Carg24962 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24962
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S4
Location	Cucurbita_argyrosperma_scaffold_234 : 164777 .. 166515 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTCGGTGGTGCATTTGTGAGTGAAATTTCTAGTTTCCATTTCAGTTTACCTTTTTATTTTTGGGACAAACTTATTGATGACATTTAGTTCGACCTTTTTGACTCCTTTGTAGGCCCCCAAACCTTCATCTGGACCTCACAAATCAAGGGAATGTCTCCCACTGATTTTGATATTGCGTAACAGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATGTTTTAGTTGATGGGAAGGTGAGGACAGACAAGACGTACCCTGCTGGGTTCATGGGTATGCTTATCTCAAACATCGCATGCATACTATTATTTCAGTTTCAATACCTATTCACCATTGTTCACAAGTCCCACAAATGCACATATCTATCTAGGCAAATTACTATTTGCAAACGAGATACATAACAGTGCCCTGATAATAGAATGTGTTCCAATGACTTGATTGTCTGCTCTTATCTAAATCATTCTCTTAACCATGGTACTGCTTTCATCCAATTATTATTTTTTTATGTACATTTCAAGCATGATGCTTTTGTTTTTTAGATGTTGTGTCGATTCCCAAAACAAATGAGAATTTCCGGCTTCTCTACGACACAAAAGGCCGATTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGGTTAGCTTTTGTTCTTTCATGACGAAGTTTGATATGTTTGTTACGACAATTCCTGTTGTATAGAATGTATACTGTCAGGATTCAGAGGAAATTAGATGCAATTGCAATCAGAGGTCTTACAACTTGTCCAGACAGAAAATATTATATTTTTAAAACCATTGTGCATTTTTTAGATGCTGTTTTTCACCTTGATTATTATCATGTGAGGTTCAGGAAGGCAAATTAATTTCCAAATCCTCTGAAGTAATAAGCTTGTCTGTTGTCCATGATATATGGAATGGGATGATTGGTGATGACTGATTGATTTTGCAGTTTAAGCTGTGCAAAGTTCGGTCAGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAACACTTACGATGGACGAACAATCCGATATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTAGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTGGGAAACGTTGTGATGGTGACTGGTGGAAGAAATAGAGGACGAGTTGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATTCACATTCAGGATGCTACCGGGCATGAATTTGCAACTCGGCTGGGCAATGTGTTTACGATTGGGAAGGGGACAAAGCCATGGGTGTCCCTTCCCAAGGGCAAGGGTATAAAACTATCCATCATTGAAGAAGCCAGGAAGAGGCTTGCCAACCAAGCAGCCGTTACGGTTTAAGAGTTGAGTGTTGTAGTCATGATTCTAAGACTATTTTTGTTTAATATTTGGTGTTCTAATATGATTATAAATTAGATGTTGAGACTATTTCTGTTGCTTCTATAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATGGAGATGGAAATATTAGCATCTATTAGGAATCTATAATTAACATTTGACCAAAGCTGTTAAATTTTATAAGATTTAAGTTTTAAGTTTTTTACATATCGGCCATTATTGGTCATAGGTTGTTAGGCCTAGCTT

mRNA sequence

GGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTCGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCACAAATCAAGGGAATGTCTCCCACTGATTTTGATATTGCGTAACAGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATGTTTTAGTTGATGGGAAGGTGAGGACAGACAAGACGTACCCTGCTGGGTTCATGGATGTTGTGTCGATTCCCAAAACAAATGAGAATTTCCGGCTTCTCTACGACACAAAAGGCCGATTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGTTTAAGCTGTGCAAAGTTCGGTCAGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAACACTTACGATGGACGAACAATCCGATATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTAGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTGGGAAACGTTGTGATGGTGACTGGTGGAAGAAATAGAGGACGAGTTGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATTCACATTCAGGATGCTACCGGGCATGAATTTGCAACTCGGCTGGGCAATGTGTTTACGATTGGGAAGGGGACAAAGCCATGGGTGTCCCTTCCCAAGGGCAAGGGTATAAAACTATCCATCATTGAAGAAGCCAGGAAGAGGCTTGCCAACCAAGCAGCCGTTACGGTTTAAGAGTTGAGTGTTGTAGTCATGATTCTAAGACTATTTTTGTTTAATATTTGGTGTTCTAATATGATTATAAATTAGATGTTGAGACTATTTCTGTTGCTTCTATAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATGGAGATGGAAATATTAGCATCTATTAGGAATCTATAATTAACATTTGACCAAAGCTGTTAAATTTTATAAGATTTAAGTTTTAAGTTTTTTACATATCGGCCATTATTGGTCATAGGTTGTTAGGCCTAGCTT

Coding sequence (CDS)

ATGCTCGACAAACTCGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCACAAATCAAGGGAATGTCTCCCACTGATTTTGATATTGCGTAACAGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATGTTTTAGTTGATGGGAAGGTGAGGACAGACAAGACGTACCCTGCTGGGTTCATGGATGTTGTGTCGATTCCCAAAACAAATGAGAATTTCCGGCTTCTCTACGACACAAAAGGCCGATTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGTTTAAGCTGTGCAAAGTTCGGTCAGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAACACTTACGATGGACGAACAATCCGATATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTAGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTGGGAAACGTTGTGATGGTGACTGGTGGAAGAAATAGAGGACGAGTTGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATTCACATTCAGGATGCTACCGGGCATGAATTTGCAACTCGGCTGGGCAATGTGTTTACGATTGGGAAGGGGACAAAGCCATGGGTGTCCCTTCCCAAGGGCAAGGGTATAAAACTATCCATCATTGAAGAAGCCAGGAAGAGGCTTGCCAACCAAGCAGCCGTTACGGTTTAA

Protein sequence

MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLANQAAVTV

Homology

[Close]

BLAST of Carg24962 vs. NCBI nr
Match: XP_022930037.1 (40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_023518516.1 40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 497.3 bits (1279), Expect = 3.0e-137
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 258

Query: 241 QAAVTV 247
           QAAVTV
Sbjct: 259 QAAVTV 264

[Close]

BLAST of Carg24962 vs. NCBI nr
Match: XP_022994321.1 (40S ribosomal protein S4-3 [Cucurbita maxima])

HSP 1 Score: 496.9 bits (1278), Expect = 4.0e-137
Identity = 245/246 (99.59%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCK+RSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKIRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 258

Query: 241 QAAVTV 247
           QAAVTV
Sbjct: 259 QAAVTV 264

[Close]

BLAST of Carg24962 vs. NCBI nr
Match: XP_022132117.1 (40S ribosomal protein S4-3 [Momordica charantia])

HSP 1 Score: 491.5 bits (1264), Expect = 1.7e-135
Identity = 242/245 (98.78%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVT 246
           QAAVT
Sbjct: 259 QAAVT 263

[Close]

BLAST of Carg24962 vs. NCBI nr
Match: XP_023546337.1 (40S ribosomal protein S4-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 489.6 bits (1259), Expect = 6.3e-135
Identity = 238/245 (97.14%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYREVISILMQRH+LVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYREVISILMQRHILVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGV+KNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVLKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFET+HIQDATGHEFATRLGNVFT+GKGTKPWVSLPKGKGIKLSIIEEARKRLA+
Sbjct: 199 EKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVT 246
           QAAVT
Sbjct: 259 QAAVT 263

[Close]

BLAST of Carg24962 vs. NCBI nr
Match: XP_022957194.1 (40S ribosomal protein S4-3 [Cucurbita moschata])

HSP 1 Score: 489.2 bits (1258), Expect = 8.3e-135
Identity = 237/245 (96.73%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYREVISILMQRH+LVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYREVISILMQRHILVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVG++KNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGILKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFET+HIQDATGHEFATRLGNVFT+GKGTKPWVSLPKGKGIKLSIIEEARKRLA+
Sbjct: 199 EKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVT 246
           QAAVT
Sbjct: 259 QAAVT 263

[Close]

BLAST of Carg24962 vs. TAIR10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 471.9 bits (1213), Expect = 2.5e-133
Identity = 226/243 (93.00%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Carg24962 vs. TAIR10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 471.5 bits (1212), Expect = 3.2e-133
Identity = 226/243 (93.00%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Carg24962 vs. TAIR10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 469.2 bits (1206), Expect = 1.6e-132
Identity = 225/243 (92.59%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKRL+ 
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSA 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Carg24962 vs. Swiss-Prot
Match: sp|Q8VYK6|RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 471.9 bits (1213), Expect = 4.5e-132
Identity = 226/243 (93.00%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Carg24962 vs. Swiss-Prot
Match: sp|P49204|RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 471.5 bits (1212), Expect = 5.8e-132
Identity = 226/243 (93.00%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Carg24962 vs. Swiss-Prot
Match: sp|P46300|RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 1.7e-131
Identity = 226/243 (93.00%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVISILMQR V+VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPKGKGIKL+IIE+ARKRLA 
Sbjct: 199 EKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKRLAA 258

Query: 241 QAA 244
           Q+A
Sbjct: 259 QSA 261

[Close]

BLAST of Carg24962 vs. Swiss-Prot
Match: sp|Q93VH9|RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 2.9e-131
Identity = 225/243 (92.59%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKRL+ 
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSA 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QQA 261

[Close]

BLAST of Carg24962 vs. Swiss-Prot
Match: sp|P46299|RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 2.7e-129
Identity = 226/243 (93.00%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHV+VDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++  +E KFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPK KGIKLSIIEEARKRLA 
Sbjct: 199 EKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKRLAA 258

Query: 241 QAA 244
           Q A
Sbjct: 259 QNA 261

[Close]

BLAST of Carg24962 vs. TrEMBL
Match: tr|A0A0A0K4K7|A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 4.6e-134
Identity = 238/245 (97.14%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPKGKGIKLSIIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVT 246
           QAAVT
Sbjct: 259 QAAVT 263

[Close]

BLAST of Carg24962 vs. TrEMBL
Match: tr|A0A1S3BZK5|A0A1S3BZK5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 7.9e-134
Identity = 238/245 (97.14%), Postives = 244/245 (99.59%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVD KVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAKFKLCKVRSVQFGQKGIPY
Sbjct: 79  DKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKL+IIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 258

Query: 241 QAAVT 246
           QAAVT
Sbjct: 259 QAAVT 263

[Close]

BLAST of Carg24962 vs. TrEMBL
Match: tr|A0A1S3CEH5|A0A1S3CEH5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 7.9e-134
Identity = 238/245 (97.14%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVS+PKGKGIKLSIIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVT 246
           QAAVT
Sbjct: 259 QAAVT 263

[Close]

BLAST of Carg24962 vs. TrEMBL
Match: tr|A0A1S3CEL9|A0A1S3CEL9_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 7.9e-134
Identity = 237/245 (96.73%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMD++SIPKTNENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNT+DGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLA+
Sbjct: 199 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVT 246
           QAAVT
Sbjct: 259 QAAVT 263

[Close]

BLAST of Carg24962 vs. TrEMBL
Match: tr|A0A0A0K3Y8|A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 1.3e-133
Identity = 238/245 (97.14%), Postives = 243/245 (99.18%), Query Frame = 0


Query: 1   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 60
           MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 78

Query: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 120
           DKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK+KLCKVRSVQFGQKGIPY
Sbjct: 79  DKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138

Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 180
           LNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198

Query: 181 EKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAN 240
           EKH GSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLA+
Sbjct: 199 EKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258

Query: 241 QAAVT 246
           QA VT
Sbjct: 259 QATVT 263

The following BLAST results are available for this feature:

BLAST of Carg24962 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930037.1	3.0e-137	100.00	40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_023518516.1 40S ribosom...	[more]
XP_022994321.1	4.0e-137	99.59	40S ribosomal protein S4-3 [Cucurbita maxima]	[more]
XP_022132117.1	1.7e-135	98.78	40S ribosomal protein S4-3 [Momordica charantia]	[more]
XP_023546337.1	6.3e-135	97.14	40S ribosomal protein S4-3 [Cucurbita pepo subsp. pepo]	[more]
XP_022957194.1	8.3e-135	96.73	40S ribosomal protein S4-3 [Cucurbita moschata]	[more]

BLAST of Carg24962 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58420.1	2.5e-133	93.00	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	3.2e-133	93.00	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	1.6e-132	92.59	Ribosomal protein S4 (RPS4A) family protein	[more]

BLAST of Carg24962 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYK6\|RS43_ARATH	4.5e-132	93.00	40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2	[more]
sp\|P49204\|RS42_ARATH	5.8e-132	93.00	40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4	[more]
sp\|P46300\|RS4_SOLTU	1.7e-131	93.00	40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1	[more]
sp\|Q93VH9\|RS41_ARATH	2.9e-131	92.59	40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1	[more]
sp\|P46299\|RS4_GOSHI	2.7e-129	93.00	40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1	[more]

BLAST of Carg24962 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4K7\|A0A0A0K4K7_CUCSA	4.6e-134	97.14	40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1	[more]
tr\|A0A1S3BZK5\|A0A1S3BZK5_CUCME	7.9e-134	97.14	40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1	[more]
tr\|A0A1S3CEH5\|A0A1S3CEH5_CUCME	7.9e-134	97.14	40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1	[more]
tr\|A0A1S3CEL9\|A0A1S3CEL9_CUCME	7.9e-134	96.73	40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1	[more]
tr\|A0A0A0K3Y8\|A0A0A0K3Y8_CUCSA	1.3e-133	97.14	40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G281390 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR038237	Ribosomal_S4e_central_sf
IPR000876	Ribosomal_S4e
IPR013845	Ribosomal_S4e_central_region
IPR014722	Rib_L2_dom2
IPR032277	40S_S4_C
IPR013843	Ribosomal_S4e_N
IPR005824	KOW
IPR002942	S4_RNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24962-RA	Carg24962-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 24..88 e-value: 9.3E-5 score: 31.8
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 29..72 e-value: 4.5E-7 score: 29.4
IPR002942	RNA-binding S4 domain	PROSITE	PS50889	S4	coord: 24..86 score: 9.052
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 33..94 e-value: 9.4279E-6 score: 41.081
IPR005824	KOW	SMART	SM00739	kow_9	coord: 156..183 e-value: 7.7E-4 score: 28.8
IPR005824	KOW	PFAM	PF00467	KOW	coord: 159..192 e-value: 1.3E-6 score: 28.0
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 1..21 e-value: 5.0E-7 score: 29.6
IPR032277	40S ribosomal protein S4, C-terminal domain	PFAM	PF16121	40S_S4_C	coord: 194..240 e-value: 1.3E-26 score: 91.9
None	No IPR available	GENE3D	G3DSA:3.10.290.40		coord: 1..99 e-value: 9.7E-49 score: 166.1
None	No IPR available	PANTHER	PTHR11581:SF11	SUBFAMILY NOT NAMED	coord: 1..242
None	No IPR available	CDD	cd06087	KOW_RPS4	coord: 157..211 e-value: 2.19991E-29 score: 105.29
IPR014722	Ribosomal protein L2, domain 2	GENE3D	G3DSA:2.30.30.30		coord: 157..227 e-value: 4.0E-38 score: 131.1
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 77..151 e-value: 8.1E-36 score: 121.7
IPR013845	Ribosomal protein S4e, central region	PRODOM	PD002667		coord: 69..158 e-value: 4.0E-46 score: 465.0
IPR000876	Ribosomal protein S4e	PIRSF	PIRSF002116	RPS4a_RPS4e	coord: 1..223 e-value: 6.1E-87 score: 288.8
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 1..242
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 3..220 score: 30.352
IPR038237	Ribosomal protein S4e, central domain superfamily	GENE3D	G3DSA:2.40.50.740		coord: 104..154 e-value: 2.8E-30 score: 105.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24962	CmaCh04G019460	Cucurbita maxima (Rimu)	carcmaB1020
Carg24962	CmoCh04G020590	Cucurbita moschata (Rifu)	carcmoB0992

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24962	Bottle gourd (USVL1VR-Ls)	carlsiB667
Carg24962	Watermelon (Charleston Gray)	carwcgB0706
Carg24962	Watermelon (97103) v1	carwmB0727
Carg24962	Watermelon (97103) v2	carwmbB0762