Carg24957 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24957
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	COP9 signalosome complex subunit 1
Location	Cucurbita_argyrosperma_scaffold_290 : 169528 .. 171523 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGCTCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCAATAATCAAATCCAGGTTTCTTTTCAACCATCCTTCATTTGTTTGTTGTTTCGATTTACATAATATTGTTATTACATGAAATGCTTCATGATGGTTGGATGGATTTATAAATCTGTGAAAAAAAATTATTACGAGGCATTGGAGCTATTCCACTGGTTGCTGTGTACTCATAACTCATAATGCATAACTAGGATTAAGCGTTATCTTTGGCTATCTGAAGTTCTCTTGATAGTGTCTTGTCTTCCTCCCTCCCCCCACCCCAACCAAACTTGTGCAACTGATTATTGGTTAACTGGGACCAAATCAACTTTTAGATGCATCTTTGAACCTATTAGCGACGAACGTTGTTAGGATTAATTGGATTCAGTTTAGTATTCAAGTGATCACTACATAACTTTTAGTTGTTGTAGGTCTACTTAGATGCTAAGTAGCTTTATAATTCATAGGATTCGAGCTTATATGCATTTCTGTGGAGTTTTATTTCGTTGAAGTGCTGAAATTAATAACCGAGCTTAGCTACAAATGTGACCAAAAATTGCCCAAATCAACAAAAGGGCCAGCCAACAAAATGTTCAAAATCTAGTCACAACAATATCTAAGGCTATCCATCATTCCTTTGCATTATTTATTTATTTCTTTACCAGGTGTTGTAAGTTGTTCTTAAAATCCGATCCCCACTCCTTTGCCTTTTGTCACTTAGCATGCAAGCGACAAGGGGGGTTATTTGTAACAGCCCAAGCCCATCGTTAATATAGATATTGTCCGCTTTGGCCCATTCCATATCACCATTAACCTCATGGTTTTTAAAACGTGTCTACTAGGAAGAGGTTTTCACACCCTTATAAGGAATGTTTCGTTCCCCTCTTCAATCGATATGGGATCTCACATTATTACAGGCCCCTCACCCCTAAAAATTAGCTTTGTTGAACTCCTTGACGCCATTTCCCTACTCCCCAACCCCTTTGGCTTCCATTAAGAAAGGTTGAGAATTTAGTTCTTACGCGATGCAACACCCCCATCCACTTCAATCAGCTACTCCCAAACCAGCAATCAACTATGTCTCTTTTATTAGGCCTTCCTCCCCACCACAATCTCATTTCAAACAGTTTTAGATTTCGAGGGGGAGTTTTTGATTTCTTTGTGTAATAAACTTGGTTTTATTTTTTAAACTATTATTTTTTTTGTCATGAACACCTATTTATTTCATCATCCCCTCAGTTTTCGTGTTTGTTTATGGATATCCAAACCGATGCTAGCATCATTCACTGTTTCACTAATCATGCTTGCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTCGATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGATATATTTTTTTAAATCTGGGCTGCTGGTAGGACCATGTTTTTCTTCTTCATTGGCTTTCATTGTGAGCCATGAGAGAGGTTGCATAGAATCAAAAATGAGATTAAAATTGGAAGTTCCATGAGAGGTGGTGGATTGTTAGAACACATACATACTGCTTGCTGGCTGCTGGTTTTGTGAATACTGATTTTTCTCAGTTGCAGTTCTTGATTCTTCCAGTTTTTCCTTACAGATTCCAGGGAAACATCTTCAACTTTGGCTGTAAGTTGAATATTCCAAGTAATGCTAGTCTCTGTCCTTTGTTTTTTTC

mRNA sequence

CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGCTCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCAATAATCAAATCCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTCGATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGATATATTTTTTTAAATCTGGGCTGCTGGTAGGACCATGTTTTTCTTCTTCATTGGCTTTCATTGTGAGCCATGAGAGAGGTTGCATAGAATCAAAAATGAGATTAAAATTGGAAGTTCCATGAGAGGTGGTGGATTGTTAGAACACATACATACTGCTTGCTGGCTGCTGGTTTTGTGAATACTGATTTTTCTCAGTTGCAGTTCTTGATTCTTCCAGTTTTTCCTTACAGATTCCAGGGAAACATCTTCAACTTTGGCTGTAAGTTGAATATTCCAAGTAATGCTAGTCTCTGTCCTTTGTTTTTTTC

Coding sequence (CDS)

CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGCTCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCAATAATCAAATCCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTCGATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGA

Protein sequence

HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

Homology

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_022974152.1 (COP9 signalosome complex subunit 1-like [Cucurbita maxima] >XP_022975364.1 COP9 signalosome complex subunit 1-like isoform X1 [Cucurbita maxima] >XP_022975365.1 COP9 signalosome complex subunit 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 1.0e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_023539767.1 (COP9 signalosome complex subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 1.0e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_022939807.1 (COP9 signalosome complex subunit 1-like [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 2.3e-70
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRS+LLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSLLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_004133880.1 (PREDICTED: COP9 signalosome complex subunit 1 [Cucumis sativus] >KGN56548.1 hypothetical protein Csa_3G123210 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 1.2e-69
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQ+GSEFDREVRSMLLR
Sbjct: 374 VAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQSGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_008438090.1 (PREDICTED: COP9 signalosome complex subunit 1 [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 1.2e-69
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQ+GSEFDREVRSMLLR
Sbjct: 374 VAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQSGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. TAIR10
Match: AT3G61140.1 (26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain)

HSP 1 Score: 221.1 bits (562), Expect = 4.2e-58
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL+YL +LK NLLLDIHLHDHV+TLYDQIR KALIQYTLPFVSVDL  MA+AFKTSV
Sbjct: 307 YASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSV 366

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           +GLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQ+VLQ G+EFDR+VR+MLLRA
Sbjct: 367 SGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRA 426

Query: 122 NLIKHDYNQRGGSR 136
           NL+KH+Y+ R   +
Sbjct: 427 NLLKHEYHARSARK 440

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BLAST of Carg24957 vs. Swiss-Prot
Match: sp|P45432|CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CSN1 PE=1 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 7.6e-57
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL+YL +LK NLLLDIHLHDHV+TLYDQIR KALIQYTLPFVSVDL  MA+AFKTSV
Sbjct: 307 YASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSV 366

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           +GLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQ+VLQ G+EFDR+VR+MLLRA
Sbjct: 367 SGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRA 426

Query: 122 NLIKHDYNQRGGSR 136
           NL+KH+Y+ R   +
Sbjct: 427 NLLKHEYHARSARK 440

[Close]

BLAST of Carg24957 vs. Swiss-Prot
Match: sp|Q54QX3|CSN1_DICDI (COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=csn1 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.3e-35
Identity = 73/126 (57.94%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           Y SCL YL  +KP LLLDIHL+ HVE LY +IR KAL+QY  P+ SVD+++MA+AF T+V
Sbjct: 295 YGSCLKYLDKMKPILLLDIHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAFNTTV 354

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           T LEKE+  LI  N+IQARIDSHNK LYAR ADQR  TF++ +Q GS+F     S+LLR 
Sbjct: 355 TLLEKEISKLIMENEIQARIDSHNKRLYARKADQRTTTFEKTVQVGSDFQNSSNSLLLRL 414

Query: 122 NLIKHD 128
            ++ ++
Sbjct: 415 EMLNNN 420

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BLAST of Carg24957 vs. Swiss-Prot
Match: sp|Q6NRT5|CSN1_XENLA (COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.9e-32
Identity = 71/135 (52.59%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D++ MA AF T+V
Sbjct: 334 YASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTV 393

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           + LE EL  LI    I ARIDSH+KILYAR  DQR+ TF++ LQ G EF R  ++M+LRA
Sbjct: 394 SALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMILRA 453

Query: 122 NLIKHDYNQRGGSRK 137
            ++++  + +   R+
Sbjct: 454 AVLRNQIHVKSPPRE 468

[Close]

BLAST of Carg24957 vs. Swiss-Prot
Match: sp|Q99LD4|CSN1_MOUSE (COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-32
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D+H MA AF T+V
Sbjct: 318 YASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTV 377

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
             LE EL  LI    I ARIDSH+KILYAR  DQR+ TF++ L  G EF R  ++M+LRA
Sbjct: 378 AALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRA 437

Query: 122 NLIKHDYNQRGGSRK 137
            ++++  + +   R+
Sbjct: 438 AVLRNQIHVKSPPRE 452

[Close]

BLAST of Carg24957 vs. Swiss-Prot
Match: sp|Q13098|CSN1_HUMAN (COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4)

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-32
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D+H MA AF T+V
Sbjct: 338 YASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTV 397

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
             LE EL  LI    I AR+DSH+KILYAR  DQR+ TF++ L  G EF R  ++M+LRA
Sbjct: 398 AALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRA 457

Query: 122 NLIKHDYNQRGGSRK 137
            ++++  + +   R+
Sbjct: 458 AVLRNQIHVKSPPRE 472

[Close]

BLAST of Carg24957 vs. TrEMBL
Match: tr|A0A1S3AV75|A0A1S3AV75_CUCME (COP9 signalosome complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103483302 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 7.6e-70
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQ+GSEFDREVRSMLLR
Sbjct: 374 VAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQSGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. TrEMBL
Match: tr|A0A0A0L4A8|A0A0A0L4A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G123210 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 7.6e-70
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQ+GSEFDREVRSMLLR
Sbjct: 374 VAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQSGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. TrEMBL
Match: tr|A0A2P5AYU3|A0A2P5AYU3_PARAD (26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_287720 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.3e-63
Identity = 123/137 (89.78%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLK NLLLDIHLHDHVETLYDQIR+KALIQYT PFVSVDLHMMANAFKTS
Sbjct: 320 HYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTS 379

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           +TGLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQRVLQTG EFDR+VRSMLLR
Sbjct: 380 ITGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGGEFDRDVRSMLLR 439

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHD+N +  SRK+
Sbjct: 440 ANLIKHDFNLKASSRKL 456

[Close]

BLAST of Carg24957 vs. TrEMBL
Match: tr|A0A2P5CNT9|A0A2P5CNT9_9ROSA (26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_278450 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 6.9e-63
Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLK NLLLDIHLHDHVETLYDQIR+KALIQYT PFVSVDLHMMANAFKTS
Sbjct: 311 HYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTS 370

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           +TGLEKELE LIT NQIQARIDSHNKILYARHADQRNATFQRVLQTG EFDR+VRSMLLR
Sbjct: 371 ITGLEKELEALITENQIQARIDSHNKILYARHADQRNATFQRVLQTGGEFDRDVRSMLLR 430

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHD+N +  SRK+
Sbjct: 431 ANLIKHDFNLKASSRKL 447

[Close]

BLAST of Carg24957 vs. TrEMBL
Match: tr|A0A059BZZ1|A0A059BZZ1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E00211 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.2e-61
Identity = 124/137 (90.51%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCL+YLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYT PFVSVDL MMANAFKTS
Sbjct: 305 HYASCLEYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTHPFVSVDLRMMANAFKTS 364

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDR+VRSMLLR
Sbjct: 365 VAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDRDVRSMLLR 424

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIK+D+N R  SRK+
Sbjct: 425 ANLIKYDHNLR-ASRKL 440

The following BLAST results are available for this feature:

BLAST of Carg24957 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974152.1	1.0e-70	100.00	COP9 signalosome complex subunit 1-like [Cucurbita maxima] >XP_022975364.1 COP9 ...	[more]
XP_023539767.1	1.0e-70	100.00	COP9 signalosome complex subunit 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022939807.1	2.3e-70	99.27	COP9 signalosome complex subunit 1-like [Cucurbita moschata]	[more]
XP_004133880.1	1.2e-69	98.54	PREDICTED: COP9 signalosome complex subunit 1 [Cucumis sativus] >KGN56548.1 hypo...	[more]
XP_008438090.1	1.2e-69	98.54	PREDICTED: COP9 signalosome complex subunit 1 [Cucumis melo]	[more]

BLAST of Carg24957 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61140.1	4.2e-58	81.34	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain	[more]

BLAST of Carg24957 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P45432\|CSN1_ARATH	7.6e-57	81.34	COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CSN1 PE=1 ...	[more]
sp\|Q54QX3\|CSN1_DICDI	6.3e-35	57.94	COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=csn1 ...	[more]
sp\|Q6NRT5\|CSN1_XENLA	2.9e-32	52.59	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1	[more]
sp\|Q99LD4\|CSN1_MOUSE	6.5e-32	52.59	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1	[more]
sp\|Q13098\|CSN1_HUMAN	8.5e-32	51.85	COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4	[more]

BLAST of Carg24957 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AV75\|A0A1S3AV75_CUCME	7.6e-70	98.54	COP9 signalosome complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103483302 PE=4 ...	[more]
tr\|A0A0A0L4A8\|A0A0A0L4A8_CUCSA	7.6e-70	98.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G123210 PE=4 SV=1	[more]
tr\|A0A2P5AYU3\|A0A2P5AYU3_PARAD	5.3e-63	89.78	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit OS=Paras...	[more]
tr\|A0A2P5CNT9\|A0A2P5CNT9_9ROSA	6.9e-63	89.78	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit OS=Trema...	[more]
tr\|A0A059BZZ1\|A0A059BZZ1_EUCGR	2.2e-61	90.51	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E00211 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000338	protein deneddylation

Vocabulary: **Cellular Component**
Term	Definition
GO:0008180	COP9 signalosome

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR033008	CSN1
IPR000717	PCI_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000338	protein deneddylation
cellular_component	GO:0008180	COP9 signalosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24957-RA	Carg24957-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000717	Proteasome component (PCI) domain	SMART	SM00088	PINT_4	coord: 24..107 e-value: 6.1E-19 score: 78.9
IPR000717	Proteasome component (PCI) domain	PFAM	PF01399	PCI	coord: 11..90 e-value: 4.0E-15 score: 56.1
IPR000717	Proteasome component (PCI) domain	PROSITE	PS50250	PCI	coord: 1..95 score: 17.71
None	No IPR available	SMART	SM00753	PINT	coord: 24..107 e-value: 6.1E-19 score: 78.9
None	No IPR available	GENE3D	G3DSA:1.25.40.570		coord: 4..125 e-value: 1.5E-13 score: 52.5
None	No IPR available	PANTHER	PTHR14145	26S PROTESOME SUBUNIT 6	coord: 1..131
IPR033008	COP9 signalosome complex subunit 1	PANTHER	PTHR14145:SF2	COP9 SIGNALOSOME COMPLEX SUBUNIT 1	coord: 1..131
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 19..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24957	Cla021263	Watermelon (97103) v1	carwmB0647
Carg24957	Csa3G123210	Cucumber (Chinese Long) v2	carcuB0668
Carg24957	MELO3C006142	Melon (DHL92) v3.5.1	carmeB0647
Carg24957	ClCG05G001830	Watermelon (Charleston Gray)	carwcgB0630
Carg24957	CSPI03G09100	Wild cucumber (PI 183967)	carcpiB0677
Carg24957	Cucsa.258090	Cucumber (Gy14) v1	carcgyB0723
Carg24957	CmaCh06G011040	Cucurbita maxima (Rimu)	carcmaB0919
Carg24957	CmaCh14G020110	Cucurbita maxima (Rimu)	carcmaB0918
Carg24957	CmoCh14G020720	Cucurbita moschata (Rifu)	carcmoB0891
Carg24957	CmoCh06G011310	Cucurbita moschata (Rifu)	carcmoB0892
Carg24957	Lsi05G020080	Bottle gourd (USVL1VR-Ls)	carlsiB592
Carg24957	Cp4.1LG08g01600	Cucurbita pepo (Zucchini)	carcpeB0923
Carg24957	CsGy3G009150	Cucumber (Gy14) v2	carcgybB0644
Carg24957	MELO3C006142.2	Melon (DHL92) v3.6.1	carmedB0657
Carg24957	CsaV3_3G009220	Cucumber (Chinese Long) v3	carcucB0679
Carg24957	Cla97C05G082260	Watermelon (97103) v2	carwmbB0676
Carg24957	Bhi01G000289	Wax gourd	carwgoB0763

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24957	Carg14802	Silver-seed gourd	carcarB548

The following block(s) are covering this gene:

None