Carg25009 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25009
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger CCCH domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_187 : 328618 .. 334714 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACTCCACACTTAGGGTTTCCACCTTCTTCTTCTTCTTCTTCCAATTATTCTTGCGTTCTCTCTGATCTCTGCAACTCTTCTTCTACTGCTTGCTTTCTTTCTCGATTTACTTTCTCGATCTCGATCTGTACTTCCTTACAATGGATATGCGCAAGCGAGGGAGGCCTGAAGCTGCCTTCAATTCTAATGGTTCCTTTAAGAAGCATAAGCAAGGTTCGTTTCTTTTGTTTTGTTTTTTTTTTTGTTTTATTTTCTGTTTTTGGGATTGTGTTCGTTGTTCTGTTTGTTGGAGTGTTAGTTCGATGCTTTGTCTCGTTCGTTTGTACCACTAGTTTGAGCTTTATCTGGTTGCTTATATCTGGGAGGAGAGAACATTTATGTGCTTAGCTAGTGCTTTGCTTTGTTCGTTGTTGGGGGAGGATGGTTTTTTGGCCTCTGTTTGTTATTCGTTTCTTTTCTGAAGTTGGAACTTTTCGCTTTTACTGTCTCACTGGTTCTTCTTTTATTTGTTTCTACGGATTTTTGAGTTAGTGGCGCCACGTGTTCGCGCTCCGTGATCTACCCGTATGTATGCGTTTGATCCGATGTCATTTTACTATACTTCTTCAACTAGGGATAACTGGAATACTCCTTTAGTAAGTGCATCTGCTTTAAGTAATTGAAGACGGTTGTTGGTTGTAGGTTATGAGAGGGGTTAGATATAACTAGTGGTGTAATAGGAGGGTTAGTAATTGGACGACTCTTAGAATTGTGCCTGTTAGTGGTGAGATGTGGGACCATGTGAGGGTTTTAGTCTCCATTGTCATCCTTTAGCAAAGTGTGCGTAGGGTTCAGTATCGAATTACAAGTATGGTGGAGCGTGGAGCCTGCCCTTTTCTTGTTTTCCATCACTTCTGTGTTTTTCATCAACATTCTCAACAGACCATGGTTTGGTCTCTCTCCACTTTTAACACCTCAGAATCGATCATTATTGCTTTATCCAGTAGTATGTTGAGAATGTTGATGAAAAGCAAAGATTTGGGAAAGAATCTCTCTTGTTGAGTGCCTCTTATTTCAACTATTCTCCTTGGACTAGAATCTAAAATTGGTAATGCAGATTTGAATCCAATTTTTTTCCATTTATTGTGAACTTGAAATTGTCGTAAAAAAATTCCAATCAGTTTGATCCCTCCTTTTGTTTTATTTAATGTTCTGCCTTGATCCACTTGGCTACATAAGCCCCTACCCCCGCACAGGTTTAAGTCTCCAGTTTTTTGTTCTTTATTCTTGATTACAACTTTCAAGTCTTATGGTAGAACCCTTGGTTTTTAAAGCTCTAGGATTGTTGAAACTCAGAAGTACTGATCACCATCCATTAAAATCGCTAGTTACCCTGTCATTAGGTGACTAGCTCCTCAGCCTTCCAGCATATTTGAGTTGTATACACTTTGAAGGGAATATGGGTTGAATATGGAAAAGATCTATTTAAAAAATTATGACTTTAAGAACAATTCCTGAATATCTTGTTCATTTGCTGCAATATTTTTTCTTTGAGCGATGAGCGAGGGAAACAATTGTTTGCATCATATTTATTTATGGAAAAGGTACACTTTGGATCAAGAAAAAAAAAATTAAAATTGTTCTCGGAACAATTTTATTTTATCCTTAGATCAGTCATTAAGCTTGGAGTGGAGGGTTAAAATACTTCATCTACCATTGACAAAATTTGGATCTAGGTGGTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTAAAAAAATAAACTTTGTTTTGGTGTTGGGCCTTATTGTATATATAAACCTAGGTAACCCCACAATTCAACTGAAACAGTTGAAGTTACCAATCATATATTTAGATTGTTACCCTACAGCAACAGAAAGCTACAAATTATTGAGTAATTGTTTTAGTTGCCTAAATAATTTAAGTGTGAAGATGTATTAAATCATTAGAGTAAAAATCTTAACAAACTGTAACTGAGAAAGAATAATTAATGTTTTGCAACAGAACTGGAGTCCTTATCAACTGTAGGGGGCAAATCGAAGCCATGCACCAAGTTTTTCAGGTTCATATCTTACCTACCTAAATAAGTATTTAAGCTGCATATTATCTCTCCCTAATCATCTAAACTTGTTGTAAGAATTTAATTGATCATGAATTACAAGATAAAGCTGAGTAATTGCGCCTCTGAAAACTGGGAATACAGGTATAAATTATTACTCTAAGCCTTCAACCAAGTCAATAAAACACAAAACACAGAGGCTCTCTCTCTCTCTGTTTCATTTATATTTTGCACTGCACGTGGGATACCATCTCATTCTCATTGGTTACAAATTAGTTTGATCCGTTCTTTTTTATTTTATTTTTATTATTTTTATTTTTTTTATTTAAATTTTGGTTGATTATTATTCCCTTTTGGTCCAGTTCTATTTTACTAGCTTGCGTCCATCATTTATCTTTGTAATGAGGTTTTGAGCCCTAATTTTTTTTTTGTCTACACATCTCTTATCTGAATAGAGATGACTTATCTTCCTTTCCCTTATGAATCTCTAGTAGAGAGAAATATGGTCAGCGTCTAACCTTTAAGCACAAATTGTTTTTTAATAAAAGAAGAATAGAGGAAAAAAATCAATTTTGTACCCCTAAACTTTGAGGCTTGTATCAAATAAAACTCCAGAGTAATAATTGTATAAATTTGATTCCTAAACTTTCATAAGTGAATCAATGTAGACCCTATATTAGTGAGTTATAACAATTTTAACTTAGTTTCATTTCAAATCAACTCATAGTTGGGTAAATATAATTCTTCTTCCAAAAGTCTGCTAAAATAGTAGGAAAACGTATCACGTAATTCTTCCTTAATAAGTAAAGAAAAATAGAGGAAGAAGAAAAGATGGAACCACTCATAAATAGTGAGAGTGCTACTATCCATTTGATTCTTCTCCATTTGATTCTTCTCTATTAATGCATTAAAGGTCTTAAAATAGAATCCTAATGAAGGGTTTAAATTGATTCACTTGAAAGTTCAGATTTTCATTGATACAATTATTAGTTTGAGGTTTTAATTGATGCAACTCTAAAATTTGGAGGTGTAATTTGATTTTTATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGTTATTACAGTTGCCTTTGCATCGTTTTTCCTTCTAGCAGCTAATTTAACTAGAGCATGCCATTTGCTTCAATTTTTAGTACCTCTATTTAATATTCTTCAGTATATTGATGGCTTGTAGAAATATGGTTAGAAAGTATGGGTGGAGGGGTTGAGGCTTAAAAGTATTTTGAGATCTGTGTTCTAATTTGCCACATTGTATTCCGTCGATGTTTGAGTTGTTTGTTATCAGCTGTGAGTTTTCTAGTATTAATGGATCATGCTGATGGCTTGTCCTTATCTTTGTCTTTGTTGGCACTCCATGTCTTTCAATCTCTTTTTTTCGCCGCTATAAATCATTGTAAGCGAGCATCTTTATTCTTTTAAAAAGGACACAGGCCTCTATTTTTTCTTGTCCCAGTAACAATAGATTTTCTAATTGTTTGTGACGATCTACTAAGTGCCTATAGTTTTGAATTTCTTGAATGGATTAGACCACTCACCAAGATTTCAACTCATGTCTGAAATAGATTTTCTTGTAGGGCAATAATTAGCCATAAGAGCCTCCTATTCACTCTCCTGATTGCATTGTGTTTAATCTTTTATCAAGATGTGAAGATTTAGTTTGGGTTATTTGATTTGCTTAAGCTTCTCTTTGAGGTGTGGCAATTTGATTTGGTTACTTGATATGCTTTAAACGCTTGCCAACCTTATACTTGATACACGGGGTCCTACTTAAGATACTAGGTTGAACGTTTAAAAATAGTTTTCTGTTACCAAGTATAATTCTTTTTTTTTTTAATATGGATAACCTGTTTGGCAGGATATATTTTCATCAGAATAAATAACGGTAGAAACTAGAAATGAAAAAGAACAGAAAATAGTTTCATACTATGGATTTAGAACATAGTTTCTAAAGTAATATGTAGTCTAATGTTGGGACTGTTTGGAAGCTGTTTCTAAAAAATGAAGTCTTGTTTCCAAAAATGAAAAGAATTAACTGTGGTTTTAAGTTTCAAACGTTGGTGGTGGTGGGTTTTTTACTTTAATTTCTGCGCTAATTCTTAAAAATAATTTTGATCTTATAATAAAATAAACATATATATTTTGGTAGCACGGTGAGGGAGAAAACTGTTCTAAAAAGGATGGGACCTTTTAGCACTAACAGGGAGTTGGGGCTTGATGGGAGGTTGGTTGACAGATTTGGTACTTTTCACCCCAAAGGGGAGAAAAACTGCTAAAGGTTGCCAAGTTAATTGCAAAAGACACAAAAGGTCTTTGTGAGGAAGCTCGAGTATTCTTTCTATTTGCAACTTCGTTTCTAGTGGGGCTGCACTTAACAAAAAGGCTGTTTATAGTTTCTTTTTCCAGTAGAGCAGATCTTTGTTTTATTTGTTTCGTTCTAAAGTTTCTTTCTAGACTGAAGAAAGCCATTTTTCAAAACTACCCGAAATATCTCAGAAATTTTTTATGCTATTTCTCAATAACATACAACTTCTGGAGGAGTTTGGGCATTTAGAAAGAGGAAAACATGATATTACTTTATGTCAAAAGATATGCATGCGGTTCTTGCGGAGATTGATTTCTCCTCTTTGTATGCTTGTGTTTGATTTCTCCGAGTGAATACTAATCTTTAGATTTATGAATTTCCGAGGGATTCTGGTTTGGAGGTTTGGTTGATCTTACAGTTGTGTTATTCATCTTTTTGGATTTCAGCACTGCTGGTTGCCCATTTGGTGAAAGCTGCCACTTTTTGCATTACGTTCCTGGTGGTTATAATGCTGTTGCTCAAATGATGAATCTTGCTCCTGTTGGTTCTCAACCATCCAGAAATATGGCTGCCCCTCCTGTCTCCAACGGCGGGTCCTCTGCTCCGTCCCAAATCAAAACTCGCATGTGCAACAAGTTCAACAGCGCTGAAGGCTGCAAGTTCGGTGATAAATGTAACTTTGCCCATGGAGAGTGGGAACTCGGGAGGCCTACCCCTCCATCTCACGATAATCCCCGTGGTATGGGAGGACATATGGTTGGTCGTATGGGTGGGCGAATGGACCTGCCACCACCAGGTCCTGCTGCAAGCTTTGGCGCTTCAGCTACTGCGAAGATTAGTATAGATGCATCCCTCGCCGGAGCGATCATTGGGAAGGGTGGGATTAACTCGAAACAGATTTGTCGCCAAACGGGTGCCAAACTCTCCATCAGGGACCATGAATCAGACCCAAATCTCAGGAACATAGAACTGGAGGGCACTTTTGAGCAAATTAACGAAGCAAGTGCAATGGTGAGGGAGCTCATTATCACAGTTTCAATGTCAGGACCCGGCAAAGGCCATGGTGCGATGGGAGGAGGAGGCCCTGCTCCTTCAGGTAGCAACTATAAAACAAAGCTATGTGATAATTTTGCAAAAGGTTCTTGTACTTTTGGTGAGAGATGCCATTTTGCGCACGGAGCTGCCGAGTTACGTAAGTCTGGAGTATGATCAAGTTCCCGATTTTGTCGAGCTTTTATTGTTATAAGGGAGTTTTTGCTTTAAAGCGTGTCATCGACGACACGAGTGCGATATTGAAGTTGAAGTTGAGGAGGGTTGGTGGTTCTTGTTCTTGTTATGTTGTAGCTTTATGAGAGTATGTCTTGGTATTTGTTGATTAGAAGATAATTAAGTTAAATCATTTTCTTCAATGTTCATTACATCAGATGTTTTCATAATTTACATAATTTGGTTAAATGTTTGTCCCTTTCAATCGTAGAACAGCAAATAGCTAAACACAGACTTCGATATTCGATATTTTTTGTAAAGACCTTCTCCAATGGACTAAATCGAAATTTTGAGTTGGTTGGATTGGTGACTCAAGCAACTCAAATAACTCAAATAGAGTGTCTAACTTAACCTTCTACTTTCGAGTTGGGTAGGATTAAAACAATCATACTTATTCTTAGTACGTGTTACATTAATAATTAAAATTAAAATGCATTACT

mRNA sequence

CGACTCCACACTTAGGGTTTCCACCTTCTTCTTCTTCTTCTTCCAATTATTCTTGCGTTCTCTCTGATCTCTGCAACTCTTCTTCTACTGCTTGCTTTCTTTCTCGATTTACTTTCTCGATCTCGATCTGTACTTCCTTACAATGGATATGCGCAAGCGAGGGAGGCCTGAAGCTGCCTTCAATTCTAATGGTTCCTTTAAGAAGCATAAGCAAGAACTGGAGTCCTTATCAACTGTAGGGGGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAAAGCTGCCACTTTTTGCATTACGTTCCTGGTGGTTATAATGCTGTTGCTCAAATGATGAATCTTGCTCCTGTTGGTTCTCAACCATCCAGAAATATGGCTGCCCCTCCTGTCTCCAACGGCGGGTCCTCTGCTCCGTCCCAAATCAAAACTCGCATGTGCAACAAGTTCAACAGCGCTGAAGGCTGCAAGTTCGGTGATAAATGTAACTTTGCCCATGGAGAGTGGGAACTCGGGAGGCCTACCCCTCCATCTCACGATAATCCCCGTGGTATGGGAGGACATATGGTTGGTCGTATGGGTGGGCGAATGGACCTGCCACCACCAGGTCCTGCTGCAAGCTTTGGCGCTTCAGCTACTGCGAAGATTAGTATAGATGCATCCCTCGCCGGAGCGATCATTGGGAAGGGTGGGATTAACTCGAAACAGATTTGTCGCCAAACGGGTGCCAAACTCTCCATCAGGGACCATGAATCAGACCCAAATCTCAGGAACATAGAACTGGAGGGCACTTTTGAGCAAATTAACGAAGCAAGTGCAATGGTGAGGGAGCTCATTATCACAGTTTCAATGTCAGGACCCGGCAAAGGCCATGGTGCGATGGGAGGAGGAGGCCCTGCTCCTTCAGGTAGCAACTATAAAACAAAGCTATGTGATAATTTTGCAAAAGGTTCTTGTACTTTTGGTGAGAGATGCCATTTTGCGCACGGAGCTGCCGAGTTACGTAAGTCTGGAGTATGATCAAGTTCCCGATTTTGTCGAGCTTTTATTGTTATAAGGGAGTTTTTGCTTTAAAGCGTGTCATCGACGACACGAGTGCGATATTGAAGTTGAAGTTGAGGAGGGTTGGTGGTTCTTGTTCTTGTTATGTTGTAGCTTTATGAGAGTATGTCTTGGTATTTGTTGATTAGAAGATAATTAAGTTAAATCATTTTCTTCAATGTTCATTACATCAGATGTTTTCATAATTTACATAATTTGGTTAAATGTTTGTCCCTTTCAATCGTAGAACAGCAAATAGCTAAACACAGACTTCGATATTCGATATTTTTTGTAAAGACCTTCTCCAATGGACTAAATCGAAATTTTGAGTTGGTTGGATTGGTGACTCAAGCAACTCAAATAACTCAAATAGAGTGTCTAACTTAACCTTCTACTTTCGAGTTGGGTAGGATTAAAACAATCATACTTATTCTTAGTACGTGTTACATTAATAATTAAAATTAAAATGCATTACT

Coding sequence (CDS)

ATGGATATGCGCAAGCGAGGGAGGCCTGAAGCTGCCTTCAATTCTAATGGTTCCTTTAAGAAGCATAAGCAAGAACTGGAGTCCTTATCAACTGTAGGGGGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAAAGCTGCCACTTTTTGCATTACGTTCCTGGTGGTTATAATGCTGTTGCTCAAATGATGAATCTTGCTCCTGTTGGTTCTCAACCATCCAGAAATATGGCTGCCCCTCCTGTCTCCAACGGCGGGTCCTCTGCTCCGTCCCAAATCAAAACTCGCATGTGCAACAAGTTCAACAGCGCTGAAGGCTGCAAGTTCGGTGATAAATGTAACTTTGCCCATGGAGAGTGGGAACTCGGGAGGCCTACCCCTCCATCTCACGATAATCCCCGTGGTATGGGAGGACATATGGTTGGTCGTATGGGTGGGCGAATGGACCTGCCACCACCAGGTCCTGCTGCAAGCTTTGGCGCTTCAGCTACTGCGAAGATTAGTATAGATGCATCCCTCGCCGGAGCGATCATTGGGAAGGGTGGGATTAACTCGAAACAGATTTGTCGCCAAACGGGTGCCAAACTCTCCATCAGGGACCATGAATCAGACCCAAATCTCAGGAACATAGAACTGGAGGGCACTTTTGAGCAAATTAACGAAGCAAGTGCAATGGTGAGGGAGCTCATTATCACAGTTTCAATGTCAGGACCCGGCAAAGGCCATGGTGCGATGGGAGGAGGAGGCCCTGCTCCTTCAGGTAGCAACTATAAAACAAAGCTATGTGATAATTTTGCAAAAGGTTCTTGTACTTTTGGTGAGAGATGCCATTTTGCGCACGGAGCTGCCGAGTTACGTAAGTCTGGAGTATGA

Protein sequence

MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKCNFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITVSMSGPGKGHGAMGGGGPAPSGSNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV

Homology

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BLAST of Carg25009 vs. NCBI nr
Match: XP_022928715.1 (zinc finger CCCH domain-containing protein 14-like [Cucurbita moschata])

HSP 1 Score: 551.6 bits (1420), Expect = 1.6e-153
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120
           PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC
Sbjct: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120

Query: 121 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL 180
           NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL
Sbjct: 121 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL 180

Query: 181 AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITX 240
           AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITX
Sbjct: 181 AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
           XXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 297

[Close]

BLAST of Carg25009 vs. NCBI nr
Match: XP_023545090.1 (zinc finger CCCH domain-containing protein 31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 550.4 bits (1417), Expect = 3.6e-153
Identity = 273/297 (91.92%), Postives = 274/297 (92.26%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120
           PGGYNAVAQMMNLAPVGSQPSRNMAAPPV+NGGSSAPSQIKTRMCNKFNSAEGCKFGDKC
Sbjct: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVTNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120

Query: 121 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL 180
           NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL
Sbjct: 121 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL 180

Query: 181 AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITX 240
           AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIIT 
Sbjct: 181 AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITV 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
                                 NYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV
Sbjct: 241 SMSGPGKAHGAMGGGGPAPSGSNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 297

[Close]

BLAST of Carg25009 vs. NCBI nr
Match: XP_022967865.1 (zinc finger CCCH domain-containing protein 31 [Cucurbita maxima])

HSP 1 Score: 544.3 bits (1401), Expect = 2.6e-151
Identity = 273/298 (91.61%), Postives = 274/298 (91.95%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120
           PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC
Sbjct: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120

Query: 121 NFAHGEWELGRPTPPSHDNPRGM-GGHMVGRMGGRMDLPPPGPAASFGASATAKISIDAS 180
           NFAHGEWELGRPTPPSHDNPRGM GGHMVGRMGGRMDLPPPGPAASFGASATAKISIDAS
Sbjct: 121 NFAHGEWELGRPTPPSHDNPRGMGGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDAS 180

Query: 181 LAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIIT 240
           LAGAIIGKGGINSKQICRQTGAKLSIRD+ESDPNLRNIELEGTFEQINEASAMVRELIIT
Sbjct: 181 LAGAIIGKGGINSKQICRQTGAKLSIRDNESDPNLRNIELEGTFEQINEASAMVRELIIT 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
                                  NYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV
Sbjct: 241 VSMSGPGKAHGAMGGGGPAPSGSNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298

[Close]

BLAST of Carg25009 vs. NCBI nr
Match: XP_008442098.1 (PREDICTED: zinc finger CCCH domain-containing protein 36-like [Cucumis melo])

HSP 1 Score: 516.9 bits (1330), Expect = 4.5e-143
Identity = 263/305 (86.23%), Postives = 268/305 (87.87%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVG KSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPP-VSNGGSSAPSQIKTRMCNKFNSAEGCKFGDK 120
           PGGYN VAQMMNLAPVG+QPSRN+AAPP V+NGGSSAPSQ+KTRMCNKFN+AEGCKFGDK
Sbjct: 61  PGGYNVVAQMMNLAPVGAQPSRNVAAPPSVTNGGSSAPSQVKTRMCNKFNTAEGCKFGDK 120

Query: 121 CNFAHGEWELGRPTPPSHDNPRGMGG-------HMVGRMGGRMDLPPPGPAASFGASATA 180
           CNFAHGEWELGRP PPSHDNPR M         HMVGRMGGRMDLPPPGPAASFGASATA
Sbjct: 121 CNFAHGEWELGRPNPPSHDNPRAMXXXXXXXXVHMVGRMGGRMDLPPPGPAASFGASATA 180

Query: 181 KISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAM 240
           KISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAM
Sbjct: 181 KISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAM 240

Query: 241 VRELIITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAEL 298
           VRELIIT                       NYKTKLCDNFAKGSCTFGERCHFAHGAAEL
Sbjct: 241 VRELIIT-VSMAGPGKASGGMGGGPAPTGSNYKTKLCDNFAKGSCTFGERCHFAHGAAEL 300

[Close]

BLAST of Carg25009 vs. NCBI nr
Match: XP_004146386.1 (PREDICTED: zinc finger CCCH domain-containing protein 31-like [Cucumis sativus] >KGN54808.1 hypothetical protein Csa_4G507380 [Cucumis sativus])

HSP 1 Score: 513.5 bits (1321), Expect = 4.9e-142
Identity = 261/306 (85.29%), Postives = 267/306 (87.25%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVG KSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPP-VSNGGSSAPSQIKTRMCNKFNSAEGCKFGDK 120
           PGGYN VAQMMNLAPVG+QPSRN+AAPP V+NGG SAPSQ+KTRMCNK+N+AEGCKFGDK
Sbjct: 61  PGGYNVVAQMMNLAPVGAQPSRNIAAPPSVTNGGPSAPSQVKTRMCNKYNTAEGCKFGDK 120

Query: 121 CNFAHGEWELGRPTPPSHDNPRGM--------GGHMVGRMGGRMDLPPPGPAASFGASAT 180
           CNFAHGEWELGRP PPSHDNPR M          HMVGRMGGRMDLPPPGPAASFGASAT
Sbjct: 121 CNFAHGEWELGRPNPPSHDNPRAMXXXXXXXXXXHMVGRMGGRMDLPPPGPAASFGASAT 180

Query: 181 AKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASA 240
           AKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASA
Sbjct: 181 AKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASA 240

Query: 241 MVRELIITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAE 298
           MVRELIIT                       NYKTKLCDNFAKGSCTFGERCHFAHGAAE
Sbjct: 241 MVRELIIT-VSMAGPGKASGGMGGGPAPTGSNYKTKLCDNFAKGSCTFGERCHFAHGAAE 300

[Close]

BLAST of Carg25009 vs. TAIR10
Match: AT5G06770.1 (KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 274.6 bits (701), Expect = 7.0e-74
Identity = 162/300 (54.00%), Postives = 185/300 (61.67%), Query Frame = 0


Query: 1   MDMRKRGRPEAA--FNSNGSFKKHKQELESLST-VGGKSKPCTKFFSTAGCPFGESCHFL 60
           MD RKRGRPEAA   NSNG FK+ KQE+ES+ST +G KSKPCTKFFST+GCPFG++CHFL
Sbjct: 1   MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60

Query: 61  HYVPGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFG 120
           HYVPGGYNA AQM NL P  SQ SRNM        GS  P                    
Sbjct: 61  HYVPGGYNAAAQMTNLRPPVSQVSRNMQ-------GSGGPG------------------- 120

Query: 121 DKCNFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISID 180
                                          GR  GR D P  GP + FGAS T+KIS+D
Sbjct: 121 -------------------------------GRFSGRGD-PGSGPVSIFGAS-TSKISVD 180

Query: 181 ASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELI 240
           ASLAGAIIGKGGI+SKQICR+TGAKLSI+DHE DPNL+ IELEGTFEQIN AS MVRELI
Sbjct: 181 ASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELI 239

Query: 241 ITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
                                    NYKTK+CD ++KG+CT+G+RCHFAHG +ELR+SG+
Sbjct: 241 --GRLGSVKKPQGIGGPEGKPHPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]

BLAST of Carg25009 vs. TAIR10
Match: AT3G12130.1 (KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 261.9 bits (668), Expect = 4.7e-70
Identity = 169/306 (55.23%), Postives = 197/306 (64.38%), Query Frame = 0


Query: 1   MDMRKRGRPEA-AFNSN-GSFKKHKQELESLST-VGGKSKPCTKFFSTAGCPFGESCHFL 60
           MD RKRGRPEA +FNSN G +KK KQE+ES ST +G KSKPCTKFFST+GCPFGE+CHFL
Sbjct: 1   MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFL 60

Query: 61  HYVPGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFG 120
           HYVPGGYNAV+QM N+ P   Q SRNM      NGG             +F+        
Sbjct: 61  HYVPGGYNAVSQMTNMGPPIPQVSRNMQGS--GNGG-------------RFSG------- 120

Query: 121 DKCNFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISID 180
                                  RG  G              PG  ++FG SATA+ S+D
Sbjct: 121 -----------------------RGESG--------------PGHVSNFGDSATARFSVD 180

Query: 181 ASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELI 240
           ASLAGAIIGKGG++SKQICRQTG KLSI+DHE DPNL+NI LEGT EQI+EASAMV++LI
Sbjct: 181 ASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDLI 240

Query: 241 ------ITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAE 298
                   XXXXXXXXXXXX           N+KTK+C+ F+KG+CTFG+RCHFAHG AE
Sbjct: 241 GRLNSXXXXXXXXXXXXXXXMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAE 247

[Close]

BLAST of Carg25009 vs. TAIR10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-09
Identity = 41/116 (35.34%), Postives = 54/116 (46.55%), Query Frame = 0


Query: 35  KSKPCTKFFSTAGCPFGESCHFLH-----------------YVPGGYNAVAQ----MMNL 94
           + K C KF     CP+G+ C+F+H                  +  G  A  Q      NL
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNL 244

Query: 95  APVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKCNFAHGEWEL 130
             V  Q S  + A P++NGG       KTR+C KF+    C FGDKC+FAHG+ EL
Sbjct: 245 IEVNRQGSIPVPA-PMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299

[Close]

BLAST of Carg25009 vs. TAIR10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-07
Identity = 45/129 (34.88%), Postives = 58/129 (44.96%), Query Frame = 0


Query: 12  AFNSNGSFKKHKQELESLSTVGGKS----KPCTKFFSTAGCPF-GESCHFLHYVPGGYNA 71
           A NS+G+    K+   S S+  GKS    K C K F    CP+   SCHF H        
Sbjct: 46  AINSDGAESPSKKTRSSSSSEIGKSFFKTKLCFK-FRAGTCPYSASSCHFAHSAEELRLP 105

Query: 72  VAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQI------KTRMCNKFNSAEGCKFGDKC 130
                N     ++ SRN  +  VS G     +Q       KTR+CNK+ +   C FG  C
Sbjct: 106 XXXXXNWQETVTEASRNRESFAVSLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHC 165

[Close]

BLAST of Carg25009 vs. TAIR10
Match: AT2G25970.1 (KH domain-containing protein)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 48/169 (28.40%), Postives = 78/169 (46.15%), Query Frame = 0


Query: 74  APVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEG--CKFGDKCNFAHGEWELGR 133
           AP G  PS   + PP  +    A  + +       NSA+    +  +  ++ +G+   G 
Sbjct: 48  APTGLPPSSYNSVPPPMDEIQIAKQKAQEIAARLLNSADAKRPRVDNGASYDYGD-NKGF 107

Query: 134 PTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASLAGAIIGKGGIN 193
            + PS             +M G +    P    SF    T KI I     G IIGKGG  
Sbjct: 108 SSYPSEGK----------QMSGTVPSSIPVSYGSF-QGTTKKIDIPNMRVGVIIGKGGET 167

Query: 194 SKQICRQTGAKLSI-RDHESDPN--LRNIELEGTFEQINEASAMVRELI 238
            K +  Q+GAK+ + RD ++DPN   R ++L GT +QI++A  ++ +++
Sbjct: 168 IKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDVL 204

[Close]

BLAST of Carg25009 vs. Swiss-Prot
Match: sp|Q7F8R0|C3H14_ORYSJ (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 7.9e-83
Identity = 173/301 (57.48%), Postives = 202/301 (67.11%), Query Frame = 0


Query: 4   RKRGRPEAAFNSNGSFKKHKQELESLST-VGGKSKPCTKFFSTAGCPFGESCHFLHYVPG 63
           RKRG+P+ A   NG+  K  +E ES  T VG KSKPCTKFFST+GCPFGE CHFLH+ PG
Sbjct: 6   RKRGKPDGA---NGAGGKRARESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPG 65

Query: 64  GYNAVAQMMNL-APVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKCN 123
           GY AVA+M NL  P  + P   M        G   P+ +KTR+CNK+N+AEGCK+GDKC+
Sbjct: 66  GYQAVAKMTNLGGPAIAPPPGRMPMGNAVPDGPPTPT-VKTRLCNKYNTAEGCKWGDKCH 125

Query: 124 FAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPA------ASFGASATAKIS 183
           FAHGE ELG+P       P  MG    G        PPP P+      ASFGASATAKIS
Sbjct: 126 FAHGERELGKPMLMDSSMPPPMGPRPTGHFA-----PPPMPSPAMSTPASFGASATAKIS 185

Query: 184 IDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRE 243
           +DASLAG IIG+GG+N+KQI R TGAKL+IRDHESD NL+NIELEGTF+QI  ASAMVRE
Sbjct: 186 VDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRE 245

Query: 244 LIIT-XXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRK 296
           LI++                        N+KTKLC+NF KGSCTFG+RCHFAHG  ELRK
Sbjct: 246 LIVSIGGGAPPQGKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRK 297

[Close]

BLAST of Carg25009 vs. Swiss-Prot
Match: sp|Q7XPK1|C3H31_ORYSJ (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.3e-82
Identity = 188/304 (61.84%), Postives = 215/304 (70.72%), Query Frame = 0


Query: 4   RKRGRPEAAFNSNGSFKKHKQELESLST-VGGKSKPCTKFFSTAGCPFGESCHFLHYVPG 63
           RKR RP+ A N   +  K  +E ES  T +  K KPCTKFFST GCPFGE CHF H+VPG
Sbjct: 8   RKRSRPDTA-NGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPG 67

Query: 64  GYNAVAQMMNLA-PVGSQPSRNMAAPPVSNGGSSAP-SQIKTRMCNKFNSAEGCKFGDKC 123
           GY AVA+ +NL  P    P+R  A    + GG+S P S  KTRMC K+N+AEGCKFGDKC
Sbjct: 68  GYQAVAKTLNLGNPAVPAPAR--APMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKC 127

Query: 124 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPG----PAASFGASATAKISI 183
           +FAHGE ELG+P   SH++   M   M GR GGR + PPP     PA +FGASATAKIS+
Sbjct: 128 HFAHGERELGKPAYMSHES--AMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATAKISV 187

Query: 184 DASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVREL 243
           DASLAG IIGKGG+N+KQICR TG KLSIRDHESD NL+NIELEG F+QI +AS MV EL
Sbjct: 188 DASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVGEL 247

Query: 244 IIT------XXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAA 295
           I T            XXXXXXXXXXXXX    NYKTKLC+NF KG+CTFG+RCHFAHG  
Sbjct: 248 IATISPSTPAKKPAGXXXXXXXXXXXXXGGRSNYKTKLCENFVKGTCTFGDRCHFAHGEN 306

[Close]

BLAST of Carg25009 vs. Swiss-Prot
Match: sp|Q69XQ3|C3H44_ORYSJ (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.6e-75
Identity = 161/297 (54.21%), Postives = 192/297 (64.65%), Query Frame = 0


Query: 5   KRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYVPGGY 64
           KR  PE    +NG+ K+ +    S   VG K KPCTKFFST+GCPFG SCHFLH  PGGY
Sbjct: 7   KRAAPE---GTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGY 66

Query: 65  NAVAQMMNL--APVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKCNF 124
            A A+M +     V + P R    P   NG  +  S +KTRMCNK+N+AEGCK+G KC+F
Sbjct: 67  QAAAKMTSHGGTAVAAPPGRMPLGPGAPNGPPT--SSVKTRMCNKYNTAEGCKWGSKCHF 126

Query: 125 AHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPP-PG----PAASFGASATAKISID 184
           AHGE ELG+P    +  P  MG           + PP PG    P ++FGASATAKIS+D
Sbjct: 127 AHGERELGKPMLLDNSMPHPMGSM-------PFEAPPMPGPDIVPPSTFGASATAKISVD 186

Query: 185 ASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELI 244
           ASLAG IIGKGG N+K I R TGAKL+IRD+ES+PNL+NIELEGTF+QI  ASAMV ELI
Sbjct: 187 ASLAGGIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELI 246

Query: 245 ITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRK 295
           +                        N+KTKLC+NF KGSCTFG+RCHFAHG +ELRK
Sbjct: 247 V-RISGNAPPAKNPGRGSHAGGPGSNFKTKLCENFNKGSCTFGDRCHFAHGESELRK 290

[Close]

BLAST of Carg25009 vs. Swiss-Prot
Match: sp|Q9FG30|C3H52_ARATH (Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=At5g06770 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.3e-72
Identity = 162/300 (54.00%), Postives = 185/300 (61.67%), Query Frame = 0


Query: 1   MDMRKRGRPEAA--FNSNGSFKKHKQELESLST-VGGKSKPCTKFFSTAGCPFGESCHFL 60
           MD RKRGRPEAA   NSNG FK+ KQE+ES+ST +G KSKPCTKFFST+GCPFG++CHFL
Sbjct: 1   MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60

Query: 61  HYVPGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFG 120
           HYVPGGYNA AQM NL P  SQ SRNM        GS  P                    
Sbjct: 61  HYVPGGYNAAAQMTNLRPPVSQVSRNMQ-------GSGGPG------------------- 120

Query: 121 DKCNFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISID 180
                                          GR  GR D P  GP + FGAS T+KIS+D
Sbjct: 121 -------------------------------GRFSGRGD-PGSGPVSIFGAS-TSKISVD 180

Query: 181 ASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELI 240
           ASLAGAIIGKGGI+SKQICR+TGAKLSI+DHE DPNL+ IELEGTFEQIN AS MVRELI
Sbjct: 181 ASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELI 239

Query: 241 ITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
                                    NYKTK+CD ++KG+CT+G+RCHFAHG +ELR+SG+
Sbjct: 241 --GRLGSVKKPQGIGGPEGKPHPGSNYKTKICDRYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]

BLAST of Carg25009 vs. Swiss-Prot
Match: sp|Q9C7C3|C3H36_ARATH (Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=At3g12130 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 8.5e-69
Identity = 169/306 (55.23%), Postives = 197/306 (64.38%), Query Frame = 0


Query: 1   MDMRKRGRPEA-AFNSN-GSFKKHKQELESLST-VGGKSKPCTKFFSTAGCPFGESCHFL 60
           MD RKRGRPEA +FNSN G +KK KQE+ES ST +G KSKPCTKFFST+GCPFGE+CHFL
Sbjct: 1   MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFL 60

Query: 61  HYVPGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFG 120
           HYVPGGYNAV+QM N+ P   Q SRNM      NGG             +F+        
Sbjct: 61  HYVPGGYNAVSQMTNMGPPIPQVSRNMQGS--GNGG-------------RFSG------- 120

Query: 121 DKCNFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISID 180
                                  RG  G              PG  ++FG SATA+ S+D
Sbjct: 121 -----------------------RGESG--------------PGHVSNFGDSATARFSVD 180

Query: 181 ASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELI 240
           ASLAGAIIGKGG++SKQICRQTG KLSI+DHE DPNL+NI LEGT EQI+EASAMV++LI
Sbjct: 181 ASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDLI 240

Query: 241 ------ITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAE 298
                   XXXXXXXXXXXX           N+KTK+C+ F+KG+CTFG+RCHFAHG AE
Sbjct: 241 GRLNSXXXXXXXXXXXXXXXMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAE 247

[Close]

BLAST of Carg25009 vs. TrEMBL
Match: tr|A0A1S3B4W9|A0A1S3B4W9_CUCME (zinc finger CCCH domain-containing protein 36-like OS=Cucumis melo OX=3656 GN=LOC103486060 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 3.0e-143
Identity = 263/305 (86.23%), Postives = 268/305 (87.87%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVG KSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPP-VSNGGSSAPSQIKTRMCNKFNSAEGCKFGDK 120
           PGGYN VAQMMNLAPVG+QPSRN+AAPP V+NGGSSAPSQ+KTRMCNKFN+AEGCKFGDK
Sbjct: 61  PGGYNVVAQMMNLAPVGAQPSRNVAAPPSVTNGGSSAPSQVKTRMCNKFNTAEGCKFGDK 120

Query: 121 CNFAHGEWELGRPTPPSHDNPRGMGG-------HMVGRMGGRMDLPPPGPAASFGASATA 180
           CNFAHGEWELGRP PPSHDNPR M         HMVGRMGGRMDLPPPGPAASFGASATA
Sbjct: 121 CNFAHGEWELGRPNPPSHDNPRAMXXXXXXXXVHMVGRMGGRMDLPPPGPAASFGASATA 180

Query: 181 KISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAM 240
           KISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAM
Sbjct: 181 KISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAM 240

Query: 241 VRELIITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAEL 298
           VRELIIT                       NYKTKLCDNFAKGSCTFGERCHFAHGAAEL
Sbjct: 241 VRELIIT-VSMAGPGKASGGMGGGPAPTGSNYKTKLCDNFAKGSCTFGERCHFAHGAAEL 300

[Close]

BLAST of Carg25009 vs. TrEMBL
Match: tr|A0A0A0KZ79|A0A0A0KZ79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507380 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 3.3e-142
Identity = 261/306 (85.29%), Postives = 267/306 (87.25%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVG KSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPP-VSNGGSSAPSQIKTRMCNKFNSAEGCKFGDK 120
           PGGYN VAQMMNLAPVG+QPSRN+AAPP V+NGG SAPSQ+KTRMCNK+N+AEGCKFGDK
Sbjct: 61  PGGYNVVAQMMNLAPVGAQPSRNIAAPPSVTNGGPSAPSQVKTRMCNKYNTAEGCKFGDK 120

Query: 121 CNFAHGEWELGRPTPPSHDNPRGM--------GGHMVGRMGGRMDLPPPGPAASFGASAT 180
           CNFAHGEWELGRP PPSHDNPR M          HMVGRMGGRMDLPPPGPAASFGASAT
Sbjct: 121 CNFAHGEWELGRPNPPSHDNPRAMXXXXXXXXXXHMVGRMGGRMDLPPPGPAASFGASAT 180

Query: 181 AKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASA 240
           AKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASA
Sbjct: 181 AKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASA 240

Query: 241 MVRELIITXXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAE 298
           MVRELIIT                       NYKTKLCDNFAKGSCTFGERCHFAHGAAE
Sbjct: 241 MVRELIIT-VSMAGPGKASGGMGGGPAPTGSNYKTKLCDNFAKGSCTFGERCHFAHGAAE 300

[Close]

BLAST of Carg25009 vs. TrEMBL
Match: tr|A0A2I4HVP9|A0A2I4HVP9_9ROSI (zinc finger CCCH domain-containing protein 14-like OS=Juglans regia OX=51240 GN=LOC109021933 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 6.6e-119
Identity = 224/297 (75.42%), Postives = 244/297 (82.15%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MD RKRGRPEA  N+NG FKK KQE++S + VG KSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDTRKRGRPEAGLNANGGFKKFKQEMDS-TGVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120
            GGYNAVAQMMNLAP     SRNMA PP    G SAPS +KTRMCNK+N+AEGCKFGDKC
Sbjct: 61  TGGYNAVAQMMNLAPAVPAASRNMAGPPTIQNG-SAPS-VKTRMCNKYNTAEGCKFGDKC 120

Query: 121 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL 180
           +FAH EWELG+P  PSHD+PR M G + GRMGGRM+ PPPGPAASFGASATAKIS+DASL
Sbjct: 121 HFAHNEWELGKPIAPSHDDPRSM-GPIPGRMGGRMEPPPPGPAASFGASATAKISVDASL 180

Query: 181 AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITX 240
           AGAIIGKGG+NSKQICRQTGAKLSIR+HESDPNLRNIELEGTFEQI EASAMVR+LI+T 
Sbjct: 181 AGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASAMVRQLIVT- 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
                                 N+KTKLC+NF+KGSCTFGERCHFAHGAAELRKSGV
Sbjct: 241 -VSVSGPPKTHGMTGAAAPAGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRKSGV 291

[Close]

BLAST of Carg25009 vs. TrEMBL
Match: tr|A0A2I4DFQ7|A0A2I4DFQ7_9ROSI (zinc finger CCCH domain-containing protein 14-like OS=Juglans regia OX=51240 GN=LOC108979701 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 9.6e-118
Identity = 220/297 (74.07%), Postives = 241/297 (81.14%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MD+RKRGRPEA  N+NG  KK KQE++S + VG KSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDIRKRGRPEAGLNANGGAKKFKQEMDS-TGVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120
           PGGYNAVAQMMNLAP     SRNMA PP    GS+    +KTRMCNK+N+AEGCKFGDKC
Sbjct: 61  PGGYNAVAQMMNLAPAVPAASRNMAGPPTIQNGST--PAVKTRMCNKYNTAEGCKFGDKC 120

Query: 121 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPPGPAASFGASATAKISIDASL 180
           +FAH +WELG+P  PSH++PR M G + GRMG RM+L PPGPAASFGASATAKIS+DASL
Sbjct: 121 HFAHNDWELGKPIAPSHEDPRAM-GPIPGRMGSRMELAPPGPAASFGASATAKISVDASL 180

Query: 181 AGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIITX 240
           AGAIIGKGG+NSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQI EASAMVR+LI+T 
Sbjct: 181 AGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQIKEASAMVRQLIVT- 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
                                 NYKTKLC+NF KGSCTFGERCHFAHGAAELRKSGV
Sbjct: 241 -VSVSGPPKTHGMPGAAAPPGSNYKTKLCENFTKGSCTFGERCHFAHGAAELRKSGV 291

[Close]

BLAST of Carg25009 vs. TrEMBL
Match: tr|A0A061EXS8|A0A061EXS8_THECC (KH domain-containing protein / zinc finger family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_024899 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.2e-115
Identity = 221/298 (74.16%), Postives = 241/298 (80.87%), Query Frame = 0


Query: 1   MDMRKRGRPEAAFNSNGSFKKHKQELESLSTVGGKSKPCTKFFSTAGCPFGESCHFLHYV 60
           MD RKRGRPEA FNSNG FKK K E+ES + VG KSKPCTKFFSTAGCPFGESCHFLHYV
Sbjct: 1   MDTRKRGRPEAGFNSNGGFKKTKPEMES-TGVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  PGGYNAVAQMMNLAPVGSQPSRNMAAPPVSNGGSSAPSQIKTRMCNKFNSAEGCKFGDKC 120
           PGGYNAVAQ+MNLAP     SRNMAAPP    GSSA   +KTR+CNKF+SAEGCKFGDKC
Sbjct: 61  PGGYNAVAQIMNLAPAVPPASRNMAAPPPIPNGSSA---VKTRLCNKFSSAEGCKFGDKC 120

Query: 121 NFAHGEWELGRPTPPSHDNPRGMGGHMVGRMGGRMDLPPP-GPAASFGASATAKISIDAS 180
           +FAHG+WELG+P  PSHD+PRGM   + GRMG RM+ PPP GPAASFGASATAKIS+DAS
Sbjct: 121 HFAHGDWELGKPIAPSHDDPRGM-ATIAGRMGSRMEPPPPSGPAASFGASATAKISVDAS 180

Query: 181 LAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQINEASAMVRELIIT 240
           LAGAIIGKGG++SKQICR+TGAKLSIR+HESDP LRNIELEG+FEQI +ASAMVREL I+
Sbjct: 181 LAGAIIGKGGVHSKQICRRTGAKLSIREHESDPTLRNIELEGSFEQIKQASAMVREL-IS 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXNYKTKLCDNFAKGSCTFGERCHFAHGAAELRKSGV 298
                                  NYKTKLCDNFAKGSCTFGERCHFAHG AELRKS V
Sbjct: 241 SLGPVSGPAKTPGVPGGQGHPGSNYKTKLCDNFAKGSCTFGERCHFAHGTAELRKSAV 292

The following BLAST results are available for this feature:

BLAST of Carg25009 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928715.1	1.6e-153	100.00	zinc finger CCCH domain-containing protein 14-like [Cucurbita moschata]	[more]
XP_023545090.1	3.6e-153	91.92	zinc finger CCCH domain-containing protein 31-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967865.1	2.6e-151	91.61	zinc finger CCCH domain-containing protein 31 [Cucurbita maxima]	[more]
XP_008442098.1	4.5e-143	86.23	PREDICTED: zinc finger CCCH domain-containing protein 36-like [Cucumis melo]	[more]
XP_004146386.1	4.9e-142	85.29	PREDICTED: zinc finger CCCH domain-containing protein 31-like [Cucumis sativus] ...	[more]

BLAST of Carg25009 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06770.1	7.0e-74	54.00	KH domain-containing protein / zinc finger (CCCH type) family protein	[more]
AT3G12130.1	4.7e-70	55.23	KH domain-containing protein / zinc finger (CCCH type) family protein	[more]
AT3G19360.1	3.5e-09	35.34	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	1.9e-07	34.88	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25970.1	1.4e-05	28.40	KH domain-containing protein	[more]

BLAST of Carg25009 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7F8R0\|C3H14_ORYSJ	7.9e-83	57.48	Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q7XPK1\|C3H31_ORYSJ	1.3e-82	61.84	Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q69XQ3\|C3H44_ORYSJ	3.6e-75	54.21	Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q9FG30\|C3H52_ARATH	1.3e-72	54.00	Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9C7C3\|C3H36_ARATH	8.5e-69	55.23	Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg25009 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4W9\|A0A1S3B4W9_CUCME	3.0e-143	86.23	zinc finger CCCH domain-containing protein 36-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KZ79\|A0A0A0KZ79_CUCSA	3.3e-142	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507380 PE=4 SV=1	[more]
tr\|A0A2I4HVP9\|A0A2I4HVP9_9ROSI	6.6e-119	75.42	zinc finger CCCH domain-containing protein 14-like OS=Juglans regia OX=51240 GN=...	[more]
tr\|A0A2I4DFQ7\|A0A2I4DFQ7_9ROSI	9.6e-118	74.07	zinc finger CCCH domain-containing protein 14-like OS=Juglans regia OX=51240 GN=...	[more]
tr\|A0A061EXS8\|A0A061EXS8_THECC	1.2e-115	74.16	KH domain-containing protein / zinc finger family protein isoform 1 OS=Theobroma...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036855	Znf_CCCH_sf
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1
IPR000571	Znf_CCCH
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25009-RA	Carg25009-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 168..238 e-value: 7.3E-13 score: 58.7
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 99..126 e-value: 0.02 score: 24.1 coord: 35..60 e-value: 1.1 score: 16.1 coord: 263..289 e-value: 6.0E-8 score: 42.4
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 35..58 e-value: 2.8E-4 score: 20.6 coord: 101..126 e-value: 1.5E-5 score: 24.6 coord: 264..288 e-value: 1.2E-9 score: 37.8
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 263..290 score: 16.558
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 33..61 score: 12.38
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 99..127 score: 13.516
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 94..131 e-value: 4.0E-11 score: 44.2 coord: 262..295 e-value: 4.2E-14 score: 53.7
None	No IPR available	PANTHER	PTHR10288:SF5	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 36-RELATED	coord: 1..296
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 1..296
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 169..233 score: 14.739
None	No IPR available	CDD	cd00105	KH-I	coord: 171..233 e-value: 2.20369E-15 score: 67.9703
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 172..235 e-value: 1.5E-12 score: 47.1
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 163..261 e-value: 7.5E-15 score: 56.7
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 158..240
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 34..59
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 98..130
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 262..293

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25009	MELO3C008908	Melon (DHL92) v3.5.1	carmeB0529
Carg25009	CmaCh03G000290	Cucurbita maxima (Rimu)	carcmaB0735
Carg25009	CmoCh03G000290	Cucurbita moschata (Rifu)	carcmoB0712
Carg25009	Cp4.1LG10g12380	Cucurbita pepo (Zucchini)	carcpeB0743
Carg25009	CsGy4G018890	Cucumber (Gy14) v2	carcgybB0532
Carg25009	MELO3C008908.2	Melon (DHL92) v3.6.1	carmedB0534
Carg25009	CsaV3_4G030470	Cucumber (Chinese Long) v3	carcucB0563

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None