Carg24988 (gene) Silver-seed gourd

Overview
NameCarg24988
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionactivator of 90 kDa heat shock protein ATPase homolog 1
LocationCucurbita_argyrosperma_scaffold_187 : 110100 .. 114698 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGTTTCCGAGCTTGAATATTGGTATGGATGACAAGACAAAGTTGAAACAGTTTATAAAGTTTATAAAATCTATTCGACACGGATTATCCCATTTTCAGTATAAACAGAAATTCTCATCGGTAACGTAAATGGACATTTTACTCGTCTAATAATATTTTTATTCTAATATTTTTAATAATTTATTCCATTATAATTTTAATTGTTTATAACATTTTTATTTTTATAAGCATGCCTATTTACTATTTACTTTTTACTTTTAATTGGATTCCAAAAAAAAGCTTTTTGAAATCGTACCTAACTTACAAAAGCATTGAAAAAAAAAATTAAAAAAATGAAAGAAAAACTAAACTCTTAATTTTAAAAAGCATAAATTAGAAAGAATAAAAAAAAAAAGAAAAAAAAAAGCTTGTTAGGTGCAAGAAACCAAACATGCCCACAAATTTTGGAGCCCAAATGTTTAGGTGTTCCGAAAAAGGAAAAATCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATCGTCGCTTACCGACGATGCTGCCTTGCCTCTAGTGAGAATATGTCAACCCAAGAAGTAGAAGGGGAAACCTAAAGCATGAGACAAAGACAAGGTTGAAGTCAGAAGAGTCGGCACAGTGGGTGAAGGAGCCAATTTTGGCTAGAAGGGCGGCGGTAACTTGGTTGGCGAAGAGGCCAGTGCGGCACCCATATTCCAAAGGTAATATCAACAGAAGGTTGATAGGTTTAGGTTAGGGTTTATGTGAAGGATGAAGGGAAGATTGAGAAGAAAATGAAAGAGACTATGTTGGTTGAGGAAAAATCGATTGTGTTGGAAAAGGTGGGGTTGTATGTACAGAGTATGACGAATGGTGATTTGGAGGTCAAAAGGGTGGAGCCGAAGAGTAATCGATCGGCTCCGCATGTGGCAGCCATGGTGACTGCCCCTGCGGCGTCAAAGCCAACAGGGGTGGTGGAGAAGAAGATGAGTAGGGAATTCATAAGCTATTGAAAATAAGGGATCAGGGTTGTTAAACCGAAACGGCTCTAATACCATGAGAATATTTGCTTAATTCACCACACCTAAATGGTGTGTGAAAGTTCTCTATTTATATTTAAATAAATTACAAGGATATGAAAATAGTAATAAATGAAAAGAACAATGTAAATAATATCAAATATGATATATATGGTAAACTATAATTTAGTACTAAATATCCTTAACATGAGCGAACCTCACCGGATAAGGAATCACTCCAAGGAAAAGTAAAATTTAGATTATCTTGTTGATCGAATATCTGAAGACAAGAACACTTGTTTGAGATTCTAATCATTCTAGTAGCAAAATTGATCATGTCAAACTTGAATGATTCTAGACATTTAAAAAATACTTACCAATTTACTAAAACAAGGTAGAAATGCTATTTTTACTGCATTTTCAAATCAATTTTACAAATATAACATACATGACTTTATATAGCTTCAAAATGAAGACCTTAACTTTTACCGAGACATTCCAAGAGTCGTAACTTTCATACTATAACAGTCCAAGGCCTTCTCAAGATTTTTAAAACTCGTCTACTATAGAGAGGGTCTAGCCCTCCAACCAGTGTCTTGCACAGTCCGATAACTAGCTCTGATACCATTCGTAACAACCCAAGCCCACCGCTAGTAGATATTGTCCGCTTTGGCCCATTATGTATCGTTGTCAGTCTTATGATTTTAAAACGTATCTACTAGGAAGATGTTTCCATACCTTTGTAATGAATGCTTTGTTCCCCTCTTCAACCGATGTGGGGTCTCACAATAAACGTTTATGAGTCTGTCAGACCGCCATGCGACCATCCCAGGTAGGGCGAACCTACCAAAGAACAATCATCCACATACGCTGGACCAAGGGATCATAAGTCTAGCCACACAACAGTGGTTTATCCACTAGACTTGGGTTCTTGTCTACTTAGAACTCAAGGATGCAGATGTTACACGTACTTTATAACCATAATTAGTCACTAAGTAAAAGTTACCTTAAAATAAATGAAAGAAACATCGTAACTCTAGATTATCATCCACACAAAATTTATAACCATCCGAGAATAAATGAAGTTTGATTTTCTTTAATGTGGCATGAATTGCAATATCTCCTGATAATTTGAACAACATTTTCTTCACATCTTCCTTAGGCTATGAAATTCCACGTGATTTTGTCTTTTCTCCTCCTAATTGTAATGGTAGAAAACATTTTTAGTACAGTGAGTCCTGTCATTTTATGTTGAAACATGTAACGACTCAGCTTTGGACCGTAACTATATGCATGTTATGAACGTTTTTTAAAAAATTAAAAGCATTCAAGGGTATTTTTGTAATACTTTTGAAAGTTAAAGGGCATGAACGGTTTCCATCCAATTAATGGTAACGGTTTCGATCCAAAAAATGTCATAACTCGATGTAAACTCACTCACGAACACCCTTAATCGTTCATATCCGAATTAAATATTGAAGCCTTCTCCCTCATACCCGCTCCTTTTTTCGTTCTTAATCTCTGAGAAATTCTTTATTTAAGATCGAGGTAGGGCTCTCCCCAAAAGACATTATATTTCTCTTAAGTAGAGCATTCGCTCTTCAATCTCAATCAGTATGACAACACGGAGCTCGAACATGATTACTGATTCCAACTTCAGAAGTCAAACCGACTCTAATACCAACTGTCATAATCACTCATTTTTTAGACTTGTAAAACGATTTTGTAGCACTTACTCTCGCCCTCGAGTAATTCTAACTACCTCAAACTCATATCACCATTGGCACAAAGAGCCTATTTCATAATCTCCATCCCCGTTCTTACCAAACGATTTAAAAAACATATTAAGAAATAAAATATTATATGCTAGCAATCAATAATGGACAACAACAAGATTGATAGTATATAGCCGTGTGAGGTCCCACATTGATTGAAGAGCATAACGAAGCATAATGAAGCATTTTTTTATAAGGGTGTGGAAACCTCTCCCTAGTAAACGCGTTTTAAAATCATGAGGCTGATGGCGATACTAACAGGCCAAAGTGGACAATACTTGTTAGTAGTGGACTTGGACTGTTACTAGTATCGAGCCAGACACCGGGCGGTGTACTAATGAGGACGCTGACCCCCAAAGGGAGTGGATTGTAAGAAACCACATCGGTTGGAGAAGATAACAAAGCATTTCTTATAAGAGTGTTGAAACCTTTCTCTAATAGATGCGTTTTAAAACTATGAGGCTGACAACGATAAATGGTATCAGAGCTAGACATTGAATGGTGTGCCATACAATATCTACTAGTGGTGGGCTTAAATTGTTACAAATGATATTAGAGCCAGACACCGGGCGATTTATCAACGAGGACGTTGAGCCTCCAAGGGGGTGGATTGTGAGATCTCACATTGATTAAAGATAGAAATGAAGCATTCTTATAAGGGTGTGGAAACTTCTCCCTATTAGACGTGTTTTAAAACTGTGAGGCTGACAGTAATACGTAACGCCAAAGCGGACAATATCTATTAGCAGTGAGCTTGAACGATTACAAGTTGGAATATGAAAATTTAACAACTAGTTCTCTACAGTACATTTTACTAAAAATACTCAAACCATCAACGACTTTTCAATAACTCAAATAAGCGCTAAACGAAGAAATTACAGTCGAGACAACATACCCGACGTGATGATGTGACAGCTAAATCAAAATGATGGACAAATCAAAGTATATCAAAGTATGACGCTTGTAGTTTTGAAAGGGTAACAACGGGGAGAGTTTTTCTTATTATTATATTTTTAAATAAAATTATTTACGTCTAATTAAAATTATTTATTTATATCTATTTTTATTATTACTATATTATATTATTATATTTTAAAATTTGGTTACTCCCATAATTTTATTATTATTATATTATTAGATTTATAATAAATTTTGGTGTTATTTTTATTTTTGAGAGTTTTTTTTTTTATTTTTTATTGTATTCTGAAGAAATAGTTGTGACTGCTCAAATCTAAAAGAGTCGTGGTGTGTTCATACCAAATTTAAATACTTGTATTGGTTTGATTTTGCATCGTGGGAATGATTGAGTTTGCTCTTGAACTCGTAAAAAGAGCGGGGTAGCGATTGAGCTCTAATATGTGGAAAGAGTCGAGAAAGTTCTTTATTCAAATTCACAACAGGCACTTAATAAGTGGAGTAGATCGAGTTTGACCAAACGACCATGAAAATATCAGAGTCAGATATTTGAATGAACTGAGATTAAATATTTATGAAAAAGTAGGTTAAAAATAAATAAAAAATATTTTAAAGATGTATATTTTAAAATTAAGAGTAAAATTAAATTATATAGATTATATTTAAATAACAAAAAGTCGGCGAAAACCAATTAAGCTCTTCTCATCCACGAAACTTCCATGACTTTCCTAATTCCCCAAAATCACCAAAACCAAACGCCAAAATCCCTCTCTATAAATACCCTCTTCTTCGTCTTCCCTTCCAGCTCCCCCTTTCAATTCTCCTCCATCGTCGAAATCCATCGCCGACGCCTCTCCGGAGGAAGAATCTGAAGGATTCTAG

mRNA sequence

ATGGAGAAGTTTCCGAGCTTGAATATTGGTGTTCCGAAAAAGGAAAAATCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATCGTCGCTTACCGACGATGCTGCCTTGCCTCTAGATGAAGGGAAGATTGAGAAGAAAATGAAAGAGACTATGTTGGTTGAGGAAAAATCGATTGTGTTGGAAAAGGTGGGGTTGTATGTACAGAGTATGACGAATGGTGATTTGGAGGTCAAAAGGGTGGAGCCGAAGAGTAATCGATCGGCTCCGCATGTGGCAGCCATGGTGACTGCCCCTGCGGCGTCAAAGCCAACAGGGGTGGTGGAGAAGAAGATGACTCCCCCTTTCAATTCTCCTCCATCGTCGAAATCCATCGCCGACGCCTCTCCGGAGGAAGAATCTGAAGGATTCTAG

Coding sequence (CDS)

ATGGAGAAGTTTCCGAGCTTGAATATTGGTGTTCCGAAAAAGGAAAAATCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATCGTCGCTTACCGACGATGCTGCCTTGCCTCTAGATGAAGGGAAGATTGAGAAGAAAATGAAAGAGACTATGTTGGTTGAGGAAAAATCGATTGTGTTGGAAAAGGTGGGGTTGTATGTACAGAGTATGACGAATGGTGATTTGGAGGTCAAAAGGGTGGAGCCGAAGAGTAATCGATCGGCTCCGCATGTGGCAGCCATGGTGACTGCCCCTGCGGCGTCAAAGCCAACAGGGGTGGTGGAGAAGAAGATGACTCCCCCTTTCAATTCTCCTCCATCGTCGAAATCCATCGCCGACGCCTCTCCGGAGGAAGAATCTGAAGGATTCTAG

Protein sequence

MEKFPSLNIGVPKKEKSLASARICLTYEEGSSLTDDAALPLDEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNGDLEVKRVEPKSNRSAPHVAAMVTAPAASKPTGVVEKKMTPPFNSPPSSKSIADASPEEESEGF
Homology
[Close]
BLAST of Carg24988 vs. NCBI nr
Match: XP_022929273.1 (uncharacterized protein LOC111435904 [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-14
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 0 

Query: 42  DEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNGDLEVKRVEPKSNRSAPHVAAMVTAP 101
           +EG I KK++E ML + K I+LEKV LYVQ+M   DLEVKRVEPKSN+SAP  AA+ TAP
Sbjct: 63  NEGSIRKKIREAMLAKGKLIMLEKVKLYVQNMMKSDLEVKRVEPKSNQSAPPAAAIKTAP 122

Query: 102 AASKPTGVVEKK 114
            ASKP  VVEKK
Sbjct: 123 TASKPAVVVEKK 134

[Close]
BLAST of Carg24988 vs. NCBI nr
Match: XP_022987469.1 (uncharacterized protein LOC111485008 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 9.1e-14
Identity = 51/79 (64.56%), Postives = 57/79 (72.15%), Query Frame = 0 

Query: 42  DEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNGDLEVKRVEPKSNRSAPHVAAMVTAP 101
           DEGK  KKMKE ML + K IVLEKV LYV S++ GDLEVK+VE KSN+ AP    M TAP
Sbjct: 52  DEGKNGKKMKEVMLAKGKPIVLEKVRLYVHSISKGDLEVKKVESKSNQLAPPTTTMETAP 111

Query: 102 AASKPTGVVEKKMTPPFNS 121
           AASK   VVEKKM+  F S
Sbjct: 112 AASKLAVVVEKKMSEGFKS 130

[Close]
BLAST of Carg24988 vs. NCBI nr
Match: XP_023520820.1 (uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 42  DEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNGDLEVKRVEPKSNRSAPHVAAMVTAP 101
           DEG I KKM+ET+L + K IVLEKV LYVQ M  GDLE KRVE K+N+ AP   AM T P
Sbjct: 94  DEGLIRKKMRETILAKGKPIVLEKVRLYVQIMAKGDLEAKRVELKNNQLAPPAVAMETTP 153

Query: 102 AASKPTGVVEKKM 115
             SKPT VVEKKM
Sbjct: 154 PLSKPTVVVEKKM 166

[Close]
BLAST of Carg24988 vs. NCBI nr
Match: XP_023544856.1 (uncharacterized protein LOC111804328 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 0 

Query: 42  DEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNGDLEVKRVEPKSNRSAPHVAAMVTAP 101
           DEG I KKM+E  L + KSI+L+KV LYVQSM  GDLE KRVE KSN+    VAAM TAP
Sbjct: 62  DEGSIGKKMREARLAKGKSILLKKVRLYVQSMAKGDLEAKRVEAKSNQLVLPVAAMETAP 121

Query: 102 AASKPTGVVEKKMTPPFNS 121
            AS+   VVEKKM+  F S
Sbjct: 122 TASQRAVVVEKKMSKGFRS 140

[Close]
BLAST of Carg24988 vs. NCBI nr
Match: XP_023536184.1 (uncharacterized protein LOC111797429 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 0 

Query: 43  EGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNGDLEVKRVEPKSNRSAPHVAAMVTAPA 102
           EGKI KKMK  +L + K I LE V LYVQSM  GDLEV RVE KSN+SA   AAMVTAP 
Sbjct: 69  EGKIGKKMKGAILFKGKPIGLENVRLYVQSMATGDLEVNRVESKSNQSASPAAAMVTAPT 128

Query: 103 ASKPTGVVEK 113
           ASKPT  V+K
Sbjct: 129 ASKPTVAVKK 138

[Close]
BLAST of Carg24988 vs. TAIR10
Match: AT3G12050.1 (Aha1 domain-containing protein)

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 42  DEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNG-----DLEVKRVEPKSNRSAPHVAA 101
           DEG I + +KE M+ + K I+LEKV +YV++M  G     +LE K+V PKS  +     A
Sbjct: 132 DEGPIGRTLKEAMVKKGKEIILEKVRVYVEAMARGGPCRDELESKKVAPKSVAAGSATVA 191

Query: 102 MVTAPAA 104
           +  + AA
Sbjct: 192 VEKSGAA 198

[Close]
BLAST of Carg24988 vs. TrEMBL
Match: tr|A0A0A0LGX2|A0A0A0LGX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800690 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 42  DEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNG-----DLEVKRVEPKSNRSA 92
           DEG   K+MK+ ML + K IVLEKV LYVQSM  G     DLE K+VEPKSN+SA
Sbjct: 132 DEGPFGKRMKDAMLAKGKPIVLEKVRLYVQSMAKGGPAKDDLEAKKVEPKSNQSA 186

[Close]
BLAST of Carg24988 vs. TrEMBL
Match: tr|A0A1S3B732|A0A1S3B732_CUCME (activator of 90 kDa heat shock protein ATPase homolog 1 OS=Cucumis melo OX=3656 GN=LOC103486749 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.7e-05
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 42  DEGKIEKKMKETMLVEEKSIVLEKVGLYVQSMTNG-----DLEVKRVEPKSN 89
           DEG   K+MK+ ML + K IVLEKV LYVQSM  G     DLE K+VEPKSN
Sbjct: 132 DEGPFGKRMKDAMLAKGKPIVLEKVRLYVQSMARGGPAKDDLEAKKVEPKSN 183

The following BLAST results are available for this feature:
BLAST of Carg24988 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929273.15.3e-1466.67uncharacterized protein LOC111435904 [Cucurbita moschata][more]
XP_022987469.19.1e-1464.56uncharacterized protein LOC111485008 [Cucurbita maxima][more]
XP_023520820.13.5e-1365.75uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo][more]
XP_023544856.11.7e-1262.03uncharacterized protein LOC111804328 [Cucurbita pepo subsp. pepo][more]
XP_023536184.11.1e-1167.14uncharacterized protein LOC111797429 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg24988 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12050.12.1e-0440.30Aha1 domain-containing protein[more]
BLAST of Carg24988 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg24988 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LGX2|A0A0A0LGX2_CUCSA6.0e-0661.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800690 PE=4 SV=1[more]
tr|A0A1S3B732|A0A1S3B732_CUCME6.7e-0561.54activator of 90 kDa heat shock protein ATPase homolog 1 OS=Cucumis melo OX=3656 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24988-RACarg24988-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..139

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg24988Silver-seed gourdcarcarB467
Carg24988Cucurbita maxima (Rimu)carcmaB0735
Carg24988Cucurbita maxima (Rimu)carcmaB0736
Carg24988Cucurbita moschata (Rifu)carcmoB0712
Carg24988Cucurbita moschata (Rifu)carcmoB0713
Carg24988Cucurbita pepo (Zucchini)carcpeB0742
Carg24988Cucurbita pepo (Zucchini)carcpeB0744
Carg24988Watermelon (Charleston Gray)carwcgB0509
Carg24988Watermelon (97103) v1carwmB0521
Carg24988Watermelon (97103) v2carwmbB0550