Carg24968 (gene) Silver-seed gourd

Overview
NameCarg24968
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein CROWDED NUCLEI 1
LocationCucurbita_argyrosperma_scaffold_234 : 310773 .. 311514 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTTGTTTTGCTAGAGAAGGAAGCGTGTGCTTCAAAGTGTGTCCAACTAGAACAAGATTTAGCAGAAACGGTGGAAATCTTCAAACGTGAACGATCAGCACATTTCATTGCATTATCTGAAGTTGAAACGAGGACGGATAATTTGAAGAAAGCACTAGCTGCTGAGAAGCAACATGTGTCTAGTGTATGCTACTCTTGGCACATCCATTCCCCATTAACGTATTTCTTATTTGATAATGTTGCCATTTTCCTTTCTTTTTTGTTTCTTAGATGCTCAATTTGTTAGGCCACCAATCGTAAATTTGTACTAGAAAAACATGCAAGTGGTGGGGGGAGTTAAATTTTGTCAGCCCTACTGGTAATTGGGTGAGGTGACATAGGAGAAGTTGTAACAGAGAGAGTAATGGGAGGGTAGTATCTATTCTTAAGGAGTATGTATTTGTTTAGAAGAGTCTTGTAGTATGGGAGAGAGAGGATCTTATTTTGAAATTTGGACACTAAATTGTGAAGTTATGTCTATACAAATAGATCTTAGATCTTAAAGATTGATTAAATTTTCATACCTATTCTTGCTGCAGCTTAAAAAGGCTTTATGTGAAGCAAAGGAGGAACGTGCAGAAATCGAACTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATATATGAAATTGAGGAGAAATCTTTGGAGTTGGAGAAAAAATTGTATGCTGCCGAAGCGAAGCTTGCTGAG

mRNA sequence

ATGGGACTTGTTTTGCTAGAGAAGGAAGCGTGTGCTTCAAAGTGTGTCCAACTAGAACAAGATTTAGCAGAAACGGTGGAAATCTTCAAACGTGAACGATCAGCACATTTCATTGCATTATCTGAAGTTGAAACGAGGACGGATAATTTGAAGAAAGCACTAGCTGCTGAGAAGCAACATGTGTCTAGTCTTAAAAAGGCTTTATGTGAAGCAAAGGAGGAACGTGCAGAAATCGAACTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATATATGAAATTGAGGAGAAATCTTTGGAGTTGGAGAAAAAATTGTATGCTGCCGAAGCGAAGCTTGCTGAG

Coding sequence (CDS)

ATGGGACTTGTTTTGCTAGAGAAGGAAGCGTGTGCTTCAAAGTGTGTCCAACTAGAACAAGATTTAGCAGAAACGGTGGAAATCTTCAAACGTGAACGATCAGCACATTTCATTGCATTATCTGAAGTTGAAACGAGGACGGATAATTTGAAGAAAGCACTAGCTGCTGAGAAGCAACATGTGTCTAGTCTTAAAAAGGCTTTATGTGAAGCAAAGGAGGAACGTGCAGAAATCGAACTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATATATGAAATTGAGGAGAAATCTTTGGAGTTGGAGAAAAAATTGTATGCTGCCGAAGCGAAGCTTGCTGAG

Protein sequence

MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKKLYAAEAKLAE
Homology
[Close]
BLAST of Carg24968 vs. NCBI nr
Match: XP_022930035.1 (protein CROWDED NUCLEI 2-like [Cucurbita moschata])

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 89/97 (91.75%), Postives = 89/97 (91.75%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGLVLLEKEACASKC QLEQ LAETVEIFKRERSAHFIALSEVETR DNLKKALAAEKQH
Sbjct: 44  MGLVLLEKEACASKCDQLEQKLAETVEIFKRERSAHFIALSEVETRRDNLKKALAAEKQH 103

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIE 98
           VSS     CEAKEERAEIELTSQKKLADANALIYEIE
Sbjct: 104 VSSLKKALCEAKEERAEIELTSQKKLADANALIYEIE 140

[Close]
BLAST of Carg24968 vs. NCBI nr
Match: XP_023530686.1 (protein CROWDED NUCLEI 2-like [Cucurbita pepo subsp. pepo] >XP_023530696.1 protein CROWDED NUCLEI 2-like [Cucurbita pepo subsp. pepo] >XP_023530705.1 protein CROWDED NUCLEI 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 88/97 (90.72%), Postives = 89/97 (91.75%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGLVLLEKEACASKC  LEQ+LAETVEIFKRERSAHFIALSEVETR DNLKKALAAEKQH
Sbjct: 44  MGLVLLEKEACASKCDLLEQELAETVEIFKRERSAHFIALSEVETRRDNLKKALAAEKQH 103

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIE 98
           VSS     CEAKEERAEIELTSQKKLADANALIYEIE
Sbjct: 104 VSSLKKALCEAKEERAEIELTSQKKLADANALIYEIE 140

[Close]
BLAST of Carg24968 vs. NCBI nr
Match: XP_022994499.1 (protein CROWDED NUCLEI 2-like [Cucurbita maxima] >XP_022994505.1 protein CROWDED NUCLEI 2-like [Cucurbita maxima] >XP_022994513.1 protein CROWDED NUCLEI 2-like [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 83/94 (88.30%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+LLEKEACASKC QLEQ LAETVEIFKRERSAHFIALSEVETR D LKKALAAEKQH
Sbjct: 44  MGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQH 103

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIY 95
           VSS     CEAKEE AEIELTSQKKLADANALIY
Sbjct: 104 VSSLKKALCEAKEECAEIELTSQKKLADANALIY 137

[Close]
BLAST of Carg24968 vs. NCBI nr
Match: XP_008467201.1 (PREDICTED: protein CROWDED NUCLEI 3 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+  A K  QLEQDLAET EIFKRE+SAH IALSEVETR DNLKKALAAEKQH
Sbjct: 108 MGLLLIEKKDWALKFDQLEQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQH 167

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEE 99
           VSS      E  EERAEI+LTSQKKLADANAL++ IEE
Sbjct: 168 VSSLKKSLYEVNEERAEIKLTSQKKLADANALMHGIEE 205

[Close]
BLAST of Carg24968 vs. NCBI nr
Match: XP_004147138.1 (PREDICTED: putative nuclear matrix constituent protein 1-like protein [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 8.7e-26
Identity = 72/98 (73.47%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           +GL+L+EK+  ASK  +L QDLAET EIFKRE+SAH IALSEVETR DNLKKALAAEKQH
Sbjct: 108 LGLLLIEKKDWASKFDELGQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQH 167

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEE 99
           VSS      E  EERAEI+LTSQKKLADANAL++ IEE
Sbjct: 168 VSSLKMAFYEVNEERAEIKLTSQKKLADANALMHGIEE 205

[Close]
BLAST of Carg24968 vs. TAIR10
Match: AT1G67230.1 (little nuclei1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-14
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+  +S+   L+Q   E  E  K+ER+AH IA+++VE R + L+KAL  EKQ 
Sbjct: 70  MGLLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLIAIADVEKREEGLRKALGIEKQC 129

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKS 101
                    E + E AEI+ T+  KL +ANAL+  +EEKS
Sbjct: 130 ALDLEKALKELRAENAEIKFTADSKLTEANALVRSVEEKS 169

[Close]
BLAST of Carg24968 vs. TAIR10
Match: AT1G68790.1 (little nuclei3)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 43/113 (38.05%), Postives = 73/113 (64.60%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+   S   +L+Q   E +E+ KRE++++ I L+E + R +NL+KAL  EKQ 
Sbjct: 81  MGLLLIEKKQWTSTNNELQQAYDEAMEMLKREKTSNAITLNEADKREENLRKALIDEKQF 140

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKKLYAAEAK 114
           V+         + E + ++ TS+ KL +ANAL+  ++EK+LE++++   AE K
Sbjct: 141 VAELENDLKYWQREHSVVKSTSEAKLEEANALVIGMKEKALEVDRERAIAEEK 193

[Close]
BLAST of Carg24968 vs. TAIR10
Match: AT1G13220.2 (nuclear matrix constituent protein-related)

HSP 1 Score: 57.0 bits (136), Expect = 9.0e-09
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+E +   SK  QL Q   E  EI KRE+S+H  AL+ VE R +NL+KAL  EKQ 
Sbjct: 103 MGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLYALTTVEQREENLRKALGLEKQC 162

Query: 61  V 62
           V
Sbjct: 163 V 163

[Close]
BLAST of Carg24968 vs. Swiss-Prot
Match: sp|F4HRT5|CRWN1_ARATH (Protein CROWDED NUCLEI 1 OS=Arabidopsis thaliana OX=3702 GN=CRWN1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+  +S+   L+Q   E  E  K+ER+AH IA+++VE R + L+KAL  EKQ 
Sbjct: 70  MGLLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLIAIADVEKREEGLRKALGIEKQC 129

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKS 101
                    E + E AEI+ T+  KL +ANAL+  +EEKS
Sbjct: 130 ALDLEKALKELRAENAEIKFTADSKLTEANALVRSVEEKS 169

[Close]
BLAST of Carg24968 vs. Swiss-Prot
Match: sp|Q9CA42|CRWN3_ARATH (Protein CROWDED NUCLEI 3 OS=Arabidopsis thaliana OX=3702 GN=CRWN3 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-12
Identity = 43/113 (38.05%), Postives = 73/113 (64.60%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+   S   +L+Q   E +E+ KRE++++ I L+E + R +NL+KAL  EKQ 
Sbjct: 81  MGLLLIEKKQWTSTNNELQQAYDEAMEMLKREKTSNAITLNEADKREENLRKALIDEKQF 140

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKKLYAAEAK 114
           V+         + E + ++ TS+ KL +ANAL+  ++EK+LE++++   AE K
Sbjct: 141 VAELENDLKYWQREHSVVKSTSEAKLEEANALVIGMKEKALEVDRERAIAEEK 193

[Close]
BLAST of Carg24968 vs. Swiss-Prot
Match: sp|Q9SAF6|CRWN2_ARATH (Protein CROWDED NUCLEI 2 OS=Arabidopsis thaliana OX=3702 GN=CRWN2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+E +   SK  QL Q   E  EI KRE+S+H  AL+ VE R +NL+KAL  EKQ 
Sbjct: 103 MGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLYALTTVEQREENLRKALGLEKQC 162

Query: 61  V 62
           V
Sbjct: 163 V 163

[Close]
BLAST of Carg24968 vs. TrEMBL
Match: tr|A0A1S3CSZ3|A0A1S3CSZ3_CUCME (protein CROWDED NUCLEI 3 OS=Cucumis melo OX=3656 GN=LOC103504607 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-27
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+  A K  QLEQDLAET EIFKRE+SAH IALSEVETR DNLKKALAAEKQH
Sbjct: 108 MGLLLIEKKDWALKFDQLEQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQH 167

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEE 99
           VSS      E  EERAEI+LTSQKKLADANAL++ IEE
Sbjct: 168 VSSLKKSLYEVNEERAEIKLTSQKKLADANALMHGIEE 205

[Close]
BLAST of Carg24968 vs. TrEMBL
Match: tr|A0A1R3KBB1|A0A1R3KBB1_9ROSI (Putative nuclear matrix constituent protein 1-like protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_09722 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+   SKC +L+++LAE  EI +RE++AH IA SEVE R +NL KALA EKQ 
Sbjct: 110 MGLLLIEKKEWTSKCEELKRELAEAEEILRREQAAHLIAFSEVEKREENLAKALAVEKQC 169

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKKLYAAEAKLAE 117
           V+       + +EE A+++L+S  KLA+A A++ EIE KS E+E+K+ AA+A   E
Sbjct: 170 VADLEKALRDIQEEHAQVKLSSDTKLANATAIVAEIERKSAEVEEKMLAADAXXXE 225

[Close]
BLAST of Carg24968 vs. TrEMBL
Match: tr|A0A1U8M7P7|A0A1U8M7P7_GOSHI (LOW QUALITY PROTEIN: protein CROWDED NUCLEI 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107934791 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+   SKC +L+Q+LAE  EI +RE++AH IALSEVE R +NL KALAAEKQ 
Sbjct: 115 MGLLLIEKKEWTSKCEELKQELAEVEEILRREQAAHLIALSEVEKREENLAKALAAEKQC 174

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKK 107
           V+       + +EE  +++L+S  KLA+ANAL+  IE KSLE+E+K
Sbjct: 175 VADLEKALRDIQEEHVQVKLSSDTKLANANALVAGIEGKSLEVEEK 220

[Close]
BLAST of Carg24968 vs. TrEMBL
Match: tr|A0A0D2T8I8|A0A0D2T8I8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187500 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+   SKC +L+Q+LAE  EI +RE++AH IALSEVE R +NL KALAAEKQ 
Sbjct: 115 MGLLLIEKKEWTSKCEELKQELAEVEEILRREQAAHLIALSEVEKREENLAKALAAEKQC 174

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKK 107
           V+       + +EE  +++L+S  KLA+ANAL+  IE KSLE+E+K
Sbjct: 175 VADLEKALRDIQEEHVQVKLSSDTKLANANALVAGIEGKSLEVEEK 220

[Close]
BLAST of Carg24968 vs. TrEMBL
Match: tr|A0A0D2PXD7|A0A0D2PXD7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187500 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 0 

Query: 1   MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQH 60
           MGL+L+EK+   SKC +L+Q+LAE  EI +RE++AH IALSEVE R +NL KALAAEKQ 
Sbjct: 115 MGLLLIEKKEWTSKCEELKQELAEVEEILRREQAAHLIALSEVEKREENLAKALAAEKQC 174

Query: 61  VSSXXXXXCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKK 107
           V+       + +EE  +++L+S  KLA+ANAL+  IE KSLE+E+K
Sbjct: 175 VADLEKALRDIQEEHVQVKLSSDTKLANANALVAGIEGKSLEVEEK 220

The following BLAST results are available for this feature:
BLAST of Carg24968 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930035.11.4e-3691.75protein CROWDED NUCLEI 2-like [Cucurbita moschata][more]
XP_023530686.14.1e-3690.72protein CROWDED NUCLEI 2-like [Cucurbita pepo subsp. pepo] >XP_023530696.1 prote... [more]
XP_022994499.11.9e-3388.30protein CROWDED NUCLEI 2-like [Cucurbita maxima] >XP_022994505.1 protein CROWDED... [more]
XP_008467201.11.3e-2675.51PREDICTED: protein CROWDED NUCLEI 3 [Cucumis melo][more]
XP_004147138.18.7e-2673.47PREDICTED: putative nuclear matrix constituent protein 1-like protein [Cucumis s... [more]
BLAST of Carg24968 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67230.11.1e-1444.00little nuclei1[more]
AT1G68790.13.5e-1338.05little nuclei3[more]
AT1G13220.29.0e-0952.46nuclear matrix constituent protein-related[more]
BLAST of Carg24968 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4HRT5|CRWN1_ARATH2.0e-1344.00Protein CROWDED NUCLEI 1 OS=Arabidopsis thaliana OX=3702 GN=CRWN1 PE=1 SV=1[more]
sp|Q9CA42|CRWN3_ARATH6.3e-1238.05Protein CROWDED NUCLEI 3 OS=Arabidopsis thaliana OX=3702 GN=CRWN3 PE=1 SV=1[more]
sp|Q9SAF6|CRWN2_ARATH1.6e-0752.46Protein CROWDED NUCLEI 2 OS=Arabidopsis thaliana OX=3702 GN=CRWN2 PE=1 SV=1[more]
BLAST of Carg24968 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CSZ3|A0A1S3CSZ3_CUCME8.8e-2775.51protein CROWDED NUCLEI 3 OS=Cucumis melo OX=3656 GN=LOC103504607 PE=4 SV=1[more]
tr|A0A1R3KBB1|A0A1R3KBB1_9ROSI4.0e-1950.00Putative nuclear matrix constituent protein 1-like protein-like protein OS=Corch... [more]
tr|A0A1U8M7P7|A0A1U8M7P7_GOSHI5.2e-1954.72LOW QUALITY PROTEIN: protein CROWDED NUCLEI 2-like OS=Gossypium hirsutum OX=3635... [more]
tr|A0A0D2T8I8|A0A0D2T8I8_GOSRA5.2e-1954.72Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187500 PE=4 ... [more]
tr|A0A0D2PXD7|A0A0D2PXD7_GOSRA5.2e-1954.72Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187500 PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24968-RACarg24968-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 64..84
NoneNo IPR availableCOILSCoilCoilcoord: 86..116
NoneNo IPR availablePANTHERPTHR31908:SF5PROTEIN CROWDED NUCLEI 2-RELATEDcoord: 1..116
NoneNo IPR availablePANTHERPTHR31908FAMILY NOT NAMEDcoord: 1..116

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24968CmaCh04G019330Cucurbita maxima (Rimu)carcmaB1020
Carg24968CmoCh04G020510Cucurbita moschata (Rifu)carcmoB0992
Carg24968Cp4.1LG01g16820Cucurbita pepo (Zucchini)carcpeB1026
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg24968Bottle gourd (USVL1VR-Ls)carlsiB667
Carg24968Watermelon (Charleston Gray)carwcgB0706
Carg24968Watermelon (97103) v1carwmB0727
Carg24968Watermelon (97103) v2carwmbB0762
Carg24968Wax gourdcarwgoB0861