Carg25006 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25006
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_187 : 320345 .. 321868 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATAGAAATCTCCATGGCTGTAAGCTCAAATCTCCTCTCCCTTCAGCCATTTCCTCCCTCCGCTATCTCTGTTCTCTTCTTCCCCAAATCGAAGCTTCAAGAGATGCCGATTTGGTTTCCCAAGTCCTCGTCCACCACCACAACCCCTTCCACGCCATGGAATCCTCCCTCCAGCTCCACTCAATCTCCTTCTCCTCCCACCTCCTCGATCAAACCCTCCTCCGCCTCACCCACCACTCCAAAATCGCCCTCTCCCTCTTCCACTACGCCAAATCCCTCCCGTTCAACCCCCTCTCCACTTCCTCCTACAACATACTCATCGACATCCTCGCCAAAGTTCGCCAGTTCGACGCCGCCTGGCATCTCATCCTCCAAATGGATCACAAGGGTACCGACACTTTTCTCTTGCTGATTCGCCGCTTGATTTCTGCTGGCCTCACTCGCCAGGCCGTTCGAGCTTTTGATGACATCGAGGGGCTTACTGGAAACAAGGTACGAACCGATGAATTTTGCTATTTATTGGATACCCTTTGTAAGTATGGCTATGTGAAAGTTGCGGCGGAGGTTTTTAACAAGAGGAAGGCGGAGTTTCATGTTGATGTCAAGATTTATACGGTTTTGATATATGGGTGGTGTAAGATTGGACGATTTGAGATGGCGGAGAGGTTTTTGAAGGATATGATCGGGCGTGGGATTGAACCGAATGTGGTTACTTATAATGTTTTGTTGAATGGGGTTTGCAGGAGGGCGAGTTTGCATCCGGAGGGGAGGTTTGAGCGGACAATTAGGACTGCAGAGAAGGTGTTCGATGAAATGCGTCAGAGAGGGATTGATCCTGATGTGACCAGTTTCTCTATTGTGCTTCATGTGTATAGCCGTGCCCACAAGCCGGAGCTATCCCTTGATAAATTGAAGCAGATGAAAGAGCTTGGGATCTCCCCGACCGTCGCTACCTATACTTCGGTGATCAAATGCCTCTGTTCTTGTGGGAGACTCGAGGAGGCCGAAAACTTGGTAGGAGAAATGGTGAGAAATGGAATCTCTCCATCCCCTGCAACTTATAATTGTTTCTTCAAAGAGTACAGAGGTAGAAAGGATGGGGCAGGTGCTTTGAGATTGTACAAGAAGATGAGGGAGGATTGTCTATGTGCTGCTCCTAGTTTGCATACCTATAACATATTACTAGGCTTGTTTCTAAACCTTGACAAGAAAGAGACTCTGAAAGAGGTGTGGAATGATATGAAGGAGAGCGGGATCGGGCCGGATTTGGATTCGTATACGACGATGATCCACGGGTTGTGCGAGAAGCAGAGATGGAGAGAGGCCTGTCAATTTTTTGTTGAGATGATTGAAAGGGGGTTTCTTCCCCAGAAGGTGACCTTTGAGATGCTTTACAGAGGGTTGATACAGTCTGATATGTTGAGAACTTGGAGGAGATTGAAGAAGAAACTGGAAGAAGAGTCTATAACTTATGCCTCTGAGTTCAAAAACTATCACATTAAGCCTTACAGGAGATGA

mRNA sequence

ATGGCGTATAGAAATCTCCATGGCTGTAAGCTCAAATCTCCTCTCCCTTCAGCCATTTCCTCCCTCCGCTATCTCTGTTCTCTTCTTCCCCAAATCGAAGCTTCAAGAGATGCCGATTTGGTTTCCCAAGTCCTCGTCCACCACCACAACCCCTTCCACGCCATGGAATCCTCCCTCCAGCTCCACTCAATCTCCTTCTCCTCCCACCTCCTCGATCAAACCCTCCTCCGCCTCACCCACCACTCCAAAATCGCCCTCTCCCTCTTCCACTACGCCAAATCCCTCCCGTTCAACCCCCTCTCCACTTCCTCCTACAACATACTCATCGACATCCTCGCCAAAGTTCGCCAGTTCGACGCCGCCTGGCATCTCATCCTCCAAATGGATCACAAGGGTACCGACACTTTTCTCTTGCTGATTCGCCGCTTGATTTCTGCTGGCCTCACTCGCCAGGCCGTTCGAGCTTTTGATGACATCGAGGGGCTTACTGGAAACAAGGTACGAACCGATGAATTTTGCTATTTATTGGATACCCTTTGTAAGTATGGCTATGTGAAAGTTGCGGCGGAGGTTTTTAACAAGAGGAAGGCGGAGTTTCATGTTGATGTCAAGATTTATACGGTTTTGATATATGGGTGGTGTAAGATTGGACGATTTGAGATGGCGGAGAGGTTTTTGAAGGATATGATCGGGCGTGGGATTGAACCGAATGTGGTTACTTATAATGTTTTGTTGAATGGGGTTTGCAGGAGGGCGAGTTTGCATCCGGAGGGGAGGTTTGAGCGGACAATTAGGACTGCAGAGAAGGTGTTCGATGAAATGCGTCAGAGAGGGATTGATCCTGATGTGACCAGTTTCTCTATTGTGCTTCATGTGTATAGCCGTGCCCACAAGCCGGAGCTATCCCTTGATAAATTGAAGCAGATGAAAGAGCTTGGGATCTCCCCGACCGTCGCTACCTATACTTCGGTGATCAAATGCCTCTGTTCTTGTGGGAGACTCGAGGAGGCCGAAAACTTGGTAGGAGAAATGGTGAGAAATGGAATCTCTCCATCCCCTGCAACTTATAATTGTTTCTTCAAAGAGTACAGAGGTAGAAAGGATGGGGCAGGTGCTTTGAGATTGTACAAGAAGATGAGGGAGGATTGTCTATGTGCTGCTCCTAGTTTGCATACCTATAACATATTACTAGGCTTGTTTCTAAACCTTGACAAGAAAGAGACTCTGAAAGAGGTGTGGAATGATATGAAGGAGAGCGGGATCGGGCCGGATTTGGATTCGTATACGACGATGATCCACGGGTTGTGCGAGAAGCAGAGATGGAGAGAGGCCTGTCAATTTTTTGTTGAGATGATTGAAAGGGGGTTTCTTCCCCAGAAGGTGACCTTTGAGATGCTTTACAGAGGGTTGATACAGTCTGATATGTTGAGAACTTGGAGGAGATTGAAGAAGAAACTGGAAGAAGAGTCTATAACTTATGCCTCTGAGTTCAAAAACTATCACATTAAGCCTTACAGGAGATGA

Coding sequence (CDS)

ATGGCGTATAGAAATCTCCATGGCTGTAAGCTCAAATCTCCTCTCCCTTCAGCCATTTCCTCCCTCCGCTATCTCTGTTCTCTTCTTCCCCAAATCGAAGCTTCAAGAGATGCCGATTTGGTTTCCCAAGTCCTCGTCCACCACCACAACCCCTTCCACGCCATGGAATCCTCCCTCCAGCTCCACTCAATCTCCTTCTCCTCCCACCTCCTCGATCAAACCCTCCTCCGCCTCACCCACCACTCCAAAATCGCCCTCTCCCTCTTCCACTACGCCAAATCCCTCCCGTTCAACCCCCTCTCCACTTCCTCCTACAACATACTCATCGACATCCTCGCCAAAGTTCGCCAGTTCGACGCCGCCTGGCATCTCATCCTCCAAATGGATCACAAGGGTACCGACACTTTTCTCTTGCTGATTCGCCGCTTGATTTCTGCTGGCCTCACTCGCCAGGCCGTTCGAGCTTTTGATGACATCGAGGGGCTTACTGGAAACAAGGTACGAACCGATGAATTTTGCTATTTATTGGATACCCTTTGTAAGTATGGCTATGTGAAAGTTGCGGCGGAGGTTTTTAACAAGAGGAAGGCGGAGTTTCATGTTGATGTCAAGATTTATACGGTTTTGATATATGGGTGGTGTAAGATTGGACGATTTGAGATGGCGGAGAGGTTTTTGAAGGATATGATCGGGCGTGGGATTGAACCGAATGTGGTTACTTATAATGTTTTGTTGAATGGGGTTTGCAGGAGGGCGAGTTTGCATCCGGAGGGGAGGTTTGAGCGGACAATTAGGACTGCAGAGAAGGTGTTCGATGAAATGCGTCAGAGAGGGATTGATCCTGATGTGACCAGTTTCTCTATTGTGCTTCATGTGTATAGCCGTGCCCACAAGCCGGAGCTATCCCTTGATAAATTGAAGCAGATGAAAGAGCTTGGGATCTCCCCGACCGTCGCTACCTATACTTCGGTGATCAAATGCCTCTGTTCTTGTGGGAGACTCGAGGAGGCCGAAAACTTGGTAGGAGAAATGGTGAGAAATGGAATCTCTCCATCCCCTGCAACTTATAATTGTTTCTTCAAAGAGTACAGAGGTAGAAAGGATGGGGCAGGTGCTTTGAGATTGTACAAGAAGATGAGGGAGGATTGTCTATGTGCTGCTCCTAGTTTGCATACCTATAACATATTACTAGGCTTGTTTCTAAACCTTGACAAGAAAGAGACTCTGAAAGAGGTGTGGAATGATATGAAGGAGAGCGGGATCGGGCCGGATTTGGATTCGTATACGACGATGATCCACGGGTTGTGCGAGAAGCAGAGATGGAGAGAGGCCTGTCAATTTTTTGTTGAGATGATTGAAAGGGGGTTTCTTCCCCAGAAGGTGACCTTTGAGATGCTTTACAGAGGGTTGATACAGTCTGATATGTTGAGAACTTGGAGGAGATTGAAGAAGAAACTGGAAGAAGAGTCTATAACTTATGCCTCTGAGTTCAAAAACTATCACATTAAGCCTTACAGGAGATGA

Protein sequence

MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCRRASLHPEGRFERTIRTAEKVFDEMRQRGIDPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCLCSCGRLEEAENLVGEMVRNGISPSPATYNCFFKEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESGIGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESITYASEFKNYHIKPYRR

Homology

[Close]

BLAST of Carg25006 vs. NCBI nr
Match: XP_022928707.1 (pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucurbita moschata] >XP_022928709.1 pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 838.2 bits (2164), Expect = 1.5e-239
Identity = 506/507 (99.80%), Postives = 507/507 (100.00%), Query Frame = 0


Query: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60
           MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ
Sbjct: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60

Query: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120
           LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA
Sbjct: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120

Query: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180
           AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC
Sbjct: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180

Query: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240
           KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT
Sbjct: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240

Query: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300
           YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE
Sbjct: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300

Query: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420
           KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG
Sbjct: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420

Query: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480
           IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR
Sbjct: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480

Query: 481 RLKKKLEEESITYASEFKNYHIKPYRR 508
           RLKKKLEEESITYASEFKNYH+KPYRR
Sbjct: 481 RLKKKLEEESITYASEFKNYHMKPYRR 507

[Close]

BLAST of Carg25006 vs. NCBI nr
Match: XP_023545087.1 (pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 826.2 bits (2133), Expect = 5.9e-236
Identity = 502/507 (99.01%), Postives = 504/507 (99.41%), Query Frame = 0


Query: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60
           MAYRNLHGCKLKSPLPSAISSLR LCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ
Sbjct: 1   MAYRNLHGCKLKSPLPSAISSLRSLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60

Query: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120
           LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA
Sbjct: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120

Query: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180
           AWHLILQMDHKGT+TFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC
Sbjct: 121 AWHLILQMDHKGTETFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180

Query: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240
           KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT
Sbjct: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240

Query: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300
           YNVLLNGVCRRASLHPEGRFE+TIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE
Sbjct: 241 YNVLLNGVCRRASLHPEGRFEQTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300

Query: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420
           KEYRGRKDGAGALRLYKKMREDCL AAPSLHTYNILL LFLNLDKKETLKEVWNDMKESG
Sbjct: 361 KEYRGRKDGAGALRLYKKMREDCLYAAPSLHTYNILLSLFLNLDKKETLKEVWNDMKESG 420

Query: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480
           IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR
Sbjct: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480

Query: 481 RLKKKLEEESITYASEFKNYHIKPYRR 508
           RLKKKLEEESITYASEFKNYHIKPYRR
Sbjct: 481 RLKKKLEEESITYASEFKNYHIKPYRR 507

[Close]

BLAST of Carg25006 vs. NCBI nr
Match: XP_022967779.1 (pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucurbita maxima] >XP_022967780.1 pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 815.1 bits (2104), Expect = 1.4e-232
Identity = 494/507 (97.44%), Postives = 495/507 (97.63%), Query Frame = 0


Query: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60
           MAYRNLHGCKLK PL S ISSLR L SLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ
Sbjct: 1   MAYRNLHGCKLKFPLSSTISSLRSLSSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60

Query: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120
           LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA
Sbjct: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120

Query: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180
           AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC
Sbjct: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180

Query: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240
           KYGYVKVAAEVFNKRKAEF VDVKIYTVLIYGWCKIGRFEM ERFLKDMIGRGIEPNVVT
Sbjct: 181 KYGYVKVAAEVFNKRKAEFGVDVKIYTVLIYGWCKIGRFEMGERFLKDMIGRGIEPNVVT 240

Query: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300
           YNVLLNGVCRRASLHPEGRFE+TIRT  XXXXXXXXXXXXXXXXXXXXXX VYSRAHKPE
Sbjct: 241 YNVLLNGVCRRASLHPEGRFEQTIRTAEXXXXXXXXXXXXXXXXXXXXXXHVYSRAHKPE 300

Query: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           LS DKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 LSFDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420
           KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG
Sbjct: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420

Query: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480
           IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR
Sbjct: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480

Query: 481 RLKKKLEEESITYASEFKNYHIKPYRR 508
           RLKKKLEEESITY SEFKNYHIKPYRR
Sbjct: 481 RLKKKLEEESITYGSEFKNYHIKPYRR 507

[Close]

BLAST of Carg25006 vs. NCBI nr
Match: XP_004146407.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial [Cucumis sativus] >KGN54803.1 hypothetical protein Csa_4G506840 [Cucumis sativus])

HSP 1 Score: 742.7 bits (1916), Expect = 8.5e-211
Identity = 457/507 (90.14%), Postives = 477/507 (94.08%), Query Frame = 0


Query: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60
           MA+  LH   L SPLPS ISS+R+L SLLPQI+ S+DADLVSQ+L+HHHNPFH+MESSLQ
Sbjct: 1   MAFTKLHSSSLISPLPSIISSIRFLSSLLPQIQPSKDADLVSQILLHHHNPFHSMESSLQ 60

Query: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120
           LHSISFSSHLLDQTLLRLTHHSKIALS F YA SLP NP+ST+SYNIL+DILAKVRQFDA
Sbjct: 61  LHSISFSSHLLDQTLLRLTHHSKIALSFFDYANSLPSNPISTTSYNILLDILAKVRQFDA 120

Query: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180
           AWHLILQMDHKGTDTFLLLIRRLIS+G TRQA+RAFDDIEGLTGNKV  D+FCYLLD LC
Sbjct: 121 AWHLILQMDHKGTDTFLLLIRRLISSGRTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLC 180

Query: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240
           KYGYVKVA EVFNKRK EF VDVKIYT+LIYGWCKIGRFEMAERFLKDM+ RGIEPNVVT
Sbjct: 181 KYGYVKVAVEVFNKRKEEFGVDVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVT 240

Query: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300
           YNVLLNGVCRRASLHPEGRFE+TIR XXXXXXXXXXXXXXXXXXXXXXXXX YSRAHKPE
Sbjct: 241 YNVLLNGVCRRASLHPEGRFEKTIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRAHKPE 300

Query: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420
           KEYRGRKDGAGALRLYKKMREDCLC APSLHTYNILL LFLNLDKKETLKE+WNDMKESG
Sbjct: 361 KEYRGRKDGAGALRLYKKMREDCLC-APSLHTYNILLALFLNLDKKETLKELWNDMKESG 420

Query: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480
           +GPDLDSYTT+IHGLCEKQRW EACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR
Sbjct: 421 VGPDLDSYTTIIHGLCEKQRWSEACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480

Query: 481 RLKKKLEEESITYASEFKNYHIKPYRR 508
           RLKKKLEEES TY SE KNYHIKPY R
Sbjct: 481 RLKKKLEEESKTYGSELKNYHIKPYMR 506

[Close]

BLAST of Carg25006 vs. NCBI nr
Match: XP_008442112.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucumis melo])

HSP 1 Score: 736.9 bits (1901), Expect = 4.7e-209
Identity = 454/507 (89.55%), Postives = 474/507 (93.49%), Query Frame = 0


Query: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60
           MA+  LH   L SPLPS IS +R+L SLLPQI+ S DADLVSQ+L+HHHNPFH+MESSLQ
Sbjct: 1   MAFAKLHCSTLISPLPSTISFIRFLSSLLPQIQPSEDADLVSQILLHHHNPFHSMESSLQ 60

Query: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120
           LHSISFSSHLLDQTLLRLTHHSKIALS F YA +LP NP+ST+SYNIL+DILAKVRQFDA
Sbjct: 61  LHSISFSSHLLDQTLLRLTHHSKIALSFFDYANTLPSNPISTTSYNILLDILAKVRQFDA 120

Query: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180
           AWHLILQMDHKGTDTFLLLIRRLIS+G TRQA+RAFDDIEGLTGNKV  D+FCYLLD LC
Sbjct: 121 AWHLILQMDHKGTDTFLLLIRRLISSGRTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLC 180

Query: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240
           KYGYVKVA EVFNKRK EF VDVKIYTVLIYGWCKIGRFEMAERFLKDM+ RGIEPNVVT
Sbjct: 181 KYGYVKVAVEVFNKRKEEFGVDVKIYTVLIYGWCKIGRFEMAERFLKDMVERGIEPNVVT 240

Query: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300
           YNVLLNGVCRRASLHPEGRFE+TIR XXXXXXXXXXXXXXXXXXXXXXXXX YSRAHKPE
Sbjct: 241 YNVLLNGVCRRASLHPEGRFEKTIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRAHKPE 300

Query: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 360

Query: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420
           KEYRGRKDGAGALRLYK+MREDCLC APSLHTYNILL LFLNLDKK+TLKE+WNDMK SG
Sbjct: 361 KEYRGRKDGAGALRLYKRMREDCLC-APSLHTYNILLALFLNLDKKQTLKELWNDMKASG 420

Query: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480
           +GPDLDSYTTMIHGLCEKQRW EACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR
Sbjct: 421 VGPDLDSYTTMIHGLCEKQRWSEACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480

Query: 481 RLKKKLEEESITYASEFKNYHIKPYRR 508
           RLKKKLEEES TY SEFKNYHIKPY R
Sbjct: 481 RLKKKLEEESKTYGSEFKNYHIKPYMR 506

[Close]

BLAST of Carg25006 vs. TAIR10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 7.6e-20
Identity = 60/210 (28.57%), Postives = 105/210 (50.00%), Query Frame = 0


Query: 33  EASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSLFHYA 92
           E + D +   ++L   H+    +E +L    +     L+++ L R      +    F +A
Sbjct: 78  EFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWA 137

Query: 93  KSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKG-----TDTFLLLIRRLISAG 152
              P    S   Y  ++ IL+K+RQF A W LI +M  +       + F++L++R  SA 
Sbjct: 138 AKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASAD 197

Query: 153 LTRQAVRAFDDIEGLTGNKVRTDEFCY--LLDTLCKYGYVKVAAEVFNKRKAEFHVDVKI 212
           + ++A+   D++          DE+ +  LLD LCK+G VK AA++F   +  F V+++ 
Sbjct: 198 MVKKAIEVLDEMPKF---GFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRY 257

Query: 213 YTVLIYGWCKIGRFEMAERFLKDMIGRGIE 236
           +T L+YGWC++G+   A+  L  M   G E
Sbjct: 258 FTSLLYGWCRVGKMMEAKYVLVQMNEAGFE 284

HSP 2 Score: 55.1 bits (131), Expect = 1.5e-07
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 392 TYNILLGLFLNLDKKETLKEVWNDMKESGIGP-DLDSYTTMIHGLCEKQRWREACQFFVE 451
           T  +LL   L   K E  K+VW+ +   G    ++ S+T  IH L  K   +EAC + +E
Sbjct: 501 TLKLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIE 560

Query: 452 MIERGFLPQKVTFEMLYRGL 471
           MIE  F+PQ  TF  L +GL
Sbjct: 561 MIEMDFMPQPDTFAKLMKGL 580

[Close]

BLAST of Carg25006 vs. TAIR10
Match: AT1G20300.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-18
Identity = 55/152 (36.18%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 85  ALSLFHYAKSL-PFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGT----DTFLLL 144
           +L+ F++A S   ++  S   YN +ID+  KVRQFD AWHLI  M  +      +TF +L
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 145 IRRLISAGLTRQAVRAFDDIE--GLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKA 204
           IRR + AGL  +AV  F+ +E  G   +K+    F  ++  L +      A   F+  K 
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKI---AFSIVISNLSRKRRASEAQSFFDSLKD 252

Query: 205 EFHVDVKIYTVLIYGWCKIGRFEMAERFLKDM 230
            F  DV +YT L+ GWC+ G    AE+  K+M
Sbjct: 253 RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281

[Close]

BLAST of Carg25006 vs. TAIR10
Match: AT3G61360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 7.1e-18
Identity = 128/492 (26.02%), Postives = 213/492 (43.29%), Query Frame = 0


Query: 10  KLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQLH--SISFS 69
           +L +P+ S+ SSL        +IE       ++ ++  H  P H ++  L  H    S S
Sbjct: 12  RLLAPVLSSSSSLSSTSINRTEIER------ITIIINGHPFPNHPIQPILAKHIPLSSLS 71

Query: 70  SHLLDQTLLRL--THHSKI-ALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHL 129
              + + L RL   H + + AL  F Y+     +  ++ S+   + ILA++R FD AW L
Sbjct: 72  PEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSSPTSDSFEKTLHILARMRYFDQAWAL 131

Query: 130 ILQM--DHKGTDTF---LLLIRRLISAGLTRQAVRAFDDIE-GLTGNKVRTDEFCYLLDT 189
           + ++  D+    +F    +L+ ++   G   + + AF  +E  +   K   DEF  LL  
Sbjct: 132 MAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDEFNILLRA 191

Query: 190 LCKYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNV 249
            C    +K A  +F K  + F+ DVK   +L+ G+ + G     E F  +M+ RG +PN 
Sbjct: 192 FCTEREMKEARSIFEKLHSRFNPDVKTMNILLLGFKEAGDVTATELFYHEMVKRGFKPNS 251

Query: 250 VTYNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHK 309
           VTY + ++G C++ +      F   +R                            ++   
Sbjct: 252 VTYGIRIDGFCKKRN------FGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKA 311

Query: 310 PEL--SLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
            +L   + K                              XXXXXXXXXXXXXXXXXXXXX
Sbjct: 312 RQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMXXXXXXXXXXXXXXXXXXXXX 371

Query: 370 XXXXKEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDM 429
           XX  KE+       G    Y+KM+E  L   P   T  +L+ LF +  +     ++W  M
Sbjct: 372 XXKSKEFGFN----GVCEYYQKMKERSL--VPKTPTIVMLMKLFCHNGEVNLGLDLWKYM 431

Query: 430 KESGIGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDML 489
            E G  P   +   +   LC ++R  +A +   + +ERG    +  + ML   L  ++ L
Sbjct: 432 LEKGYCPHGHALELLTTALCARRRANDAFECSWQTVERGRCVSEPVYRMLETSLSSNNEL 485

[Close]

BLAST of Carg25006 vs. TAIR10
Match: AT1G02420.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 9.3e-18
Identity = 66/230 (28.70%), Postives = 117/230 (50.87%), Query Frame = 0


Query: 29  LPQIEASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTL--LRLTHHSKI-A 88
           +P  E   DA+ V + +++  N    ++ SL    I  S  L+D+ L  +R +H + I  
Sbjct: 33  VPVEEEGDDAETVFR-MINGSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQT 92

Query: 89  LSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGTD-----TFLLLI 148
           L  + YA ++     S+ S + ++ IL + R+FD  W L+++   K        T  +++
Sbjct: 93  LEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVL 152

Query: 149 RRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKAEFH 208
            R+      RQ V +F   + L  +   T  F  LL TLC+   +  A  V++  K +F 
Sbjct: 153 GRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQ 212

Query: 209 VDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCR 251
            D++ + +L+ GW      E AE F ++M G+G++P+VVTYN L++  C+
Sbjct: 213 PDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCK 258

[Close]

BLAST of Carg25006 vs. TAIR10
Match: AT3G15200.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-17
Identity = 149/372 (40.05%), Postives = 202/372 (54.30%), Query Frame = 0


Query: 101 STSSYNILIDILAKVRQFDAAWHLILQMDHK----GTDTFLLLIRRLISAGLTRQAVRAF 160
           S+  YN ++D+L K+R+F+    +  +M  +       T+ +L+ R  +A    +AV  F
Sbjct: 142 SSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVF 201

Query: 161 DDIE--GLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWC 220
           +  +  G+  + V    F  LL  LC+Y +V+ A  +F  R+ EF  D+K   +++ GWC
Sbjct: 202 ERRKEFGIDDDLV---AFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNMILNGWC 261

Query: 221 KIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXX 280
            +G    A+RF KD+I     P+VV                           XXXXXXXX
Sbjct: 262 VLGNVHEAKRFWKDIIASKCRPDVV--------XXXXXXXXXXXXXXXXXXXXXXXXXXX 321

Query: 281 XXXXXXXXXXXXXXXXXVYSRAHKPELSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXX 340
           XXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 322 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 381

Query: 341 XXXXXXXXXXXXXXXXXXXXXXXXXXKEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYN 400
           XXXXXXXXXXXX              K  +  KD    L    K +    C   S   YN
Sbjct: 382 XXXXXXXXXXXXGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNK----CEMTS-DLYN 441

Query: 401 ILLGLFLNLDKKETLKEVWNDMKESGIGPDLDSYTTMIHGLCEKQRWREACQFFVEMIER 460
           ++  L++  DK+E ++E+W++M+ SG+GPD  +YT  IHGL  K +  EA  +F EM+ +
Sbjct: 442 LMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSK 496

Query: 461 GFLPQKVTFEML 467
           G +P+  T EML
Sbjct: 502 GMVPEPRT-EML 496

[Close]

BLAST of Carg25006 vs. Swiss-Prot
Match: sp|Q0WP85|PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g13420 PE=2 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 3.4e-118
Identity = 304/480 (63.33%), Postives = 364/480 (75.83%), Query Frame = 0


Query: 29  LPQIEASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSL 88
           LP++E S DA+L+SQ+L+ +HNPFH MESSLQL+ IS + +L+ QTLLRL H+SKIALS 
Sbjct: 32  LPKLEPSSDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSF 91

Query: 89  FHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGTDTFLLLIRRLISAGL 148
           F Y +SLP    + +S+N++IDIL +VRQFD    LI++MD    +TFL+L++RLI+AGL
Sbjct: 92  FQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQTSPETFLILVKRLIAAGL 151

Query: 149 TRQAVRAFDDIE-GLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKAEFHVDVKIYT 208
           TRQAVRAFDD    L   + R  EF +LLDTLCKYGY K+A  VFN+RK EF  D K+YT
Sbjct: 152 TRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYT 211

Query: 209 VLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCRRASLHPEGRFERTIRTX 268
           +LI GWCK+ R +MAE+FL +MI  GIEPNVVTYNVLLNG+CR ASLHPE RFER    X
Sbjct: 212 ILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERXXXXX 271

Query: 269 XXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPELSLDKLXXXXXXXXXXXXXXXXXXXXX 328
           XXXXXXXXXXXXXXXXXXXXXXXX  SRAHK EL+LDK+    XXXXXXXXXXXXXXXXX
Sbjct: 272 XXXXXXXXXXXXXXXXXXXXXXXXXXSRAHKAELTLDKM--KLXXXXXXXXXXXXXXXXX 331

Query: 329 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEYRGRKDGAGALRLYKKMREDCLCAA 388
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           
Sbjct: 332 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 391

Query: 389 PSLHTYNILLGLFLNLDKKETLKEVWNDMKESGIGPDLDSYTTMIHGLCEKQRWREACQF 448
                        +NL K ET+KE+W+D+K S  GPDLDSYT+++HGLC K++W+EAC +
Sbjct: 392 XXXXXXXXXXXXXINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGY 451

Query: 449 FVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESITYASEFKNYHIKPYRR 508
           FVEMIERGFLPQK+TFE LY+GLIQS+ +RTWRRLKKKL+EESIT+ SEF+ Y  +PY+R
Sbjct: 452 FVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDEESITFGSEFQRYPFEPYKR 509

[Close]

BLAST of Carg25006 vs. Swiss-Prot
Match: sp|Q9FH87|PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-18
Identity = 60/210 (28.57%), Postives = 105/210 (50.00%), Query Frame = 0


Query: 33  EASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSLFHYA 92
           E + D +   ++L   H+    +E +L    +     L+++ L R      +    F +A
Sbjct: 78  EFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWA 137

Query: 93  KSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKG-----TDTFLLLIRRLISAG 152
              P    S   Y  ++ IL+K+RQF A W LI +M  +       + F++L++R  SA 
Sbjct: 138 AKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASAD 197

Query: 153 LTRQAVRAFDDIEGLTGNKVRTDEFCY--LLDTLCKYGYVKVAAEVFNKRKAEFHVDVKI 212
           + ++A+   D++          DE+ +  LLD LCK+G VK AA++F   +  F V+++ 
Sbjct: 198 MVKKAIEVLDEMPKF---GFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRY 257

Query: 213 YTVLIYGWCKIGRFEMAERFLKDMIGRGIE 236
           +T L+YGWC++G+   A+  L  M   G E
Sbjct: 258 FTSLLYGWCRVGKMMEAKYVLVQMNEAGFE 284

HSP 2 Score: 55.1 bits (131), Expect = 2.7e-06
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 392 TYNILLGLFLNLDKKETLKEVWNDMKESGIGP-DLDSYTTMIHGLCEKQRWREACQFFVE 451
           T  +LL   L   K E  K+VW+ +   G    ++ S+T  IH L  K   +EAC + +E
Sbjct: 501 TLKLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIE 560

Query: 452 MIERGFLPQKVTFEMLYRGL 471
           MIE  F+PQ  TF  L +GL
Sbjct: 561 MIEMDFMPQPDTFAKLMKGL 580

[Close]

BLAST of Carg25006 vs. Swiss-Prot
Match: sp|Q9LN22|PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.4e-17
Identity = 55/152 (36.18%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 85  ALSLFHYAKSL-PFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGT----DTFLLL 144
           +L+ F++A S   ++  S   YN +ID+  KVRQFD AWHLI  M  +      +TF +L
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 145 IRRLISAGLTRQAVRAFDDIE--GLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKA 204
           IRR + AGL  +AV  F+ +E  G   +K+    F  ++  L +      A   F+  K 
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKI---AFSIVISNLSRKRRASEAQSFFDSLKD 252

Query: 205 EFHVDVKIYTVLIYGWCKIGRFEMAERFLKDM 230
            F  DV +YT L+ GWC+ G    AE+  K+M
Sbjct: 253 RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281

[Close]

BLAST of Carg25006 vs. Swiss-Prot
Match: sp|Q9M2C8|PP291_ARATH (Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana OX=3702 GN=At3g61360 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-16
Identity = 128/492 (26.02%), Postives = 213/492 (43.29%), Query Frame = 0


Query: 10  KLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQLH--SISFS 69
           +L +P+ S+ SSL        +IE       ++ ++  H  P H ++  L  H    S S
Sbjct: 12  RLLAPVLSSSSSLSSTSINRTEIER------ITIIINGHPFPNHPIQPILAKHIPLSSLS 71

Query: 70  SHLLDQTLLRL--THHSKI-ALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHL 129
              + + L RL   H + + AL  F Y+     +  ++ S+   + ILA++R FD AW L
Sbjct: 72  PEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSSPTSDSFEKTLHILARMRYFDQAWAL 131

Query: 130 ILQM--DHKGTDTF---LLLIRRLISAGLTRQAVRAFDDIE-GLTGNKVRTDEFCYLLDT 189
           + ++  D+    +F    +L+ ++   G   + + AF  +E  +   K   DEF  LL  
Sbjct: 132 MAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDEFNILLRA 191

Query: 190 LCKYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNV 249
            C    +K A  +F K  + F+ DVK   +L+ G+ + G     E F  +M+ RG +PN 
Sbjct: 192 FCTEREMKEARSIFEKLHSRFNPDVKTMNILLLGFKEAGDVTATELFYHEMVKRGFKPNS 251

Query: 250 VTYNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHK 309
           VTY + ++G C++ +      F   +R                            ++   
Sbjct: 252 VTYGIRIDGFCKKRN------FGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKA 311

Query: 310 PEL--SLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
            +L   + K                              XXXXXXXXXXXXXXXXXXXXX
Sbjct: 312 RQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMXXXXXXXXXXXXXXXXXXXXX 371

Query: 370 XXXXKEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDM 429
           XX  KE+       G    Y+KM+E  L   P   T  +L+ LF +  +     ++W  M
Sbjct: 372 XXKSKEFGFN----GVCEYYQKMKERSL--VPKTPTIVMLMKLFCHNGEVNLGLDLWKYM 431

Query: 430 KESGIGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDML 489
            E G  P   +   +   LC ++R  +A +   + +ERG    +  + ML   L  ++ L
Sbjct: 432 LEKGYCPHGHALELLTTALCARRRANDAFECSWQTVERGRCVSEPVYRMLETSLSSNNEL 485

[Close]

BLAST of Carg25006 vs. Swiss-Prot
Match: sp|Q9FZ19|PPR5_ARATH (Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana OX=3702 GN=At1g02420 PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-16
Identity = 66/230 (28.70%), Postives = 117/230 (50.87%), Query Frame = 0


Query: 29  LPQIEASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTL--LRLTHHSKI-A 88
           +P  E   DA+ V + +++  N    ++ SL    I  S  L+D+ L  +R +H + I  
Sbjct: 33  VPVEEEGDDAETVFR-MINGSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQT 92

Query: 89  LSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGTD-----TFLLLI 148
           L  + YA ++     S+ S + ++ IL + R+FD  W L+++   K        T  +++
Sbjct: 93  LEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVL 152

Query: 149 RRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKAEFH 208
            R+      RQ V +F   + L  +   T  F  LL TLC+   +  A  V++  K +F 
Sbjct: 153 GRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQ 212

Query: 209 VDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCR 251
            D++ + +L+ GW      E AE F ++M G+G++P+VVTYN L++  C+
Sbjct: 213 PDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCK 258

[Close]

BLAST of Carg25006 vs. TrEMBL
Match: tr|A0A0A0KZ73|A0A0A0KZ73_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G506840 PE=4 SV=1)

HSP 1 Score: 742.7 bits (1916), Expect = 5.7e-211
Identity = 457/507 (90.14%), Postives = 477/507 (94.08%), Query Frame = 0


Query: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60
           MA+  LH   L SPLPS ISS+R+L SLLPQI+ S+DADLVSQ+L+HHHNPFH+MESSLQ
Sbjct: 1   MAFTKLHSSSLISPLPSIISSIRFLSSLLPQIQPSKDADLVSQILLHHHNPFHSMESSLQ 60

Query: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120
           LHSISFSSHLLDQTLLRLTHHSKIALS F YA SLP NP+ST+SYNIL+DILAKVRQFDA
Sbjct: 61  LHSISFSSHLLDQTLLRLTHHSKIALSFFDYANSLPSNPISTTSYNILLDILAKVRQFDA 120

Query: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180
           AWHLILQMDHKGTDTFLLLIRRLIS+G TRQA+RAFDDIEGLTGNKV  D+FCYLLD LC
Sbjct: 121 AWHLILQMDHKGTDTFLLLIRRLISSGRTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLC 180

Query: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240
           KYGYVKVA EVFNKRK EF VDVKIYT+LIYGWCKIGRFEMAERFLKDM+ RGIEPNVVT
Sbjct: 181 KYGYVKVAVEVFNKRKEEFGVDVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVT 240

Query: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300
           YNVLLNGVCRRASLHPEGRFE+TIR XXXXXXXXXXXXXXXXXXXXXXXXX YSRAHKPE
Sbjct: 241 YNVLLNGVCRRASLHPEGRFEKTIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRAHKPE 300

Query: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420
           KEYRGRKDGAGALRLYKKMREDCLC APSLHTYNILL LFLNLDKKETLKE+WNDMKESG
Sbjct: 361 KEYRGRKDGAGALRLYKKMREDCLC-APSLHTYNILLALFLNLDKKETLKELWNDMKESG 420

Query: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480
           +GPDLDSYTT+IHGLCEKQRW EACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR
Sbjct: 421 VGPDLDSYTTIIHGLCEKQRWSEACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480

Query: 481 RLKKKLEEESITYASEFKNYHIKPYRR 508
           RLKKKLEEES TY SE KNYHIKPY R
Sbjct: 481 RLKKKLEEESKTYGSELKNYHIKPYMR 506

[Close]

BLAST of Carg25006 vs. TrEMBL
Match: tr|A0A1S3B4Y0|A0A1S3B4Y0_CUCME (pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486071 PE=4 SV=1)

HSP 1 Score: 736.9 bits (1901), Expect = 3.1e-209
Identity = 454/507 (89.55%), Postives = 474/507 (93.49%), Query Frame = 0


Query: 1   MAYRNLHGCKLKSPLPSAISSLRYLCSLLPQIEASRDADLVSQVLVHHHNPFHAMESSLQ 60
           MA+  LH   L SPLPS IS +R+L SLLPQI+ S DADLVSQ+L+HHHNPFH+MESSLQ
Sbjct: 1   MAFAKLHCSTLISPLPSTISFIRFLSSLLPQIQPSEDADLVSQILLHHHNPFHSMESSLQ 60

Query: 61  LHSISFSSHLLDQTLLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDA 120
           LHSISFSSHLLDQTLLRLTHHSKIALS F YA +LP NP+ST+SYNIL+DILAKVRQFDA
Sbjct: 61  LHSISFSSHLLDQTLLRLTHHSKIALSFFDYANTLPSNPISTTSYNILLDILAKVRQFDA 120

Query: 121 AWHLILQMDHKGTDTFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLC 180
           AWHLILQMDHKGTDTFLLLIRRLIS+G TRQA+RAFDDIEGLTGNKV  D+FCYLLD LC
Sbjct: 121 AWHLILQMDHKGTDTFLLLIRRLISSGRTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLC 180

Query: 181 KYGYVKVAAEVFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVT 240
           KYGYVKVA EVFNKRK EF VDVKIYTVLIYGWCKIGRFEMAERFLKDM+ RGIEPNVVT
Sbjct: 181 KYGYVKVAVEVFNKRKEEFGVDVKIYTVLIYGWCKIGRFEMAERFLKDMVERGIEPNVVT 240

Query: 241 YNVLLNGVCRRASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPE 300
           YNVLLNGVCRRASLHPEGRFE+TIR XXXXXXXXXXXXXXXXXXXXXXXXX YSRAHKPE
Sbjct: 241 YNVLLNGVCRRASLHPEGRFEKTIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRAHKPE 300

Query: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 301 LSLDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 360

Query: 361 KEYRGRKDGAGALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESG 420
           KEYRGRKDGAGALRLYK+MREDCLC APSLHTYNILL LFLNLDKK+TLKE+WNDMK SG
Sbjct: 361 KEYRGRKDGAGALRLYKRMREDCLC-APSLHTYNILLALFLNLDKKQTLKELWNDMKASG 420

Query: 421 IGPDLDSYTTMIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480
           +GPDLDSYTTMIHGLCEKQRW EACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR
Sbjct: 421 VGPDLDSYTTMIHGLCEKQRWSEACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWR 480

Query: 481 RLKKKLEEESITYASEFKNYHIKPYRR 508
           RLKKKLEEES TY SEFKNYHIKPY R
Sbjct: 481 RLKKKLEEESKTYGSEFKNYHIKPYMR 506

[Close]

BLAST of Carg25006 vs. TrEMBL
Match: tr|A0A2I4F7N4|A0A2I4F7N4_9ROSI (pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108996297 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.1e-165
Identity = 371/483 (76.81%), Postives = 426/483 (88.20%), Query Frame = 0


Query: 29  LPQIEASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSL 88
           LP +E S DA+ +S++L+HH+NPFHAMESSLQLH I+ + HLL QTLLRL H SKIA +L
Sbjct: 26  LPTLEPSNDAESISKILLHHYNPFHAMESSLQLHGIALTPHLLHQTLLRLKHSSKIAFAL 85

Query: 89  FHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGTD----TFLLLIRRLI 148
           F+Y+KSLP   L+ +SY++LID++AKVRQFD AW LI++MD         TFL+LIRRLI
Sbjct: 86  FNYSKSLPSQTLTPTSYHLLIDLVAKVRQFDLAWQLIIEMDQSNLSPTPTTFLILIRRLI 145

Query: 149 SAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRKAEFHVDVK 208
           SAGLTRQA+RAFDDIEG T  K   ++FC+LLDTLCKYG+VKVA EVFNK+K  F  D K
Sbjct: 146 SAGLTRQAIRAFDDIEGFTQTKTSDEDFCFLLDTLCKYGFVKVATEVFNKKKHGFLPDTK 205

Query: 209 IYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCRRASLHPEGRFERTI 268
           +YT+LIYGWCKIGR +M E+FLKDM+GRGIEPNVVTYNV LNG+CRRASLHPE RFERTI
Sbjct: 206 MYTILIYGWCKIGRIDMGEKFLKDMMGRGIEPNVVTYNVFLNGICRRASLHPEERFERTI 265

Query: 269 RTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPELSLDKLXXXXXXXXXXXXXXXXXX 328
           R XXXXXXXXXXXXXXXXXXXXXXXXXVYSR+HKPELSLDKL  XXXXXXXXXXXXXXXX
Sbjct: 266 RNXXXXXXXXXXXXXXXXXXXXXXXXXVYSRSHKPELSLDKLALXXXXXXXXXXXXXXXX 325

Query: 329 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEYRGRKDGAGALRLYKKMREDCL 388
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEYRGRKD   AL+LYKKM+E+ L
Sbjct: 326 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEYRGRKDADSALKLYKKMKEEGL 385

Query: 389 CAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESGIGPDLDSYTTMIHGLCEKQRWREA 448
           C  PS+HTYNIL+G+FL L++  T+K++WNDM+ESG+GPDLDSYT +IHGLCEKQ+WREA
Sbjct: 386 C-TPSMHTYNILVGMFLKLNRMGTVKDIWNDMRESGVGPDLDSYTMLIHGLCEKQKWREA 445

Query: 449 CQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESITYASEFKNYHIKP 508
           CQFFVEMIERGFLP+KVTFE LY+GLIQSDMLRTWRRLKKKL+EESIT+ SEF+NYH+KP
Sbjct: 446 CQFFVEMIERGFLPRKVTFETLYKGLIQSDMLRTWRRLKKKLDEESITFGSEFQNYHLKP 505

[Close]

BLAST of Carg25006 vs. TrEMBL
Match: tr|A0A2P4HFW7|A0A2P4HFW7_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_02159 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 6.1e-165
Identity = 381/497 (76.66%), Postives = 430/497 (86.52%), Query Frame = 0


Query: 16  PSAISSLRYLCSL-LPQIEASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQT 75
           PS    LR   SL LP +E S DA+LVSQ+L+HHHNPFHAMESSLQLH I+ + HLL QT
Sbjct: 12  PSLQHQLRPFSSLNLPTLEPSNDAELVSQMLLHHHNPFHAMESSLQLHGITLTPHLLHQT 71

Query: 76  LLRLTHHSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGTD 135
           LLRL H SKIAL+LF+Y+KSLP  PL+++S++ILID+LAKVRQFD AW LI++MD     
Sbjct: 72  LLRLKHSSKIALALFNYSKSLPSPPLTSTSFHILIDLLAKVRQFDLAWQLIVEMDQLSLS 131

Query: 136 ----TFLLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLCKYGYVKVAAE 195
               TF +LIRRLISAGLTRQA+RAFDDI+G T  K  +D+FC+LLDTLCKYGYVKVA E
Sbjct: 132 PTPTTFFILIRRLISAGLTRQAIRAFDDIQGYTQTKTNSDDFCFLLDTLCKYGYVKVATE 191

Query: 196 VFNKRKAEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCR 255
           VFNK++     D K++TVLIYGWCKIGR +M ERFL DMIGRGIEPNVVTYNVLLNG+CR
Sbjct: 192 VFNKKRDGLLPDAKMFTVLIYGWCKIGRIDMGERFLNDMIGRGIEPNVVTYNVLLNGICR 251

Query: 256 RASLHPEGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPELSLDKLXXXX 315
           RASLHPEGRFERTIR XXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPELSLDKL  XX
Sbjct: 252 RASLHPEGRFERTIRNXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPELSLDKLRLXX 311

Query: 316 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEYRGRKDGA 375
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GRKD  
Sbjct: 312 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKDAD 371

Query: 376 GALRLYKKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESGIGPDLDSYTT 435
            AL+LYKKM+E+ L   PS+HTYNIL+G+FL L++   +KE+W+DMKESG+GPDLDSYT 
Sbjct: 372 SALKLYKKMKEEGL-FVPSMHTYNILVGMFLKLNRLGIVKEIWDDMKESGVGPDLDSYTM 431

Query: 436 MIHGLCEKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEES 495
           +IHGLCEKQ+WREACQFFVEMIE+GFLPQKVTFE LY+GLIQSDMLRTWRRLKKKL+EES
Sbjct: 432 LIHGLCEKQKWREACQFFVEMIEKGFLPQKVTFETLYKGLIQSDMLRTWRRLKKKLDEES 491

Query: 496 ITYASEFKNYHIKPYRR 508
           IT+ SEF+NYH+KPYRR
Sbjct: 492 ITFGSEFQNYHLKPYRR 507

[Close]

BLAST of Carg25006 vs. TrEMBL
Match: tr|A0A2N9G761|A0A2N9G761_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23274 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.6e-160
Identity = 374/491 (76.17%), Postives = 425/491 (86.56%), Query Frame = 0


Query: 22  LRYLCSL-LPQIEASRDADLVSQVLVHHHNPFHAMESSLQLHSISFSSHLLDQTLLRLTH 81
           LR   SL LP +E S DA+LVS++L+HHHNPFHAMESSLQLH I+ +  LL QTLLRL H
Sbjct: 19  LRPFSSLNLPTMEPSNDAELVSKILLHHHNPFHAMESSLQLHGITLTPQLLHQTLLRLKH 78

Query: 82  HSKIALSLFHYAKSLPFNPLSTSSYNILIDILAKVRQFDAAWHLILQMDHKGTD----TF 141
            SKIAL+LF+Y+KSLP +PL+  SY++LID+LAKV QFD AW LI++MD         TF
Sbjct: 79  SSKIALALFNYSKSLPSSPLNPISYHLLIDLLAKVHQFDLAWQLIVEMDQHSLSPTPTTF 138

Query: 142 LLLIRRLISAGLTRQAVRAFDDIEGLTGNKVRTDEFCYLLDTLCKYGYVKVAAEVFNKRK 201
            +LIRRLISAGLTRQA+RAF DIEG T  K  +D+FC+LLDTLCKYGYVKVA EVFNK++
Sbjct: 139 FILIRRLISAGLTRQAIRAFYDIEGFTQTKTHSDDFCFLLDTLCKYGYVKVATEVFNKKR 198

Query: 202 AEFHVDVKIYTVLIYGWCKIGRFEMAERFLKDMIGRGIEPNVVTYNVLLNGVCRRASLHP 261
             F  D K++T+LIYGWCKIGR +MAERFL DM+ RGIEPNVVTYNVLLNG+CRRASLHP
Sbjct: 199 DGFSPDAKMFTILIYGWCKIGRIDMAERFLNDMVRRGIEPNVVTYNVLLNGICRRASLHP 258

Query: 262 EGRFERTIRTXXXXXXXXXXXXXXXXXXXXXXXXXVYSRAHKPELSLDKLXXXXXXXXXX 321
           EGRFERTI  XXXXXXXXXXXXXXXXXXXXXXXXX YSRAHK ELSLDKLXXXXXXXXXX
Sbjct: 259 EGRFERTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRAHKSELSLDKLXXXXXXXXXX 318

Query: 322 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEYRGRKDGAGALRLY 381
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EYRGRKD   AL+LY
Sbjct: 319 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRGRKDADSALKLY 378

Query: 382 KKMREDCLCAAPSLHTYNILLGLFLNLDKKETLKEVWNDMKESGIGPDLDSYTTMIHGLC 441
           KKM+E+ L   PS+HTYNIL+G+FL L++   +K++WNDM+ESG+GPDLDSYT +IH LC
Sbjct: 379 KKMKEEGL-FVPSMHTYNILVGMFLQLNRIGIVKDIWNDMRESGVGPDLDSYTMLIHALC 438

Query: 442 EKQRWREACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESITYASE 501
           EKQ+WREACQFFVEMIE+G LPQKVTFE LY+GLIQSDMLRTWRRLKKKL+EESIT+ SE
Sbjct: 439 EKQKWREACQFFVEMIEKGILPQKVTFETLYKGLIQSDMLRTWRRLKKKLDEESITFGSE 498

Query: 502 FKNYHIKPYRR 508
           F+NYH+KPYRR
Sbjct: 499 FQNYHLKPYRR 508

The following BLAST results are available for this feature:

BLAST of Carg25006 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928707.1	1.5e-239	99.80	pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucur...	[more]
XP_023545087.1	5.9e-236	99.01	pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucur...	[more]
XP_022967779.1	1.4e-232	97.44	pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Cucur...	[more]
XP_004146407.1	8.5e-211	90.14	PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial ...	[more]
XP_008442112.1	4.7e-209	89.55	PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial-...	[more]

BLAST of Carg25006 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65820.1	7.6e-20	28.57	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G20300.1	2.4e-18	36.18	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G61360.1	7.1e-18	26.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02420.1	9.3e-18	28.70	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G15200.1	2.1e-17	40.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg25006 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0WP85\|PP150_ARATH	3.4e-118	63.33	Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidop...	[more]
sp\|Q9FH87\|PP447_ARATH	1.4e-18	28.57	Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th...	[more]
sp\|Q9LN22\|PPR54_ARATH	4.4e-17	36.18	Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidop...	[more]
sp\|Q9M2C8\|PP291_ARATH	1.3e-16	26.02	Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FZ19\|PPR5_ARATH	1.7e-16	28.70	Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis th...	[more]

BLAST of Carg25006 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ73\|A0A0A0KZ73_CUCSA	5.7e-211	90.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G506840 PE=4 SV=1	[more]
tr\|A0A1S3B4Y0\|A0A1S3B4Y0_CUCME	3.1e-209	89.55	pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like OS=Cuc...	[more]
tr\|A0A2I4F7N4\|A0A2I4F7N4_9ROSI	2.1e-165	76.81	pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like OS=Jug...	[more]
tr\|A0A2P4HFW7\|A0A2P4HFW7_QUESU	6.1e-165	76.66	Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5...	[more]
tr\|A0A2N9G761\|A0A2N9G761_FAGSY	1.6e-160	76.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23274 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25006-RA	Carg25006-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 285..314 e-value: 0.1 score: 12.8 coord: 104..132 e-value: 0.01 score: 15.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 285..318 e-value: 6.4E-4 score: 17.7 coord: 104..132 e-value: 1.4E-4 score: 19.8 coord: 320..352 e-value: 1.0E-9 score: 36.0 coord: 205..238 e-value: 2.1E-8 score: 31.8 coord: 427..458 e-value: 1.9E-9 score: 35.1 coord: 391..424 e-value: 3.8E-4 score: 18.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 388..436 e-value: 3.0E-11 score: 43.2 coord: 202..250 e-value: 6.2E-15 score: 55.0 coord: 316..362 e-value: 1.5E-12 score: 47.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 101..135 score: 9.197
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 389..423 score: 9.46
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 317..351 score: 13.187
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 202..236 score: 12.43
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 352..386 score: 7.092
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 282..316 score: 10.073
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 424..458 score: 12.978
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 168..198 score: 5.207
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 237..281 score: 8.528
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 196..252 e-value: 3.5E-15 score: 58.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 253..386 e-value: 2.3E-34 score: 121.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 387..506 e-value: 4.8E-20 score: 74.3 coord: 49..195 e-value: 9.5E-12 score: 47.1
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 23..492
None	No IPR available	PANTHER	PTHR24015:SF516	SUBFAMILY NOT NAMED	coord: 23..492

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25006	CmaCh03G000320	Cucurbita maxima (Rimu)	carcmaB0735
Carg25006	CmoCh03G000310	Cucurbita moschata (Rifu)	carcmoB0712
Carg25006	Cp4.1LG10g12370	Cucurbita pepo (Zucchini)	carcpeB0743
Carg25006	CsGy4G018940	Cucumber (Gy14) v2	carcgybB0532
Carg25006	MELO3C033379.2	Melon (DHL92) v3.6.1	carmedB0534
Carg25006	CsaV3_4G030520	Cucumber (Chinese Long) v3	carcucB0563

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25006	Melon (DHL92) v3.5.1	carmeB0529