 241 QPSVPSVAQRPATRVGSELPRSGSVLHPFLVGHSSGARVGSSVASSMIPPYPGSNARARD 300

Query: 301 RVQALQAYY-QQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYSSASSG 360
           RVQALQAYY QQPSTTG+IR PAISG RRSS++RG+SQAPMASSS+QP+GFYFYSSAS+G
Sbjct: 301 RVQALQAYYQQQPSTTGTIRTPAISGGRRSSNHRGISQAPMASSSEQPSGFYFYSSASAG 360

Query: 361 RNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSFRQRHG 417
           R+FQ ENT+PNRFH WER+HLPSFGL+Q+ERDPGWGEIHQG ASVSDP+IRSSSFRQRHG
Sbjct: 361 RSFQPENTMPNRFHAWEREHLPSFGLSQIERDPGWGEIHQG-ASVSDPNIRSSSFRQRHG 420

[Close]

BLAST of Carg25020 vs. NCBI nr
Match: XP_023515946.1 (E3 ubiquitin-protein ligase RFI2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 565.8 bits (1457), Expect = 1.2e-157
Identity = 304/435 (69.89%), Postives = 325/435 (74.71%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60
           MGLGNDD+AVAEDGDYGDGGCGAG GKSFGSV CSICLDVV DSGDRSWAKLQCGHQFHL
Sbjct: 1   MGLGNDDDAVAEDGDYGDGGCGAGGGKSFGSVACSICLDVVADSGDRSWAKLQCGHQFHL 60

Query: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120
           DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG
Sbjct: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120

Query: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLHQ 180
           VQWCPFG+L RLP SFEDGDFSSTAYHDLLGQHA   +   V    H       F P+  
Sbjct: 121 VQWCPFGSLTRLPSSFEDGDFSSTAYHDLLGQHAIFAEHTAVSSAAHPCPYIAYFGPIXX 180

Query: 181 VQVLLKLRISVVTG------MAPHQYPVKYHLP---MHFLQWIF----IIKIGSITHCPF 240
                                 P + P  Y  P   +H+  W         + +      
Sbjct: 181 XXXXXXXXXXXXXXXXWNGPSVPSEMPSSYAFPAVDLHYQNWEHHSPPFSTMNNRVGADQ 240

Query: 241 PQQTIVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGSNA 300
           P    +     +R    LP+    SV++   P  +   S ARVGSSVASSMIPPYPGSNA
Sbjct: 241 PSVASIAQRSATRVGSELPRS--GSVIH---PFLVGHSSGARVGSSVASSMIPPYPGSNA 300

Query: 301 RARDRVQALQAYY-QQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYSS 360
           RARDRVQALQAYY QQPSTTG+IR PAISGARRSSS+RG SQAPMASSS+QPNGFYFYSS
Sbjct: 301 RARDRVQALQAYYQQQPSTTGTIRTPAISGARRSSSHRGPSQAPMASSSEQPNGFYFYSS 360

Query: 361 ASSGRNFQLENTVPNRFHPWERDHLPSFGLNQMERDP-GWGEIHQGAASVSDPSIRSSSF 417
           AS GRNFQ EN +PNRFH WERDHLPSFGL+QMERDP GWGEIHQGAASVSDPSIRSS+F
Sbjct: 361 ASGGRNFQPENAIPNRFHAWERDHLPSFGLSQMERDPSGWGEIHQGAASVSDPSIRSSNF 420

[Close]

BLAST of Carg25020 vs. TAIR10
Match: AT3G05545.1 (RING/U-box superfamily protein)

HSP 1 Score: 270.0 bits (689), Expect = 2.4e-72
Identity = 190/469 (40.51%), Postives = 231/469 (49.25%), Query Frame = 0


Query: 1   MGLGND------------DEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRS 60
           MGLGN             DEA   DGD GDG         FGSV CSICL+ V  +GDR+
Sbjct: 1   MGLGNKGNKFNFGDNDLADEASGADGDEGDG---------FGSVACSICLETVVKNGDRA 60

Query: 61  WAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEED 120
           WA LQC HQFHLDCIGSAFN KG MQCPNCRK+EKGQWLYANGCRS+P+F+++DW HEED
Sbjct: 61  WANLQCDHQFHLDCIGSAFNAKGVMQCPNCRKVEKGQWLYANGCRSYPEFNVEDWVHEED 120

Query: 121 LYDL-SYSEMAFGVQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQ-LIPV--HI 180
           +YD+ +YSEM+FGV WCPFG+ ARL PSFEDG+FS ++YHDLLGQ  Y  +   P   H 
Sbjct: 121 IYDIGAYSEMSFGVHWCPFGSSARL-PSFEDGEFSPSSYHDLLGQQGYYTEPAAPTAGHP 180

Query: 181 LLTSDLFIPLHQVQVLL--KLRISVVTGMAPH---------QYPVKYHLPM--HFLQWIF 240
                 F P+H           +S  +  + H         + P  Y  P+  H+  W +
Sbjct: 181 CPYVTYFGPVHSPSSSSGGAAGVSDSSSFSSHWNTGSSVSGEVPTPYGFPVDPHYHGWDY 240

Query: 241 I--------------IKIGSITHCPFPQQTIVLL-VLISRRLHPLPKDLLESVLNYQDPE 300
                            +GS T                S  + P P         +    
Sbjct: 241 XXXXXXXXXXXXXXGAHVGSPTXXXXXXXXXXXXRANGSDMIRPRPPHFTRPFHGHS--- 300

Query: 301 CILFFSSARVGSSVAS-SMIPPYPGSNARARDRVQALQAYYQ-------QPSTTGSIRAP 360
                SS R GSSVAS    PP+PGSNAR RDR+QALQAYYQ       QP +    R P
Sbjct: 301 -----SSGRAGSSVASVPRTPPFPGSNARTRDRMQALQAYYQQSSAQSHQPDSPIVSRGP 360

Query: 361 AISGARRSSSNRGLSQAPMASSSDQPNGFYFYSSASSGRNFQLENTVPNRFHPWERD--- 413
                RR +          +SSSDQ  G  F                  RF+ WERD   
Sbjct: 361 VFPSGRRPARGIASGMGSTSSSSDQAGGSGFI-----------------RFNIWERDPYM 420

[Close]

BLAST of Carg25020 vs. TAIR10
Match: AT2G47700.1 (RING/U-box superfamily protein)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-46
Identity = 89/144 (61.81%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 19  GGCGAG------CGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHLDCIGSAFNIKGA 78
           GGC  G         S   V CSICL+ V D G RS AKLQCGHQFHLDCIGSAFN+KGA
Sbjct: 17  GGCDPGKRGNPEDSSSPVEVSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGA 76

Query: 79  MQCPNCRKIEKGQWLYANG-CRSFPDFSMDDWTHEEDLYDLSYSEMAFGVQWCPFGNLAR 138
           MQCPNCR +EKGQWLYANG  R FP+FSM+DW  EEDLY LSY EM + V WCPFG L++
Sbjct: 77  MQCPNCRNVEKGQWLYANGSTRPFPEFSMEDWIPEEDLYGLSYPEMQYRVHWCPFGELSQ 136

Query: 139 LPPSFEDGDFSSTAYH-DLLGQHA 155
              SFE+ + ++T YH +  G HA
Sbjct: 137 AAASFEELEPATTTYHTEFHGHHA 160

[Close]

BLAST of Carg25020 vs. TAIR10
Match: AT2G15260.1 (RING/U-box superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 34  CSICLDVVDDSGD--RSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANG 93
           CSIC   + +  D  R+   L+C H+FHLDCIGSA+N KG M+CPNCR IE G W +++G
Sbjct: 123 CSICRGALVNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCRNIEPGHWQFSDG 182

Query: 94  CRSFPDFSMDDWTHEEDLYDL-SYSEMAFGVQWCPFGNLARLPP 135
               P+  + +        D  S+S+M    + CPFG L +  P
Sbjct: 183 THFNPNGMIANNEXXXXXNDPGSFSQMIVKSEVCPFGCLGQRYP 226

[Close]

BLAST of Carg25020 vs. TAIR10
Match: AT4G13490.1 (RING/U-box superfamily protein)

HSP 1 Score: 86.3 bits (212), Expect = 5.0e-17
Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 29 FGSVPCSICLD-VVDDSGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWL 88
          F    C++CL+ + +D+ +R+  KL+C H+FHLDC+GS+FNIK  M+CP CR+IEKG+WL
Sbjct: 17 FDDDDCAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCRQIEKGKWL 76

Query: 89 YA 90
          +A
Sbjct: 77 FA 78

[Close]

BLAST of Carg25020 vs. Swiss-Prot
Match: sp|O82239|RFI2_ARATH (E3 ubiquitin-protein ligase RFI2 OS=Arabidopsis thaliana OX=3702 GN=RFI2 PE=1 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 4.1e-45
Identity = 89/144 (61.81%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 19  GGCGAG------CGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHLDCIGSAFNIKGA 78
           GGC  G         S   V CSICL+ V D G RS AKLQCGHQFHLDCIGSAFN+KGA
Sbjct: 17  GGCDPGKRGNPEDSSSPVEVSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGA 76

Query: 79  MQCPNCRKIEKGQWLYANG-CRSFPDFSMDDWTHEEDLYDLSYSEMAFGVQWCPFGNLAR 138
           MQCPNCR +EKGQWLYANG  R FP+FSM+DW  EEDLY LSY EM + V WCPFG L++
Sbjct: 77  MQCPNCRNVEKGQWLYANGSTRPFPEFSMEDWIPEEDLYGLSYPEMQYRVHWCPFGELSQ 136

Query: 139 LPPSFEDGDFSSTAYH-DLLGQHA 155
              SFE+ + ++T YH +  G HA
Sbjct: 137 AAASFEELEPATTTYHTEFHGHHA 160

[Close]

BLAST of Carg25020 vs. Swiss-Prot
Match: sp|Q9BWF2|TRAIP_HUMAN (E3 ubiquitin-protein ligase TRAIP OS=Homo sapiens OX=9606 GN=TRAIP PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.1e-04
Identity = 28/81 (34.57%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 34  CSICLDVVDDSGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCR 93
           C+IC D  D S  R  A + CGH FHL C+   F    +  CP CR I+ G+    N  +
Sbjct: 7   CTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR-IQVGKRTIIN--K 66

Query: 94  SFPDFSMDDWTHEEDLYDLSY 115
            F D + +    EE++ D  +
Sbjct: 67  LFFDLAQE----EENVLDAEF 78

[Close]

BLAST of Carg25020 vs. Swiss-Prot
Match: sp|Q8VIG6|TRAIP_MOUSE (E3 ubiquitin-protein ligase TRAIP OS=Mus musculus OX=10090 GN=Traip PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 2.1e-04
Identity = 28/81 (34.57%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 34  CSICLDVVDDSGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCR 93
           C+IC D  D S  R  A + CGH FHL C+   F    +  CP CR I+ G+    N  +
Sbjct: 7   CTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR-IQVGKKTIIN--K 66

Query: 94  SFPDFSMDDWTHEEDLYDLSY 115
            F D + +    EE++ D  +
Sbjct: 67  LFFDLAQE----EENVLDAEF 78

[Close]

BLAST of Carg25020 vs. TrEMBL
Match: tr|A0A1S3BNZ2|A0A1S3BNZ2_CUCME (uncharacterized protein LOC103492151 OS=Cucumis melo OX=3656 GN=LOC103492151 PE=4 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 2.7e-158
Identity = 298/430 (69.30%), Postives = 327/430 (76.05%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60
           MGLGNDD+AVAEDGDYGDGGCGAG GKSFGSVPCSICLDVV DSGDRSWAKLQCGHQFHL
Sbjct: 1   MGLGNDDDAVAEDGDYGDGGCGAGGGKSFGSVPCSICLDVVADSGDRSWAKLQCGHQFHL 60

Query: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120
           DCIGSAFNIKGAMQCPNCRK+EKGQWLYANGCRSFPDF+MDDWTHEEDLYDLSYSEMAFG
Sbjct: 61  DCIGSAFNIKGAMQCPNCRKVEKGQWLYANGCRSFPDFNMDDWTHEEDLYDLSYSEMAFG 120

Query: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLHQ 180
           VQWCPFG+LARLP SFEDGDFSSTAYHDLLGQHA   +   V    H       F P+H 
Sbjct: 121 VQWCPFGSLARLPSSFEDGDFSSTAYHDLLGQHAIFAEHTAVSSATHPCPYIAYFGPIHP 180

Query: 181 VQVLLKLRISVVTG------MAPHQYPVKYHLP---MHFLQWIFIIKIGSITHCPFPQQT 240
                                 P + P  Y  P   +H+  W       S T+   P   
Sbjct: 181 XXXXXXXXXXXXFSGHWNGPSVPSEIPSSYAFPAVDLHYQNWEHHSPPFSTTNNRVPGAD 240

Query: 241 IVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGSNARARD 300
              +  +++R        L    +   P  +   S ARVGSSVASSMIPPYPGSNARARD
Sbjct: 241 QPSVPSVAQRPATRVGSELPRSGSVLHPFLVGHSSGARVGSSVASSMIPPYPGSNARARD 300

Query: 301 RVQALQAYY-QQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYSSASSG 360
           RVQALQAYY QQPSTTG+IR PAISG RRSS++RG+SQAPMASSS+QP+GFYFYSSAS+G
Sbjct: 301 RVQALQAYYQQQPSTTGTIRTPAISGGRRSSNHRGISQAPMASSSEQPSGFYFYSSASAG 360

Query: 361 RNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSFRQRHG 417
           R+FQ ENT+PNRFH WER+HLPSFGL+Q+ERDPGWGEIHQG ASVSDP+IRSSSFRQRHG
Sbjct: 361 RSFQPENTMPNRFHAWEREHLPSFGLSQIERDPGWGEIHQG-ASVSDPNIRSSSFRQRHG 420

[Close]

BLAST of Carg25020 vs. TrEMBL
Match: tr|A0A0A0LVZ9|A0A0A0LVZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569320 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 3.3e-156
Identity = 295/430 (68.60%), Postives = 324/430 (75.35%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFHL 60
           MGLGNDD+AVAEDGDYGD GC AG GKSFGSVPCSICLDVV DSGDRSWAKLQCGHQFHL
Sbjct: 1   MGLGNDDDAVAEDGDYGDAGCAAGGGKSFGSVPCSICLDVVADSGDRSWAKLQCGHQFHL 60

Query: 61  DCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAFG 120
           DCIGSAFNIKGAMQCPNCRK+EKGQWLYANGCRSFPDF+MDDWTHEEDLYDLSYSEMAFG
Sbjct: 61  DCIGSAFNIKGAMQCPNCRKVEKGQWLYANGCRSFPDFNMDDWTHEEDLYDLSYSEMAFG 120

Query: 121 VQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLHQ 180
           VQWCPFG+LARLP SFEDGDFSSTAYHDLLGQHA   +   V    H       F P+H 
Sbjct: 121 VQWCPFGSLARLPSSFEDGDFSSTAYHDLLGQHAIFAEHTAVSSATHPCPYIAYFGPIHP 180

Query: 181 VQVLLKLRISVVTG------MAPHQYPVKYHLP---MHFLQWIFIIKIGSITHCPFPQQT 240
                                 P + P  Y  P   +H+  W       S T+   P   
Sbjct: 181 XXXXXXXXXXXXFSGHWNGPSVPSEIPSSYAFPAVDLHYQNWEHHSPPFSTTNNRVPGAD 240

Query: 241 IVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGSNARARD 300
              +  +++R        L    +   P  +   S ARVGSSVASSMIPPYPGSNARARD
Sbjct: 241 QPSVPSVAQRPATRVGSELPRSGSVLHPFLVGHSSGARVGSSVASSMIPPYPGSNARARD 300

Query: 301 RVQALQAYY-QQPSTTGSIRAPAISGARRSSSNRGLSQAPMASSSDQPNGFYFYSSASSG 360
           RVQALQAYY QQPSTTG+IR PAISG RRSS++RGLSQAPMASSS+QP+GFYFYSSAS+G
Sbjct: 301 RVQALQAYYQQQPSTTGTIRTPAISGGRRSSNHRGLSQAPMASSSEQPSGFYFYSSASAG 360

Query: 361 RNFQLENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSSFRQRHG 417
           R+FQ EN +PNRFH WER+HLPSFGL+Q++RDPGWGEIHQG ASVSDP+IRSSSFRQRHG
Sbjct: 361 RSFQPENAMPNRFHAWEREHLPSFGLSQIDRDPGWGEIHQG-ASVSDPNIRSSSFRQRHG 420

[Close]

BLAST of Carg25020 vs. TrEMBL
Match: tr|A0A061F496|A0A061F496_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026663 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.8e-120
Identity = 252/439 (57.40%), Postives = 294/439 (66.97%), Query Frame = 0


Query: 1   MGLGND--DEAVAEDGDYGDGGCGAGCG-KSFGSVPCSICLDVVDDSGDRSWAKLQCGHQ 60
           MGLG++  D+ V +DG         G G KSF SV CSICL+ V D+GDRSWAKLQCGHQ
Sbjct: 1   MGLGSNGGDDVVVDDGXXXXXXXDCGNGEKSFCSVSCSICLETVADNGDRSWAKLQCGHQ 60

Query: 61  FHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEM 120
           FHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRS+P+FS+DDWTH+EDLYDLSYSEM
Sbjct: 61  FHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSYPEFSVDDWTHDEDLYDLSYSEM 120

Query: 121 AFGVQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIP 180
           +FGV WCPFG++ARLP SFE+G+FSST YH+LLGQHA   +   V    H       F P
Sbjct: 121 SFGVHWCPFGSVARLPSSFEEGEFSSTTYHELLGQHAIFAEHSAVSSASHPCPYVAYFGP 180

Query: 181 -LHQVQVLLKLRISVVTGM--------APHQYPVKYHLP---MHFLQWIFIIKIGSITHC 240
            +H         +S  +           P + P  Y  P   +H+  W       S +  
Sbjct: 181 TIHPSSSNSSGSVSDSSNFNSHWNGPSVPSEIPTSYAFPAVDLHYHGWEHHSPPFSTSSS 240

Query: 241 PFPQQTIVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGS 300
                    +  +S+R      D+  S  ++  P  +   S AR GSSVASS+IPPYPGS
Sbjct: 241 RIGSSDQPSIPPVSQRSSRSSTDMPRSG-SFMHPFVVGHSSGARAGSSVASSLIPPYPGS 300

Query: 301 NARARDRVQALQAYY--QQPSTTGSIRAPAISGARRSSSNRGLSQ-APMASSSDQPNGFY 360
           NARARDRVQALQAYY  QQPST+ +IR P I G+RRSSS+R L+Q  P+ASSSDQ  GFY
Sbjct: 301 NARARDRVQALQAYYQQQQPSTSPAIRTPIIPGSRRSSSHRSLAQVGPVASSSDQVGGFY 360

Query: 361 FYSSASSGRNFQ-LENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIR 417
           F  S +SGRNFQ  EN +  RFH WERDHLPSF LNQ++RD GWG  HQ AA  SDP IR
Sbjct: 361 FVPSGTSGRNFQEAENPLSTRFHAWERDHLPSFSLNQVDRDSGWGAFHQ-AAGGSDPGIR 420

[Close]

BLAST of Carg25020 vs. TrEMBL
Match: tr|M5WAY7|M5WAY7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G320100 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 5.4e-119
Identity = 249/445 (55.96%), Postives = 292/445 (65.62%), Query Frame = 0


Query: 1   MGLGNDDEAVAEDGDYGDGGCGAGCGKSF-GSVPCSICLDVVDDSGDRSWAKLQCGHQFH 60
           MGLG+D+E V ED D          GKS+ GSV CSICL+VV D+GDRSWAKLQCGHQFH
Sbjct: 1   MGLGSDEEVVVEDSD-XXXXXXXXXGKSYGGSVSCSICLEVVADNGDRSWAKLQCGHQFH 60

Query: 61  LDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAF 120
           LDCIGSAFNIKGAMQCPNCRKIEKGQWLYANG RS  +F +DDWTH+EDLYDL YSEM+F
Sbjct: 61  LDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGYRSIQEFGVDDWTHDEDLYDLGYSEMSF 120

Query: 121 GVQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQLIPV----HILLTSDLFIPLH 180
           GV WCPFG+LARLP SFE+G+FS T+YHDLLGQHA   +   V    H       F P+H
Sbjct: 121 GVHWCPFGSLARLPSSFEEGEFSPTSYHDLLGQHAIFAEHTAVSSAGHPCPYIAYFGPIH 180

Query: 181 QVQVLLKLRISVVTGM--------APHQYPVKYHLP---MHFLQWIFIIKIGSITHCPFP 240
                    +S  +           P + P  Y  P   +H+  W          H P P
Sbjct: 181 PSSSNSSGSVSEASNFNHHWSGTSVPSEIPNSYAFPAMDLHYHSWEH--------HSPPP 240

Query: 241 QQTI---------VLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMI 300
             T            +  +++R      DL  S  ++  P  +   SSAR GSSV SSMI
Sbjct: 241 FSTTNNHIGGAEQGSIPSVTQRSARPSSDLPRSG-SFMHPFLVGHSSSARAGSSVTSSMI 300

Query: 301 PPYPGSNARARDRVQALQAYY--QQPSTTGSIRAPAISGARRSSSNRGLSQ-APMASSSD 360
           PPYPGSNARARDRVQALQAYY  QQPS + ++R P I GARRSSS RG++Q  P+ASSSD
Sbjct: 301 PPYPGSNARARDRVQALQAYYQQQQPSNSPTMRTPIIQGARRSSSQRGVAQVGPVASSSD 360

Query: 361 QPNGFYFYSSASSGRNFQ-LENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASV 417
           Q  GFYF+ S SSGRN+Q  EN +PNRFH WERDHLPSF +NQ++RD GW  +HQG  S 
Sbjct: 361 QNGGFYFFPSGSSGRNYQEAENPLPNRFHAWERDHLPSFSMNQVDRDQGWAAVHQG-GSG 420

[Close]

BLAST of Carg25020 vs. TrEMBL
Match: tr|B9RFB9|B9RFB9_RICCO (DNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1433520 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.0e-117
Identity = 251/436 (57.57%), Postives = 292/436 (66.97%), Query Frame = 0


Query: 1   MGLGN-DDEAVAEDGDYGDGGCGAGCGKSFGSVPCSICLDVVDDSGDRSWAKLQCGHQFH 60
           MGLGN +++ VA+DGD GD G G GCGKSFGSV CSICLDVV D+GDRSWAKLQCGHQFH
Sbjct: 1   MGLGNSENDVVADDGD-GDCG-GGGCGKSFGSVSCSICLDVVTDNGDRSWAKLQCGHQFH 60

Query: 61  LDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSFPDFSMDDWTHEEDLYDLSYSEMAF 120
           LDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRS P+FSMDDW H+EDLYDLSYSEM+F
Sbjct: 61  LDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSLPEFSMDDWAHDEDLYDLSYSEMSF 120

Query: 121 GVQWCPFGNLARLPPSFEDGDFSSTAYHDLLGQHAYLLQ-----LIPVHILLTSDLFIPL 180
           GV WCPFG+LARLP SFE+G+FSS AYHDLLG HA   +         H       F P+
Sbjct: 121 GVHWCPFGSLARLPSSFEEGEFSSNAYHDLLGHHAIFAEHTAAVSSATHPCPYIAYFGPV 180

Query: 181 HQVQVLLKLRISVVTGM--------APHQYPVKYHLP---MHFLQWIFIIKIGSITHCPF 240
           H         +S  +           P + P  Y  P   +H+  W       S +    
Sbjct: 181 HPSSSNSSGSVSDGSNFNNHWSGPSVPGELPSSYAFPAIDLHYHGWEHHSPPFSTSSSRI 240

Query: 241 PQQTIVLLVLISRRLHPLPKDLLESVLNYQDPECILFFSSARVGSSVASSMIPPYPGSNA 300
                  +  +S+R      DL  S  ++  P  +   SSAR GSSV+S+MIPPY GSNA
Sbjct: 241 GSTDQPSIQPVSQRPARSSSDLSRSG-SFMHPFLVGHSSSARAGSSVSSTMIPPYQGSNA 300

Query: 301 RARDRVQALQAYY-QQPSTTGSIRAPAISGARRSSSNRGLSQ-APMASSSDQPNGFYFYS 360
           RARDRVQALQAYY QQP ++ +I AP ISG RRSS+ RGLSQ  P+ASSSDQ  GFYF  
Sbjct: 301 RARDRVQALQAYYQQQPGSSPAIHAPIISGTRRSSNYRGLSQVGPVASSSDQ-TGFYFVP 360

Query: 361 SASSGRNFQ-LENTVPNRFHPWERDHLPSFGLNQMERDPGWGEIHQGAASVSDPSIRSSS 417
             +SGRNFQ  +N+ P RF  WERDHL  F L+Q++R+  W  +    AS SDP +RSSS
Sbjct: 361 PGTSGRNFQEADNSPPIRFRAWERDHLQPFSLSQVDRESSW--LFHQTASGSDPGLRSSS 420

The following BLAST results are available for this feature:

BLAST of Carg25020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022969703.1	9.6e-176	75.75	E3 ubiquitin-protein ligase RFI2-like [Cucurbita maxima]	[more]
XP_022928757.1	1.5e-173	74.48	E3 ubiquitin-protein ligase RFI2-like [Cucurbita moschata]	[more]
XP_023530252.1	4.4e-173	74.25	E3 ubiquitin-protein ligase RFI2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008450612.1	4.0e-158	69.30	PREDICTED: uncharacterized protein LOC103492151 [Cucumis melo]	[more]
XP_023515946.1	1.2e-157	69.89	E3 ubiquitin-protein ligase RFI2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25020 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05545.1	2.4e-72	40.51	RING/U-box superfamily protein	[more]
AT2G47700.1	2.3e-46	61.81	RING/U-box superfamily protein	[more]
AT2G15260.1	1.7e-17	41.35	RING/U-box superfamily protein	[more]
AT4G13490.1	5.0e-17	53.23	RING/U-box superfamily protein	[more]

BLAST of Carg25020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82239\|RFI2_ARATH	4.1e-45	61.81	E3 ubiquitin-protein ligase RFI2 OS=Arabidopsis thaliana OX=3702 GN=RFI2 PE=1 SV...	[more]
sp\|Q9BWF2\|TRAIP_HUMAN	2.1e-04	34.57	E3 ubiquitin-protein ligase TRAIP OS=Homo sapiens OX=9606 GN=TRAIP PE=1 SV=1	[more]
sp\|Q8VIG6\|TRAIP_MOUSE	2.1e-04	34.57	E3 ubiquitin-protein ligase TRAIP OS=Mus musculus OX=10090 GN=Traip PE=1 SV=2	[more]

BLAST of Carg25020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNZ2\|A0A1S3BNZ2_CUCME	2.7e-158	69.30	uncharacterized protein LOC103492151 OS=Cucumis melo OX=3656 GN=LOC103492151 PE=...	[more]
tr\|A0A0A0LVZ9\|A0A0A0LVZ9_CUCSA	3.3e-156	68.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569320 PE=4 SV=1	[more]
tr\|A0A061F496\|A0A061F496_THECC	3.8e-120	57.40	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_02666...	[more]
tr\|M5WAY7\|M5WAY7_PRUPE	5.4e-119	55.96	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G320100 PE=4 SV=1	[more]
tr\|B9RFB9\|B9RFB9_RICCO	1.0e-117	57.57	DNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1433520 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25020-RA	Carg25020-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 34..78 e-value: 4.2E-7 score: 39.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 34..79 e-value: 3.7E-8 score: 33.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 34..79 score: 12.179
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 30..88 e-value: 4.5E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 391..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..416
None	No IPR available	PANTHER	PTHR22937:SF37	SUBFAMILY NOT NAMED	coord: 252..414
None	No IPR available	PANTHER	PTHR22937	RING FINGER CONTAINING PROTEIN	coord: 16..156
None	No IPR available	PANTHER	PTHR22937	RING FINGER CONTAINING PROTEIN	coord: 252..414
None	No IPR available	PANTHER	PTHR22937:SF37	SUBFAMILY NOT NAMED	coord: 16..156
None	No IPR available	CDD	cd16448	RING-H2	coord: 34..79 e-value: 1.40194E-8 score: 50.1431
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 33..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25020	Cla005198	Watermelon (97103) v1	carwmB0236
Carg25020	Csa1G569320	Cucumber (Chinese Long) v2	carcuB0273
Carg25020	MELO3C015298	Melon (DHL92) v3.5.1	carmeB0249
Carg25020	ClCG03G017310	Watermelon (Charleston Gray)	carwcgB0239
Carg25020	CSPI01G26380	Wild cucumber (PI 183967)	carcpiB0277
Carg25020	Cucsa.181830	Cucumber (Gy14) v1	carcgyB0290
Carg25020	CmaCh11G011480	Cucurbita maxima (Rimu)	carcmaB0342
Carg25020	CmoCh11G011900	Cucurbita moschata (Rifu)	carcmoB0346
Carg25020	Lsi06G001020	Bottle gourd (USVL1VR-Ls)	carlsiB221
Carg25020	Cp4.1LG18g00500	Cucurbita pepo (Zucchini)	carcpeB0346
Carg25020	Cp4.1LG04g00410	Cucurbita pepo (Zucchini)	carcpeB0347
Carg25020	CsGy1G025640	Cucumber (Gy14) v2	carcgybB0260
Carg25020	MELO3C015298.2	Melon (DHL92) v3.6.1	carmedB0258
Carg25020	CsaV3_1G038740	Cucumber (Chinese Long) v3	carcucB0276
Carg25020	Cla97C03G067670	Watermelon (97103) v2	carwmbB0253
Carg25020	Bhi02G001721	Wax gourd	carwgoB0314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25020	Watermelon (97103) v2	carwmbB0252
Carg25020	Watermelon (Charleston Gray)	carwcgB0238
Carg25020	Watermelon (97103) v1	carwmB0235